A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A3 | Accurate, Adaptable, and Accessible Error Metrics for Predictive Models |

abbyyR | Access to Abbyy Optical Character Recognition (OCR) API |

abc | Tools for Approximate Bayesian Computation (ABC) |

ABCanalysis | Computed ABC Analysis |

abc.data | Data Only: Tools for Approximate Bayesian Computation (ABC) |

abcdeFBA | ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package |

ABCoptim | Implementation of Artificial Bee Colony (ABC) Optimization |

ABCp2 | Approximate Bayesian Computational Model for Estimating P2 |

abcrf | Approximate Bayesian Computation via Random Forests |

abctools | Tools for ABC Analyses |

abd | The Analysis of Biological Data |

abf2 | Load Gap-Free Axon ABF2 Files |

ABHgenotypeR | Easy Visualization of ABH Genotypes |

abind | Combine Multidimensional Arrays |

abn | Modelling Multivariate Data with Additive Bayesian Networks |

abodOutlier | Angle-Based Outlier Detection |

AbsFilterGSEA | Improved False Positive Control of Gene-Permuting GSEA with Absolute Filtering |

abundant | Abundant regression and high-dimensional principal fitted components |

ACA | Abrupt Change-Point or Aberration Detection in Point Series |

acc | Functions for Processing and Analyzing Accelerometer Data |

accelerometry | Functions for Processing Minute-to-Minute Accelerometer Data |

accelmissing | Missing Value Imputation for Accelerometer Data |

AcceptanceSampling | Creation and Evaluation of Acceptance Sampling Plans |

ACCLMA | ACC & LMA Graph Plotting |

accrual | Bayesian Accrual Prediction |

accrued | Data Quality Visualization Tools for Partially Accruing Data |

ACD | Categorical data analysis with complete or missing responses |

ACDm | Tools for Autoregressive Conditional Duration Models |

acepack | ace() and avas() for selecting regression transformations |

ACEt | Estimating Age Modification Effect on Genetic and Environmental Variance Components in Twin Models |

acid | Analysing Conditional Income Distributions |

acm4r | Align-and-Count Method comparisons of RFLP data |

acmeR | Implements ACME Estimator of Bird and Bat Mortality by Wind Turbines |

ACNE | Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization |

acnr | Annotated Copy-Number Regions |

acopula | Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas |

acp | Autoregressive Conditional Poisson |

aCRM | Convenience functions for analytical Customer Relationship Management |

acs | Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census |

ACSNMineR | Gene Enrichment Analysis from ACSN Maps or GMT Files |

acss | Algorithmic Complexity for Short Strings |

acss.data | Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method) |

ACSWR | A Companion Package for the Book "A Course in Statistics with R" |

ACTCD | Asymptotic Classification Theory for Cognitive Diagnosis |

Actigraphy | Actigraphy Data Analysis |

activity | Animal Activity Statistics |

activpalProcessing | Process activPAL Events Files |

actuar | Actuarial Functions and Heavy Tailed Distributions |

ActuDistns | Functions for actuarial scientists |

ada | The R Package Ada for Stochastic Boosting |

adabag | Applies Multiclass AdaBoost.M1, SAMME and Bagging |

adagio | Discrete and Global Optimization Routines |

AdapEnetClass | A Class of Adaptive Elastic Net Methods for Censored Data |

adaptDA | Adaptive Mixture Discriminant Analysis |

AdaptFit | Adaptive Semiparametic Regression |

AdaptFitOS | Adaptive Semiparametric Regression with Simultaneous Confidence Bands |

AdaptGauss | Gaussian Mixture Models (GMM) |

AdaptiveSparsity | Adaptive Sparsity Models |

adaptivetau | Tau-leaping stochastic simulation |

adaptMCMC | Implementation of a generic adaptive Monte Carlo Markov Chain sampler |

adaptsmoFMRI | Adaptive Smoothing of FMRI Data |

adaptTest | Adaptive two-stage tests |

addhaz | Binomial and Multinomial Additive Hazards Models |

addhazard | Fit Additive Hazards Models for Survival Analysis |

addinslist | Discover and Install Useful RStudio Addins |

additivityTests | Additivity Tests in the Two Way Anova with Single Sub-class Numbers |

addreg | Additive Regression for Discrete Data |

ADDT | A Package for Analysis of Accelerated Destructive Degradation Test Data |

ade4 | Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences |

ade4TkGUI | 'ade4' Tcl/Tk Graphical User Interface |

adegenet | Exploratory Analysis of Genetic and Genomic Data |

adegraphics | An S4 Lattice-Based Package for the Representation of Multivariate Data |

adehabitat | Analysis of Habitat Selection by Animals |

adehabitatHR | Home Range Estimation |

adehabitatHS | Analysis of Habitat Selection by Animals |

adehabitatLT | Analysis of Animal Movements |

adehabitatMA | Tools to Deal with Raster Maps |

adephylo | adephylo: exploratory analyses for the phylogenetic comparative method |

AdequacyModel | Adequacy of Probabilistic Models and General Purpose Optimization |

adespatial | Multivariate Multiscale Spatial Analysis |

ADGofTest | Anderson-Darling GoF test |

adhoc | calculate ad hoc distance thresholds for DNA barcoding identification |

adimpro | Adaptive Smoothing of Digital Images |

adlift | An adaptive lifting scheme algorithm |

ADM3 | An Interpretation of the ADM method - automated detection algorithm |

AdMit | Adaptive Mixture of Student-t distributions |

ADMMnet | Regularized Model with Selecting the Number of Non-Zeros |

ADPclust | Fast Clustering Using Adaptive Density Peak Detection |

ads | Spatial point patterns analysis |

AdvBinomApps | Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information |

adwave | Wavelet Analysis of Genomic Data from Admixed Populations |

AEDForecasting | Change Point Analysis in ARIMA Forecasting |

aemo | Download and process AEMO price and demand data |

AER | Applied Econometrics with R |

AF | Model-Based Estimation of Confounder-Adjusted Attributable Fractions |

afex | Analysis of Factorial Experiments |

AFLPsim | Hybrid Simulation and Genome Scan for Dominant Markers |

AFM | Atomic Force Microscope Image Analysis |

aftgee | Accelerated Failure Time Model with Generalized Estimating Equations |

AGD | Analysis of Growth Data |

AggregateR | Aggregate Numeric, Date and Categorical Variables by an ID |

agop | Aggregation Operators and Preordered Sets |

agRee | Various Methods for Measuring Agreement |

Agreement | Statistical Tools for Measuring Agreement |

agricolae | Statistical Procedures for Agricultural Research |

agridat | Agricultural Datasets |

agrmt | Calculate Agreement or Consensus in Ordered Rating Scales |

AGSDest | Estimation in Adaptive Group Sequential Trials |

agsemisc | Miscellaneous plotting and utility functions |

ahaz | Regularization for semiparametric additive hazards regression |

ahp | Analytic Hierarchy Process |

AHR | Estimation and Testing of Average Hazard Ratios |

AICcmodavg | Model Selection and Multimodel Inference Based on (Q)AIC(c) |

AID | Estimation of Box-Cox Power Transformation Parameter |

aidar | Tools for reading AIDA (http://aida.freehep.org/) files into R |

AIM | AIM: adaptive index model |

aimPlot | Create Pie Like Plot for Completeness |

Ake | Associated Kernel Estimations |

akima | Interpolation of Irregularly and Regularly Spaced Data |

akmeans | Adaptive Kmeans algorithm based on threshold |

alabama | Constrained Nonlinear Optimization |

alakazam | Immunoglobulin Clonal Lineage and Diversity Analysis |

ald | The Asymmetric Laplace Distribution |

ALDqr | Quantile Regression Using Asymmetric Laplace Distribution |

aLFQ | Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data |

AlgDesign | Algorithmic Experimental Design |

AlgebraicHaploPackage | Haplotype Two Snips Out of a Paired Group of Patients |

algstat | Algebraic statistics in R |

AlignStat | Comparison of Alternative Multiple Sequence Alignments |

alineR | Alignment of Phonetic Sequences Using the 'ALINE' Algorithm |

ALKr | Generate Age-Length Keys for fish populations |

allan | Automated Large Linear Analysis Node |

allanvar | Allan Variance Analysis |

alleHap | Allele Imputation and Haplotype Reconstruction from Pedigree Databases |

allelematch | Identifying unique multilocus genotypes where genotyping error and missing data may be present |

AlleleRetain | Allele Retention, Inbreeding, and Demography |

allelic | A fast, unbiased and exact allelic exact test |

AllPossibleSpellings | Computes all of a word's possible spellings |

alm | R Client for the Lagotto Altmetrics Platform |

alphahull | Generalization of the Convex Hull of a Sample of Points in the Plane |

alphaOutlier | Obtain Alpha-Outlier Regions for Well-Known Probability Distributions |

alphashape3d | Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud |

alr3 | Data to accompany Applied Linear Regression 3rd edition |

alr4 | Data to accompany Applied Linear Regression 4rd edition |

ALS | Multivariate Curve Resolution Alternating Least Squares (MCR-ALS) |

ALSCPC | Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form |

altmeta | Alternative Meta-Analysis Methods |

ALTopt | Optimal Experimental Designs for Accelerated Life Testing |

amap | Another Multidimensional Analysis Package |

AMAP.Seq | Compare Gene Expressions from 2-Treatment RNA-Seq Experiments |

AMCP | A Multiple Comparison Perspective |

ameco | European Commission Annual Macro-Economic (AMECO) Database |

amei | Adaptive Management of Epidemiological Interventions |

Amelia | A Program for Missing Data |

amen | Additive and Multiplicative Effects Models for Networks and Relational Data |

AmericanCallOpt | This package includes pricing function for selected American call options with underlying assets that generate payouts |

AMGET | Post-processing tool for ADAPT 5 |

aml | Adaptive Mixed LASSO |

AMOEBA | A Multidirectional Optimum Ecotope-Based Algorithm |

AMORE | A MORE flexible neural network package |

AmostraBrasil | Generates Samples or Complete List of Brazilian IBGE (Instituto Brasileiro De Geografia e Estatistica) Census Households, Geocoding it by Google Maps |

AmpliconDuo | Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts |

anacor | Simple and Canonical Correspondence Analysis |

analogsea | Interface to 'Digital Ocean' |

analogue | Analogue and Weighted Averaging Methods for Palaeoecology |

analogueExtra | Additional Functions for Use with the Analogue Package |

analyz | Model Layer for Automatic Data Analysis via CSV File Interpretation |

AnalyzeFMRI | Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format |

AnalyzeTS | Analyze Time Series |

anapuce | Tools for microarray data analysis |

AncestryMapper | Assigning Ancestry Based on Population References |

anchors | Statistical analysis of surveys with anchoring vignettes |

AnDE | An extended Bayesian Learning Technique developed by Dr. Geoff Webb |

andrews | Andrews curves |

anesrake | ANES Raking Implementation |

anfis | Adaptive Neuro Fuzzy Inference System in R |

AnglerCreelSurveySimulation | Simulate a Bus Route Creel Survey of Anglers |

animalTrack | Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data |

animation | A Gallery of Animations in Statistics and Utilities to Create Animations |

anim.plots | Simple Animated Plots For R |

AnnotLists | AnnotLists: A tool to annotate multiple lists from a specific annotation file |

anoint | Analysis of Interactions |

ANOM | Analysis of Means |

anominate | alpha-NOMINATE Ideal Point Estimator |

anonymizer | Anonymize Data Containing Personally Identifiable Information |

AnthropMMD | A GUI for Mean Measures of Divergence |

Anthropometry | Statistical Methods for Anthropometric Data |

antitrust | Tools for Antitrust Practitioners |

AntWeb | programmatic interface to the AntWeb |

aod | Analysis of Overdispersed Data |

aods3 | Analysis of Overdispersed Data using S3 methods |

aoos | Another Object Orientation System |

aop | Adverse Outcome Pathway Analysis |

aoristic | aoristic analysis with spatial output (kml) |

ApacheLogProcessor | Process the Apache Web Server Log Combined Files |

apaStyle | Generate APA Tables for MS Word |

apaTables | Create American Psychological Association (APA) Style Tables |

apc | Age-Period-Cohort Analysis |

apcluster | Affinity Propagation Clustering |

ape | Analyses of Phylogenetics and Evolution |

apex | Phylogenetic Methods for Multiple Gene Data |

aplore3 | Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd ed.) |

aplpack | Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some slider functions |

apmsWAPP | Pre- and Postprocessing for AP-MS data analysis based on spectral counts |

appell | Compute Appell's F1 hypergeometric function |

apple | Approximate Path for Penalized Likelihood Estimators |

AppliedPredictiveModeling | Functions and Data Sets for 'Applied Predictive Modeling' |

appnn | Amyloid Propensity Prediction Neural Network |

approximator | Bayesian prediction of complex computer codes |

aprean3 | Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998) |

apricom | Tools for the a Priori Comparison of Regression Modelling Strategies |

aprof | Amdahl's Profiler, Directed Optimization Made Easy |

APSIM | General Utility Functions for the 'Agricultural Production Systems Simulator' |

APSIMBatch | Analysis the output of Apsim software |

apsimr | Edit, Run and Evaluate APSIM Simulations Easily Using R |

apsrtable | apsrtable model-output formatter for social science |

apt | Asymmetric Price Transmission |

apTreeshape | Analyses of Phylogenetic Treeshape |

aqfig | Functions to help display air quality model output and monitoring data |

aqp | Algorithms for Quantitative Pedology |

aqr | Interface methods to use with an ActiveQuant Master Server |

AquaEnv | AquaEnv - an integrated development toolbox for aquatic chemical model generation |

AR1seg | Segmentation of an autoregressive Gaussian process of order 1 |

ArArRedux | Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data |

ARCensReg | Fitting Univariate Censored Linear Regression Model with Autoregressive Errors |

archdata | Example Datasets from Archaeological Research |

archetypes | Archetypal Analysis |

archiDART | Plant Root System Architecture Analysis Using DART and RSML Files |

archivist | Tools for Storing, Restoring and Searching for R Objects |

archivist.github | Tools for Archiving, Managing and Sharing R Objects via GitHub |

ArDec | Time series autoregressive-based decomposition |

arf3DS4 | Activated Region Fitting, fMRI data analysis (3D) |

arfima | Fractional ARIMA (and Other Long Memory) Time Series Modeling |

ArfimaMLM | Arfima-MLM Estimation For Repeated Cross-Sectional Data |

argosfilter | Argos locations filter |

argparse | Command line optional and positional argument parser |

argparser | Command-Line Argument Parser |

ArgumentCheck | Improved Communication to Users with Respect to Problems in Function Arguments |

arm | Data Analysis Using Regression and Multilevel/Hierarchical Models |

arnie | "Arnie" box office records 1982-2014 |

aroma.affymetrix | Analysis of Large Affymetrix Microarray Data Sets |

aroma.apd | A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated] |

aroma.cn | Copy-Number Analysis of Large Microarray Data Sets |

aroma.core | Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework |

ARPobservation | Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes |

aRpsDCA | Arps Decline Curve Analysis in R |

arrApply | Apply a Function to a Margin of an Array |

ArrayBin | Binarization of numeric data arrays |

arrayhelpers | Convenience functions for arrays |

ars | Adaptive Rejection Sampling |

ART | Aligned Rank Transform for Nonparametric Factorial Analysis |

artfima | ARTFIMA Model Estimation |

ARTIVA | Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model |

ARTool | Aligned Rank Transform |

ARTP | Gene and Pathway p-values computed using the Adaptive Rank Truncated Product |

ARTP2 | Pathway and Gene-Level Association Test |

arules | Mining Association Rules and Frequent Itemsets |

arulesNBMiner | Mining NB-Frequent Itemsets and NB-Precise Rules |

arulesSequences | Mining Frequent Sequences |

arulesViz | Visualizing Association Rules and Frequent Itemsets |

aRxiv | Interface to the arXiv API |

asaur | Data Sets for "Applied Survival Analysis Using R"" |

asbio | A Collection of Statistical Tools for Biologists |

ascii | Export R objects to several markup languages |

asd | Simulations for Adaptive Seamless Designs |

asdreader | Reading ASD Binary Files in R |

ash | David Scott's ASH Routines |

asht | Applied Statistical Hypothesis Tests |

AsioHeaders | 'Asio' C++ Header Files |

ASMap | Linkage Map Construction using the MSTmap Algorithm |

asnipe | Animal Social Network Inference and Permutations for Ecologists |

aspace | A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns |

ASPBay | Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data |

aspect | A General Framework for Multivariate Analysis with Optimal Scaling |

aSPU | Adaptive Sum of Powered Score Test |

asremlPlus | Augments the Use of 'Asreml' in Fitting Mixed Models |

assertive | Readable Check Functions to Ensure Code Integrity |

assertive.base | A Lightweight Core of the 'assertive' Package |

assertive.code | Assertions to Check Properties of Code |

assertive.data | Assertions to Check Properties of Data |

assertive.data.uk | Assertions to Check Properties of Strings |

assertive.data.us | Assertions to Check Properties of Strings |

assertive.datetimes | Assertions to Check Properties of Dates and Times |

assertive.files | Assertions to Check Properties of Files |

assertive.matrices | Assertions to Check Properties of Matrices |

assertive.models | Assertions to Check Properties of Models |

assertive.numbers | Assertions to Check Properties of Numbers |

assertive.properties | Assertions to Check Properties of Variables |

assertive.reflection | Assertions for Checking the State of R |

assertive.sets | Assertions to Check Properties of Sets |

assertive.strings | Assertions to Check Properties of Strings |

assertive.types | Assertions to Check Types of Variables |

assertr | Assertive Programming for R Analysis Pipelines |

assertthat | Easy pre and post assertions |

AssetPricing | Optimal pricing of assets with fixed expiry date |

assist | A Suite of R Functions Implementing Spline Smoothing Techniques |

ASSISTant | Adaptive Subgroup Selection in Group Sequential Trials |

AssocTests | Genetic Association Studies |

assortnet | Calculate the Assortativity Coefficient of Weighted and Binary Networks |

AssotesteR | Statistical Tests for Genetic Association Studies |

aster | Aster Models |

aster2 | Aster Models |

astro | Astronomy Functions, Tools and Routines |

astrochron | A Computational Tool for Astrochronology |

astrodatR | Astronomical Data |

astroFns | Astronomy: time and position functions, misc. utilities |

astrolibR | Astronomy Users Library |

astsa | Applied Statistical Time Series Analysis |

asVPC | Average Shifted Visual Predictive Checks |

asymLD | Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data |

asymmetry | The Slide-Vector Model for Multidimensional Scaling of Asymmetric Data |

asympTest | Asymptotic statistic |

AsynchLong | Regression Analysis of Sparse Asynchronous Longitudinal Data |

asypow | Calculate Power Utilizing Asymptotic Likelihood Ratio Methods |

ATE | Inference for Average Treatment Effects using Covariate Balancing |

AtelieR | A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests |

atmcmc | Automatically Tuned Markov Chain Monte Carlo |

ATmet | Advanced Tools for Metrology |

AtmRay | Acoustic Traveltime Calculations for 1-D Atmospheric Models |

aTSA | Alternative Time Series Analysis |

atsd | Support Querying Axibase Time-Series Database |

attribrisk | Population Attributable Risk |

AUC | Threshold independent performance measures for probabilistic classifiers |

aucm | AUC Maximization |

AUCRF | Variable Selection with Random Forest and the Area Under the Curve |

audio | Audio Interface for R |

audiolyzR | audiolyzR: Give your data a listen |

audit | Bounds for Accounting Populations |

auRoc | Various Methods to Estimate the AUC |

AUtests | Approximate Unconditional and Permutation Tests |

autoencoder | Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data |

automap | Automatic interpolation package |

AutoModel | Automated Hierarchical Multiple Regression with Assumptions Checking |

autopls | Partial Least Squares Regression with Backward Selection of Predictors |

AutoregressionMDE | Minimum Distance Estimation in Autoregressive Model |

AutoSEARCH | General-to-Specific (GETS) Modelling |

autoSEM | Performs Specification Search in Structural Equation Models |

autovarCore | Automated Vector Autoregression Models and Networks |

averisk | Calculation of Average Population Attributable Fractions and Confidence Intervals |

aws | Adaptive Weights Smoothing |

awsMethods | Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri' and 'dti' |

aws.signature | Amazon Web Services Request Signatures |

aylmer | A generalization of Fisher's exact test |

AzureML | Interface with Azure Machine Learning Datasets, Experiments and Web Services |

B2Z | Bayesian Two-Zone Model |

b6e6rl | Adaptive differential evolution, b6e6rl variant |

babar | Bayesian Bacterial Growth Curve Analysis in R |

babel | Ribosome profiling data analysis |

BaBooN | Bayesian Bootstrap Predictive Mean Matching - Multiple and Single Imputation for Discrete Data |

babynames | US Baby Names 1880-2014 |

BACA | Bubble Chart to Compare Biological Annotations by using DAVID |

BacArena | Modeling Framework for Cellular Communities in their Environments |

BACCO | Bayesian Analysis of Computer Code Output (BACCO) |

backblazer | Bindings to the Backblaze B2 API |

backpipe | Backward Pipe Operator |

backports | Reimplementations of Functions Introduced Since R-3.0.0 |

backShift | Learning Causal Cyclic Graphs from Unknown Shift Interventions |

backtest | Exploring Portfolio-Based Conjectures About Financial Instruments |

backtestGraphics | Interactive Graphics for Portfolio Data |

BACprior | Choice of the Hyperparameter Omega in the Bayesian Adjustment for Confounding (BAC) Algorithm |

bacr | Bayesian Adjustment for Confounding |

BAEssd | Bayesian Average Error approach to Sample Size Determination |

Bagidis | BAses GIving DIStances |

bagRboostR | Ensemble bagging and boosting classifiers |

BalancedSampling | Balanced and Spatially Balanced Sampling |

BaM | Functions and Datasets for Books by Jeff Gill |

bamdit | Bayesian Meta-Analysis of Diagnostic Test Data |

BAMMtools | Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees |

bandit | Functions for simple A/B split test and multi-armed bandit analysis |

BANFF | Bayesian Network Feature Finder |

BANOVA | Hierarchical Bayesian ANOVA Models |

bapred | Batch Effect Removal (in Phenotype Prediction using Gene Data) |

barcode | Barcode distribution plots |

Barnard | Barnard's Unconditional Test |

bartMachine | Bayesian Additive Regression Trees |

bartMachineJARs | bartMachine JARs |

BAS | Bayesian Model Averaging using Bayesian Adaptive Sampling |

base64 | Base64 Encoder and Decoder |

base64enc | Tools for base64 encoding |

basefun | Infrastructure for Computing with Basis Functions |

baseline | Baseline Correction of Spectra |

basicspace | Recovering a Basic Space from Issue Scales |

BASIX | BASIX: An efficient C/C++ toolset for R |

BaSTA | Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data |

bastah | Big Data Statistical Analysis for High-Dimensional Models |

BAT | Biodiversity Assessment Tools |

batade | HTML reports and so on |

batch | Batching Routines in Parallel and Passing Command-Line Arguments to R |

BatchExperiments | Statistical Experiments on Batch Computing Clusters |

BatchJobs | Batch Computing with R |

batchmeans | Consistent Batch Means Estimation of Monte Carlo Standard Errors |

batman | Convert Categorical Representations of Logicals to Actual Logicals |

batteryreduction | An R Package for Data Reduction by Battery Reduction |

BayClone2 | Bayesian Feature Allocation Model for Tumor Heterogeneity |

BayesBD | Bayesian Boundary Detection in Images |

BayesBinMix | Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions |

bayesbio | Miscellaneous Functions for Bioinformatics and Bayesian Statistics |

bayesboot | An Implementation of Rubin's (1981) Bayesian Bootstrap |

BayesBridge | Bridge Regression |

BayesComm | Bayesian Community Ecology Analysis |

bayescount | Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC |

BayesCR | Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions |

BayesDA | Functions and Datasets for the book "Bayesian Data Analysis" |

bayesDccGarch | The Bayesian Dynamic Conditional Correlation GARCH Model |

bayesDem | Graphical User Interface for bayesTFR, bayesLife and bayesPop |

BayesFactor | Computation of Bayes Factors for Common Designs |

bayesGARCH | Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations |

bayesGDS | Scalable Rejection Sampling for Bayesian Hierarchical Models |

BayesGESM | Bayesian Analysis of Generalized Elliptical Semi-Parametric Models and Flexible Measurement Error Models |

BayesH | Bayesian Regression Model with Mixture of Two Scaled Inverse Chi Square as Hyperprior |

BayesianAnimalTracker | Bayesian Melding of GPS and DR Path for Animal Tracking |

Bayesianbetareg | Bayesian Beta regression: joint mean and precision modeling |

BayesLCA | Bayesian Latent Class Analysis |

bayesLife | Bayesian Projection of Life Expectancy |

BayesLogit | Logistic Regression |

bayesm | Bayesian Inference for Marketing/Micro-Econometrics |

BayesMAMS | Designing Bayesian Multi-Arm Multi-Stage Studies |

bayesMCClust | Mixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering |

BayesMed | Default Bayesian Hypothesis Tests for Correlation, Partial Correlation, and Mediation |

bayesmeta | Bayesian Random-Effects Meta-Analysis |

bayesmix | Bayesian Mixture Models with JAGS |

BayesMixSurv | Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification |

BayesNI | BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints |

bayesPop | Probabilistic Population Projection |

bayespref | Hierarchical Bayesian analysis of ecological count data |

bayesQR | Bayesian quantile regression |

bayess | Bayesian Essentials with R |

BayesSAE | Bayesian Analysis of Small Area Estimation |

BayesSingleSub | Computation of Bayes factors for interrupted time-series designs |

BayesSummaryStatLM | MCMC Sampling of Bayesian Linear Models via Summary Statistics |

bayesSurv | Bayesian Survival Regression with Flexible Error and Random Effects Distributions |

bayesTFR | Bayesian Fertility Projection |

Bayesthresh | Bayesian thresholds mixed-effects models for categorical data |

BayesTree | Bayesian Additive Regression Trees |

BayesTreePrior | Bayesian Tree Prior Simulation |

BayesValidate | BayesValidate Package |

BayesVarSel | Bayes Factors, Model Choice and Variable Selection in Linear Models |

BayesX | R Utilities Accompanying the Software Package BayesX |

BayesXsrc | R Package Distribution of the BayesX C++ Sources |

BayHap | Bayesian analysis of haplotype association using Markov Chain Monte Carlo |

BayHaz | R Functions for Bayesian Hazard Rate Estimation |

BaylorEdPsych | R Package for Baylor University Educational Psychology Quantitative Courses |

bayou | Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies |

BaySIC | Bayesian Analysis of Significantly Mutated Genes in Cancer |

BAYSTAR | On Bayesian analysis of Threshold autoregressive model (BAYSTAR) |

BB | Solving and Optimizing Large-Scale Nonlinear Systems |

bbefkr | Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density |

bbemkr | Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error |

BBEST | Bayesian Estimation of Incoherent Neutron Scattering Backgrounds |

BBmisc | Miscellaneous Helper Functions for B. Bischl |

bbmle | Tools for General Maximum Likelihood Estimation |

BBMM | Brownian bridge movement model |

bbo | Biogeography-Based Optimization |

BBRecapture | Bayesian Behavioural Capture-Recapture Models |

bc3net | Gene Regulatory Network Inference with Bc3net |

BCA | Business and Customer Analytics |

BCBCSF | Bias-Corrected Bayesian Classification with Selected Features |

BCDating | Business Cycle Dating and Plotting Tools |

BcDiag | Diagnostics Plots for Bicluster Data |

BCE | Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data |

BCEA | Bayesian Cost Effectiveness Analysis |

BCEE | The Bayesian Causal Effect Estimation Algorithm |

BCEs0 | Bayesian Models for Cost-Effectiveness Analysis in the Presence of Structural Zero Costs |

Bchron | Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling |

Bclim | Bayesian Palaeoclimate Reconstruction from Pollen |

bclust | Bayesian Hierarchical Clustering Using Spike and Slab Models |

bcp | Bayesian Analysis of Change Point Problems |

bcpa | Behavioral change point analysis of animal movement |

bcpmeta | Bayesian Multiple Changepoint Detection Using Metadata |

BCRA | Breast Cancer Risk Assessment |

bcRep | Advanced Analysis of B Cell Receptor Repertoire Data |

bcrm | Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials |

bcrypt | 'Blowfish' Password Hashing Algorithm |

bcv | Cross-Validation for the SVD (Bi-Cross-Validation) |

bda | Density Estimation for Grouped Data |

bde | Bounded Density Estimation |

BDgraph | Bayesian Graph Selection Based on Birth-Death MCMC Approach |

bdots | Bootstrapped Differences of Time Series |

bdpopt | Optimisation of Bayesian Decision Problems |

bdpv | Inference and design for predictive values in binary diagnostic tests |

bdrift | Beta Drift Analysis |

bdscale | Remove Weekends and Holidays from ggplot2 Axes |

bdsmatrix | Routines for Block Diagonal Symmetric matrices |

bdvis | Biodiversity Data Visualizations |

BDWreg | Bayesian Inference for Discrete Weibull Regression |

bdynsys | Bayesian Dynamical System Model |

beadarrayFilter | Bead filtering for Illumina bead arrays |

beadarrayMSV | Analysis of Illumina BeadArray SNP data including MSV markers |

beanplot | Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot) |

BEANSP | Bayesian Estimate of Age-specific Nest Survival Probabilities |

beanz | Bayesian Analysis of Heterogeneous Treatment Effect |

BEDASSLE | Quantifies effects of geo/eco distance on genetic differentiation |

BEDMatrix | Matrices Backed by Binary PED Files (PLINK) |

bedr | Genomic Region Processing using Tools Such as Bedtools, Bedops and Tabix |

beepr | Easily Play Notification Sounds on any Platform |

beeswarm | The Bee Swarm Plot, an Alternative to Stripchart |

benchden | 28 benchmark densities from Berlinet/Devroye (1994) |

benchmark | Benchmark Experiments Toolbox |

Benchmarking | Benchmark and Frontier Analysis Using DEA and SFA |

benchmarkme | Crowd Sourced System Benchmarks |

benchmarkmeData | Data Set for the 'benchmarkme' Package |

benford.analysis | Benford Analysis for Data Validation and Forensic Analytics |

BenfordTests | Statistical Tests for Evaluating Conformity to Benford's Law |

bentcableAR | Bent-Cable Regression for Independent Data or Autoregressive Time Series |

BEQI2 | Benthic Ecosystem Quality Index 2 |

ber | Batch Effects Removal |

Bergm | Bayesian analysis for exponential random graph models |

BerlinData | Easy access to Berlin related data |

berryFunctions | Function Collection Related to Plotting and Hydrology |

Bessel | Bessel – Bessel Functions Computations and Approximations |

BEST | Bayesian Estimation Supersedes the t-Test |

bestglm | Best Subset GLM |

betafam | Detecting rare variants for quantitative traits using nuclear families |

betalink | Beta-Diversity of Species Interactions |

betapart | Partitioning beta diversity into turnover and nestedness components |

betaper | Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data |

betareg | Beta Regression |

betas | Standardized Beta Coefficients |

betategarch | Simulation, estimation and forecasting of Beta-Skew-t-EGARCH models |

bethel | Bethel's algorithm |

BeviMed | Bayesian Evaluation of Variant Involvement in Mendelian Disorders |

bezier | Bezier Curve and Spline Toolkit |

bfa | Bayesian Factor Analysis |

bfast | Breaks For Additive Season and Trend (BFAST) |

bfork | Basic Unix Process Control |

bfp | Bayesian Fractional Polynomials |

bgeva | Binary Generalized Extreme Value Additive Models |

bglm | Bayesian Estimation in Generalized Linear Models |

BGLR | Bayesian Generalized Linear Regression |

bgmm | Gaussian Mixture Modeling Algorithms And The Belief-based Mixture Modeling |

BGPhazard | Markov Beta and Gamma Processes for Modeling Hazard Rates |

BGSIMD | Block Gibbs Sampler with Incomplete Multinomial Distribution |

BH | Boost C++ Header Files |

Bhat | General likelihood exploration |

BHH2 | Useful Functions for Box, Hunter and Hunter II |

biasbetareg | Bias correction of the parameter estimates of the beta regression model |

BiasedUrn | Biased Urn Model Distributions |

bibliometrix | Bibliometric and Co-Citation Analysis Tool |

bibtex | bibtex parser |

biclust | BiCluster Algorithms |

BiDimRegression | Calculates the bidimensional regression between two 2D configurations |

bifactorial | Inferences for bi- and trifactorial trial designs |

BIFIEsurvey | Tools for Survey Statistics in Educational Assessment |

bigalgebra | BLAS routines for native R matrices and big.matrix objects |

biganalytics | Utilities for 'big.matrix' Objects from Package 'bigmemory' |

bigdata | Big Data Analytics |

BIGDAWG | Case-Control Analysis of Multi-Allelic Loci |

bigGP | Distributed Gaussian Process Calculations |

biglars | Scalable Least-Angle Regression and Lasso |

biglasso | Big Lasso: Extending Lasso Model Fitting to Big Data in R |

biglm | bounded memory linear and generalized linear models |

bigmemory | Manage Massive Matrices with Shared Memory and Memory-Mapped Files |

bigmemory.sri | A shared resource interface for Bigmemory Project packages |

bigml | Bindings for the BigML API |

bigpca | PCA, Transpose and Multicore Functionality for 'big.matrix' Objects |

BigQuic | Big Quadratic Inverse Covariance Estimation |

bigrquery | An Interface to Google's 'BigQuery' 'API' |

bigRR | Generalized Ridge Regression (with special advantage for p >> n cases) |

bigsplines | Smoothing Splines for Large Samples |

bigtabulate | Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects |

BigTSP | Top Scoring Pair based methods for classification |

BigVAR | Dimension Reduction Methods for Multivariate Time Series |

bild | BInary Longitudinal Data |

bimetallic | Power for SNP analyses using silver standard cases |

bimixt | Estimates Mixture Models for Case-Control Data |

Binarize | Binarization of One-Dimensional Data |

BinaryEMVS | Variable Selection for Binary Data Using the EM Algorithm |

BinaryEPPM | Mean and Variance Modeling of Binary Data |

binaryLogic | Binary Logic |

binda | Multi-Class Discriminant Analysis using Binary Predictors |

bindata | Generation of Artificial Binary Data |

binequality | Methods for Analyzing Binned Income Data |

bingat | Binary Graph Analysis Tools |

binGroup | Evaluation and experimental design for binomial group testing |

binhf | Haar-Fisz functions for binomial data |

binMto | Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions |

BinNonNor | Data Generation with Binary and Continuous Non-Normal Components |

BinNor | Simultaneous generation of multivariate binary and normal variates |

binom | Binomial Confidence Intervals For Several Parameterizations |

binomen | 'Taxonomic' Specification and Parsing Methods |

binomialcftp | Generates binomial random numbers via the coupling from the past algorithm |

binomlogit | Efficient MCMC for Binomial Logit Models |

binomSamSize | Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling |

binomTools | Performing diagnostics on binomial regression models |

BinOrdNonNor | Concurrent Generation of Binary, Ordinal and Continuous Data |

binr | Cut Numeric Values into Evenly Distributed Groups |

binseqtest | Exact Binary Sequential Designs and Analysis |

binst | Data Preprocessing, Binning for Classification and Regression |

bio3d | Biological Structure Analysis |

Biocomb | Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis |

Biodem | Biodemography Functions |

BiodiversityR | Package for Community Ecology and Suitability Analysis |

BIOdry | Multilevel Modeling of Dendroclimatical Fluctuations |

BioFTF | Biodiversity Assessment Using Functional Tools |

biogas | Process Biogas Data and Predict Biogas Production |

biogeo | Point Data Quality Assessment and Coordinate Conversion |

BioGeoBEARS | BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts |

biogram | N-Gram Analysis of Biological Sequences |

Biograph | Explore Life Histories |

bioinactivation | Simulation of Dynamic Microbial Inactivation |

bio.infer | Predict environmental conditions from biological observations |

biom | An interface package (beta) for the BIOM file format |

BioMark | Find Biomarkers in Two-Class Discrimination Problems |

biomartr | Functional Annotation and Biological Data Retrieval with R |

biomod2 | Ensemble Platform for Species Distribution Modeling |

BIOM.utils | Utilities for the BIOM (Biological Observation Matrix) Format |

bionetdata | Biological and chemical data networks |

BioPhysConnectoR | BioPhysConnectoR |

bioPN | Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets |

biorxivr | Search and Download Papers from the bioRxiv Preprint Server |

bios2mds | From BIOlogical Sequences to MultiDimensional Scaling |

biosignalEMG | Tools for Electromyogram Signals (EMG) Analysis |

BioStatR | Initiation Ã la Statistique avec R |

biotic | Calculation of Freshwater Biotic Indices |

biotools | Tools for Biometry and Applied Statistics in Agricultural Science |

bipartite | Visualising Bipartite Networks and Calculating Some (Ecological) Indices |

biplotbootGUI | Bootstrap on Classical Biplots and Clustering Disjoint Biplot |

BiplotGUI | Interactive Biplots in R |

BIPOD | BIPOD (Bayesian Inference for Partially Observed diffusions) |

birdring | Methods to Analyse Ring Re-Encounter Data |

birk | MA Birk's Functions |

bisectr | Tools to find bad commits with git bisect |

BiSEp | Toolkit to Identify Candidate Synthetic Lethality |

bisoreg | Bayesian Isotonic Regression with Bernstein Polynomials |

bit | A class for vectors of 1-bit booleans |

bit64 | A S3 Class for Vectors of 64bit Integers |

bitops | Bitwise Operations |

BiTrinA | Binarization and Trinarization of One-Dimensional Data |

bitrugs | Bayesian Inference of Transmission Routes Using Genome Sequences |

BivarP | Estimating the Parameters of Some Bivariate Distributions |

bivarRIpower | Sample size calculations for bivariate longitudinal data |

biwavelet | Conduct Univariate and Bivariate Wavelet Analyses |

biwt | Functions to compute the biweight mean vector and covariance & correlation matrices |

bizdays | Business Days Calculations and Utilities |

BKPC | Bayesian Kernel Projection Classifier |

blackbox | Black Box Optimization and Exploration of Parameter Space |

BlakerCI | Blaker's Binomial Confidence Limits |

BlandAltmanLeh | Plots (Slightly Extended) Bland-Altman Plots |

blatr | Send Emails Using 'Blat' for Windows |

Blaunet | Calculate and Analyze Blau Status for Measuring Social Distance |

blavaan | Bayesian Latent Variable Analysis |

BLCOP | Black-Litterman and Copula Opinion Pooling Frameworks |

blender | Analyze biotic homogenization of landscapes |

blighty | United Kingdom coastlines |

blkergm | Fitting block ERGM given the block structure on social networks |

blm | Binomial linear and linear-expit regression |

blme | Bayesian Linear Mixed-Effects Models |

blmeco | Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan" |

blockcluster | Coclustering Package for Binary, Categorical, Contingency and Continuous Data-Sets |

blockmatrix | blockmatrix: Tools to solve algebraic systems with partitioned matrices |

BlockMessage | Creates strings that show a text message in 8 by 8 block letters |

blockmodeling | An R package for Generalized and classical blockmodeling of valued networks |

blockmodels | Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm |

blockrand | Randomization for block random clinical trials |

blocksdesign | Nested Block Designs for Unstructured Treatments |

blockseg | Two Dimensional Change-Points Detection |

blockTools | Block, Assign, and Diagnose Potential Interference in Randomized Experiments |

Blossom | Statistical Comparisons with Distance-Function Based Permutation Tests |

BLR | Bayesian Linear Regression |

blsAPI | Request Data from the U.S. Bureau of Labor Statistics API |

BMA | Bayesian Model Averaging |

bmd | Benchmark dose analysis for dose-response data |

bmem | Mediation analysis with missing data using bootstrap |

bmeta | Bayesian Meta-Analysis and Meta-Regression |

BMhyd | PCM for Hybridization |

Bmix | Bayesian Sampling for Stick-Breaking Mixtures |

bmk | MCMC diagnostics package |

bmmix | Bayesian multinomial mixture |

BMN | The pseudo-likelihood method for pairwise binary markov networks |

bmp | Read Windows Bitmap (BMP) images |

bmrm | Bundle Methods for Regularized Risk Minimization Package |

BMRV | Bayesian Models for Rare Variant Association Analysis |

BMS | Bayesian Model Averaging Library |

BNDataGenerator | Data Generator based on Bayesian Network Model |

bnlearn | Bayesian Network Structure Learning, Parameter Learning and Inference |

bnnSurvival | Bagged k-Nearest Neighbors Survival Prediction |

bnormnlr | Bayesian Estimation for Normal Heteroscedastic Nonlinear Regression Models |

BNPdensity | Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures |

bnpmr | Bayesian monotonic nonparametric regression |

BNPTSclust | A Bayesian Nonparametric Algorithm for Time Series Clustering |

BNSP | Bayesian Non- and Semi-Parametric Model Fitting |

bnstruct | Bayesian Network Structure Learning from Data with Missing Values |

boa | Bayesian Output Analysis Program (BOA) for MCMC |

bodenmiller | Profilling of Peripheral Blood Mononuclear Cells using CyTOF |

BOG | Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions |

boilerpipeR | Interface to the Boilerpipe Java Library |

BOIN | Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials |

bold | Interface to Bold Systems 'API' |

Bolstad | Functions for Elementary Bayesian Inference |

Bolstad2 | Bolstad functions |

BonEV | An Improved Multiple Testing Procedure for Controlling False Discovery Rates |

boolean3 | Boolean Binary Response Models |

BoolNet | Construction, Simulation and Analysis of Boolean Networks |

Boom | Bayesian Object Oriented Modeling |

BoomSpikeSlab | MCMC for Spike and Slab Regression |

boostmtree | Boosted Multivariate Trees for Longitudinal Data |

boostr | A modular framework to bag or boost any estimation procedure |

boostSeq | Optimized GWAS cohort subset selection for resequencing studies |

boot | Bootstrap Functions (Originally by Angelo Canty for S) |

bootES | Bootstrap Effect Sizes |

bootLR | Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests |

bootnet | Bootstrap Methods for Various Network Estimation Routines |

BootPR | Bootstrap Prediction Intervals and Bias-Corrected Forecasting |

bootRes | Bootstrapped Response and Correlation Functions |

bootruin | A bootstrap test for the probability of ruin in the classical risk process |

bootspecdens | Testing equality of spectral densities |

bootsPLS | Bootstrap Subsamplings of Sparse Partial Least Squares - Discriminant Analysis for Classification and Signature Identification |

bootStepAIC | Bootstrap stepAIC |

bootstrap | Functions for the Book "An Introduction to the Bootstrap" |

bootSVD | Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data |

bootTimeInference | Robust Performance Hypothesis Testing with the Sharpe Ratio |

boottol | Bootstrap Tolerance Levels for Credit Scoring Validation Statistics |

boral | Bayesian Ordination and Regression AnaLysis |

Boruta | Wrapper Algorithm for All-Relevant Feature Selection |

BoSSA | a Bunch of Structure and Sequence Analysis |

boussinesq | Analytic Solutions for (ground-water) Boussinesq Equation |

boxplotdbl | Double Box Plot for Two-Axes Correlation |

boxr | Interface for the 'Box.com API' |

bpa | Basic Pattern Analysis |

bpca | Biplot of Multivariate Data Based on Principal Components Analysis |

bpcp | Beta Product Confidence Procedure for Right Censored Data |

bPeaks | bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes |

BPEC | Bayesian Phylogeographic and Ecological Clustering |

bpkde | Back-Projected Kernel Density Estimation |

bqtl | Bayesian QTL Mapping Toolkit |

BradleyTerry2 | Bradley-Terry Models |

braidReports | Visualize Combined Action Response Surfaces and Report BRAID Analyses |

braidrm | Fitting Dose Response with the BRAID Combined Action Model |

BrailleR | Improved Access for Blind Users |

brainGraph | Graph Theory Analysis of Brain MRI Data |

brainR | Helper functions to misc3d and rgl packages for brain imaging |

brainwaver | Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory |

Branching | Simulation and Estimation for Branching Processes |

braQCA | Bootstrapped Robustness Assessment for Qualitative Comparative Analysis |

breakage | SICM pipette tip geometry estimation |

breakaway | Species Richness Estimation and Modeling |

breakpoint | An R Package for Multiple Break-Point Detection via the Cross-Entropy Method |

bReeze | Functions for wind resource assessment |

brew | Templating Framework for Report Generation |

brewdata | Extracting Usable Data from the Grad Cafe Results Search |

brglm | Bias reduction in binomial-response generalized linear models |

bride | Brier score decomposition of probabilistic forecasts for binary events |

bridgedist | An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003) |

brms | Bayesian Regression Models using Stan |

brnn | Bayesian Regularization for Feed-Forward Neural Networks |

Brobdingnag | Very large numbers in R |

broman | Karl Broman's R Code |

broom | Convert Statistical Analysis Objects into Tidy Data Frames |

brotli | A Compression Format Optimized for the Web |

brr | Bayesian Inference on the Ratio of Two Poisson Rates |

brranching | Fetch 'Phylogenies' from Many Sources |

BRugs | Interface to the 'OpenBUGS' MCMC Software |

BSagri | Statistical methods for safety assessment in agricultural field trials |

BSDA | Basic Statistics and Data Analysis |

BSGS | Bayesian Sparse Group Selection |

BSGW | Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression |

bshazard | Nonparametric Smoothing of the Hazard Function |

BsMD | Bayes Screening and Model Discrimination |

bspec | Bayesian Spectral Inference |

bspmma | bspmma: Bayesian Semiparametric Models for Meta-Analysis |

BSquare | Bayesian Simultaneous Quantile Regression |

BSSasymp | Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates |

bssn | Birnbaum-Saunders Model Based on Skew-Normal Distribution |

bst | Gradient Boosting |

bsts | Bayesian Structural Time Series |

btergm | Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood |

btf | Estimates univariate function via Bayesian trend filtering |

BTLLasso | Modelling Heterogeneity in Paired Comparison Data |

BTSPAS | Bayesian Time-Strat. Population Analysis |

BTYD | Implementing Buy 'Til You Die Models |

bujar | Buckley-James Regression for Survival Data with High-Dimensional Covariates |

BurStFin | Burns Statistics Financial |

BurStMisc | Burns Statistics miscellaneous |

bursts | Markov model for bursty behavior in streams |

bvarsv | Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters |

bvenn | A Simple alternative to proportional Venn diagrams |

bvls | The Stark-Parker algorithm for bounded-variable least squares |

bvpSolve | Solvers for Boundary Value Problems of Differential Equations |

BVS | Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies |

bWGR | Bagging Whole-Genome Regression |

BWStest | Baumgartner Weiss Schindler Test of Equal Distributions |

c060 | Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models |

c3net | Infering large-scale gene networks with C3NET |

C50 | C5.0 Decision Trees and Rule-Based Models |

ca | Simple, Multiple and Joint Correspondence Analysis |

cabootcrs | Bootstrap Confidence Regions for Correspondence Analysis |

cacIRT | Classification Accuracy and Consistency under Item Response Theory |

CaDENCE | Conditional Density Estimation Network Construction and Evaluation |

CADFtest | This package performs the CADF unit root test proposed in Hansen (1995) |

cAIC4 | Conditional Akaike information criterion for lme4 |

Cairo | R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output |

cairoDevice | Embeddable Cairo Graphics Device Driver |

calACS | Calculations for All Common Subsequences |

Calculator.LR.FNs | Calculator for LR Fuzzy Numbers |

CALF | Coarse Approximation Linear Function |

CALIBERrfimpute | Multiple imputation using MICE and Random Forest |

calibrar | Automated Parameter Estimation for Complex (Ecological) Models |

calibrate | Calibration of Scatterplot and Biplot Axes |

CalibrateSSB | Weighting and Estimation for Panel Data with Non-Response |

calibrator | Bayesian calibration of complex computer codes |

calmate | Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation |

CAM | Causal Additive Model (CAM) |

CAMAN | Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN |

camel | Calibrated Machine Learning |

camtrapR | Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses |

cancerGI | Analyses of Cancer Gene Interaction |

cancerTiming | Estimation of Temporal Ordering of Cancer Abnormalities |

candisc | Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis |

Canopy | Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing |

CANSIM2R | Directly Extracts Complete CANSIM Data Tables |

cape | Combined Analysis of Pleiotropy and Epistasis |

caper | Comparative Analyses of Phylogenetics and Evolution in R |

capm | Companion Animal Population Management |

captioner | Numbers Figures and Creates Simple Captions |

captr | Client for the Captricity API |

capushe | CAlibrating Penalities Using Slope HEuristics |

capwire | Estimates population size from non-invasive sampling |

car | Companion to Applied Regression |

CARBayes | Spatial Generalised Linear Mixed Models for Areal Unit Data |

CARBayesdata | Data Sets Used in the Vignette Accompanying the CARBayes Package |

CARBayesST | Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data |

carcass | Estimation of the Number of Fatalities from Carcass Searches |

cardidates | Identification of Cardinal Dates in Ecological Time Series |

cardioModel | Cardiovascular Safety Exposure-Response Modeling in Early-Phase Clinical Studies |

care | High-Dimensional Regression and CAR Score Variable Selection |

CARE1 | Statistical package for population size estimation in capture-recapture models |

caret | Classification and Regression Training |

caretEnsemble | Ensembles of Caret Models |

caribou | Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry |

CarletonStats | Functions For Statistics Classes At Carleton College |

CARLIT | Ecological Quality Ratios Calculation and Plot |

caroline | A Collection of Database, Data Structure, Visualization, and Utility Functions for R |

caRpools | CRISPR AnalyzeR for Pooled CRISPR Screens |

CARrampsOcl | Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation |

cartography | Thematic Cartography |

carx | Censored Autoregressive Model with Exogenous Covariates |

caschrono | SÃ©ries temporelles avec R - MÃ©thodes et cas |

caseMatch | Identify Similar Cases for Qualitative Case Studies |

cat | Analysis of categorical-variable datasets with missing values |

catdap | Categorical Data Analysis Program Package |

catdata | Categorical Data |

CatDyn | Fishery Stock Assessment by Generalized Depletion Models |

cate | High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation |

catenary | Fits a Catenary to Given Points |

CateSelection | Categorical Variable Selection Methods |

cati | Community Assembly by Traits: Individuals and Beyond |

catIrt | An R Package for Simulating IRT-Based Computerized Adaptive Tests |

catnet | Categorical Bayesian Network Inference |

caTools | Tools: moving window statistics, GIF, Base64, ROC AUC, etc |

catR | Procedures to Generate Patterns under Computerized Adaptive Testing |

catspec | Special models for categorical variables |

causaldrf | Tools for Estimating Causal Dose Response Functions |

causaleffect | Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models |

CausalFX | Methods for Estimating Causal Effects from Observational Data |

CausalGAM | Estimation of Causal Effects with Generalized Additive Models |

causalsens | Selection Bias Approach to Sensitivity Analysis for Causal Effects |

Causata | Analysis utilities for binary classification and Causata users |

CAvariants | Correspondence Analysis Variants |

cba | Clustering for Business Analytics |

CBPS | Covariate Balancing Propensity Score |

cbsodataR | Statistics Netherlands (CBS) Open Data API Client |

CCA | Canonical correlation analysis |

CCAGFA | Bayesian Canonical Correlation Analysis and Group Factor Analysis |

ccaPP | (Robust) Canonical Correlation Analysis via Projection Pursuit |

cccd | Class Cover Catch Digraphs |

ccChooser | Developing a core collections |

cccp | Cone Constrained Convex Problems |

cccrm | Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures |

ccda | Combined Cluster and Discriminant Analysis |

ccgarch | Conditional Correlation GARCH models |

cchs | Cox Model for Case-Cohort Data with Stratified Subcohort-Selection |

cclust | Convex Clustering Methods and Clustering Indexes |

CCM | Correlation classification method (CCM) |

CCMnet | Simulate Congruence Class Model for Networks |

CCP | Significance Tests for Canonical Correlation Analysis (CCA) |

CCpop | One and two locus GWAS of binary phenotype with case-control-population design |

CCTpack | Cultural Consensus Theory applications to data |

cda | Coupled dipole approximation of light scattering by clusters of nanoparticles |

cdb | Reading and Writing Constant DataBases |

cdcfluview | Retrieve U.S. Flu Season Data from the CDC FluView Portal |

cdcsis | Conditional Distance Correlation and Its Related Feature Screening Method |

cdfquantreg | Quantile Regression for Random Variables on the Unit Interval |

CDFt | Statistical downscaling through CDF-transform |

CDLasso | Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression |

CDM | Cognitive Diagnosis Modeling |

CDNmoney | Components of Canadian Monetary and Credit Aggregates |

cdom | R Functions to Model CDOM Spectra |

CDROM | Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data |

cds | Constrained Dual Scaling for Detecting Response Styles |

CDVine | Statistical Inference of C- And D-Vine Copulas |

CEC | Cross-Entropy Clustering |

cec2005benchmark | Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization |

cec2013 | Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013 |

CEGO | Combinatorial Efficient Global Optimization |

celestial | Collection of Common Astronomical Conversion Routines and Functions |

cellranger | Translate Spreadsheet Cell Ranges to Rows and Columns |

CellularAutomaton | One-Dimensional Cellular Automata |

cellVolumeDist | Functions to fit cell volume distributions and thereby estimate cell growth rates and division times |

cem | Coarsened Exact Matching |

cems | Conditional Expectation Manifolds |

CensMixReg | Censored Linear Mixture Regression Models |

censNID | censored NID samples |

censorcopula | Estimate Parameter of Bivariate Copula |

censReg | Censored Regression (Tobit) Models |

CensRegMod | Fits Normal and Student-t Censored Regression Model |

censusr | Collect Data from the Census API |

cents | Censored time series |

CEoptim | Cross-Entropy R Package for Optimization |

CePa | Centrality-based pathway enrichment |

CepLDA | Discriminant Analysis of Time Series in the Presence of Within-Group Spectral Variability |

cepp | Context Driven Exploratory Projection Pursuit |

CerioliOutlierDetection | Outlier detection using the iterated RMCD method of Cerioli (2010) |

cernn | Covariance Estimation Regularized by Nuclear Norm Penalties |

CFC | Cause-Specific Framework for Competing-Risk Analysis |

CfEstimateQuantiles | Estimate quantiles using any order Cornish-Fisher expansion |

cffdrs | Canadian Forest Fire Danger Rating System |

cg | Compare Groups, Analytically and Graphically |

cgam | Constrained Generalized Additive Model |

cgAUC | Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it |

cgdsr | R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS) |

cggd | Continuous Generalized Gradient Descent |

cgh | Microarray CGH analysis using the Smith-Waterman algorithm |

cghFLasso | Detecting hot spot on CGH array data with fused lasso regression |

cghseg | Segmentation Methods for Array CGH Analysis |

CGP | Composite Gaussian process models |

cgwtools | Miscellaneous Tools |

ChainLadder | Statistical Methods and Models for Claims Reserving in General Insurance |

changepoint | Methods for Changepoint Detection |

ChangepointTesting | Change Point Estimation for Clustered Signals |

ChannelAttribution | Markov Model for the Online Multi-Channel Attribution Problem |

ChannelAttributionApp | Shiny Web Application for the Multichannel Attribution Problem |

ChaosGame | Chaos Game |

ChargeTransport | Charge Transfer Rates and Charge Carrier Mobilities |

CHAT | Clonal Heterogeneity Analysis Tool |

CHCN | Canadian Historical Climate Network |

cheb | Discrete Linear Chebyshev Approximation |

chebpol | Multivariate Chebyshev Interpolation |

CheckDigit | Calculate and verify check digits |

checkmate | Fast and Versatile Argument Checks |

checkpoint | Install Packages from Snapshots on the Checkpoint Server for Reproducibility |

cheddar | Analysis and Visualisation of Ecological Communities |

chemCal | Calibration Functions for Analytical Chemistry |

chemometrics | Multivariate Statistical Analysis in Chemometrics |

ChemometricsWithR | Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences |

ChemometricsWithRData | Data for package ChemometricsWithR |

ChemoSpec | Exploratory Chemometrics for Spectroscopy |

cherry | Multiple Testing Methods for Exploratory Research |

childsds | Calculation of standard deviation scores adduced from different growth standards |

chillR | Statistical Methods for Phenology Analysis in Temperate Fruit Trees |

chipPCR | Toolkit of Helper Functions to Pre-Process Amplification Data |

chngpt | Change Point Regression |

CHNOSZ | Chemical Thermodynamics and Activity Diagrams |

choiceDes | Design Functions for Choice Studies |

ChoiceModelR | Choice Modeling in R |

choplump | Choplump tests |

chopthin | The Chopthin Resampler |

chords | Estimation in respondent driven samples |

choroplethr | Simplify the Creation of Choropleth Maps in R |

choroplethrAdmin1 | Contains an Administrative-Level-1 Map of the World |

choroplethrMaps | Contains maps used by the choroplethr package |

chromer | Interface to Chromosome Counts Database API |

chromoR | Analysis of chromosomal interactions data (correction, segmentation and comparison) |

chron | Chronological Objects which can Handle Dates and Times |

CHsharp | Choi and Hall Style Data Sharpening |

chunked | Chunkwise Text-File Processing for 'dplyr' |

CIDnetworks | Generative Models for Complex Networks with Conditionally Independent Dyadic Structure |

CIFsmry | Weighted summary of cumulative incidence functions |

cin | Causal Inference for Neuroscience |

CINID | Curculionidae INstar IDentification |

CINOEDV | Co-Information based N-Order Epistasis Detector and Visualizer |

CircE | Circumplex models Estimation |

circlize | Circular Visualization |

CircNNTSR | Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models |

CircOutlier | Detection of Outliers in Circular-Circular Regression |

CircStats | Circular Statistics, from "Topics in circular Statistics" (2001) |

circular | Circular Statistics |

cIRT | Choice Item Response Theory |

cit | Causal Inference Test |

CITAN | CITation ANalysis Toolpack |

citbcmst | CIT Breast Cancer Molecular SubTypes Prediction |

citccmst | CIT Colon Cancer Molecular SubTypes Prediction |

CityPlot | Visualization of structure and contents of a database |

cjoint | AMCE Estimator for Conjoint Experiments |

ckanr | Client for the Comprehensive Knowledge Archive Network ('CKAN') 'API' |

Ckmeans.1d.dp | Optimal k-Means Clustering for One-Dimensional Data |

cladoRcpp | C++ implementations of phylogenetic cladogenesis calculations |

ClamR | Time Series Modeling for Climate Change Proxies |

clarifai | Access to Clarifai API |

class | Functions for Classification |

classGraph | Construct Graphs of S4 Class Hierarchies |

classifly | Explore classification models in high dimensions |

classify | Classification Accuracy and Consistency under IRT models |

classInt | Choose Univariate Class Intervals |

classyfire | Robust multivariate classification using highly optimised SVM ensembles |

cleangeo | Cleaning Geometries from Spatial Objects |

clere | Simultaneous Variables Clustering and Regression |

clhs | Conditioned Latin Hypercube Sampling |

ClickClust | Model-Based Clustering of Categorical Sequences |

clickstream | Analyzes Clickstreams Based on Markov Chains |

clifro | Easily Download and Visualise Climate Data from CliFlo |

ClimClass | Climate Classification According to Several Indices |

climdex.pcic | PCIC Implementation of Climdex Routines |

clime | Constrained L1-minimization for Inverse (covariance) Matrix Estimation |

climtrends | Statistical Methods for Climate Sciences |

climwin | Climate Window Analysis |

clinfun | Clinical Trial Design and Data Analysis Functions |

clinsig | Clinical Significance Functions |

clinUtiDNA | Clinical Utility of DNA Testing |

clipr | Read and Write from the System Clipboard |

clisymbols | Unicode Symbols at the R Prompt |

CLME | Constrained Inference for Linear Mixed Effects Models |

clogitboost | Boosting Conditional Logit Model |

clogitL1 | Fitting exact conditional logistic regression with lasso and elastic net penalties |

cloudUtil | Cloud Util Plots |

clpAPI | R Interface to C API of COIN-OR Clp |

CLSOCP | A smoothing Newton method SOCP solver |

clttools | Central Limit Theorem Experiments (Theoretical and Simulation) |

clue | Cluster Ensembles |

ClueR | CLUster Evaluation (CLUE) |

clues | Clustering Method Based on Local Shrinking |

CluMix | Clustering and Visualization of Mixed-Type Data |

clusrank | Wilcoxon Rank Sum Test for Clustered Data |

cluster | "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al. |

clusterCrit | Clustering Indices |

cluster.datasets | Cluster Analysis Data Sets |

ClusteredMutations | Location and Visualization of Clustered Somatic Mutations |

clusterfly | Explore clustering interactively using R and GGobi |

clusterGeneration | Random Cluster Generation (with Specified Degree of Separation) |

clusterGenomics | Identifying clusters in genomics data by recursive partitioning |

clusterhap | Clustering Genotypes in Haplotypes |

clustering.sc.dp | Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint |

clusterPower | Power calculations for cluster-randomized and cluster-randomized crossover trials |

ClusterRankTest | Rank Tests for Clustered Data |

clusterRepro | Reproducibility of gene expression clusters |

clusterSEs | Calculate Cluster-Robust p-Values and Confidence Intervals |

clusterSim | Searching for Optimal Clustering Procedure for a Data Set |

ClusterStability | Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions |

clustertend | Check the Clustering Tendency |

clusteval | Evaluation of Clustering Algorithms |

ClustGeo | Clustering of Observations with Geographical Constraints |

clustMD | Model Based Clustering for Mixed Data |

clustMixType | k-Prototypes Clustering for Mixed Variable-Type Data |

ClustMMDD | Variable Selection in Clustering by Mixture Models for Discrete Data |

ClustOfVar | Clustering of variables |

clustrd | Methods for joint dimension reduction and clustering |

clustsig | Significant Cluster Analysis |

ClustVarLV | Clustering of Variables Around Latent Variables |

clustvarsel | Variable Selection for Model-Based Clustering |

clv | Cluster Validation Techniques |

clValid | Validation of Clustering Results |

cmaes | Covariance Matrix Adapting Evolutionary Strategy |

cmaesr | Covariance Matrix Adaptation Evolution Strategy |

CMC | Cronbach-Mesbah Curve |

CMF | Collective matrix factorization |

cmm | Categorical Marginal Models |

cmna | Computational Methods for Numerical Analysis |

CMPControl | Control Charts for Conway-Maxwell-Poisson Distribution |

CMplot | Circle Manhattan Plot |

cmprsk | Subdistribution Analysis of Competing Risks |

cmprskQR | Analysis of Competing Risks Using Quantile Regressions |

cmrutils | Misc Functions of the Center for the Mathematical Research |

cmsaf | Tools for CM SAF Netcdf Data |

cmvnorm | The Complex Multivariate Gaussian Distribution |

cna | A Package for Coincidence Analysis (CNA) |

cncaGUI | Canonical Non-Symmetrical Correspondence Analysis in R |

cnmlcd | Maximum Likelihood Estimation of a Log-Concave Density Function |

CNOGpro | Copy Numbers of Genes in prokaryotes |

CNprep | Pre-process DNA Copy Number (CN) Data for Detection of CN Events |

CNVassoc | Association Analysis of CNV Data and Imputed SNPs |

CNVassocData | Example data sets for association analysis of CNV data |

coala | A Framework for Coalescent Simulation |

coalescentMCMC | MCMC Algorithms for the Coalescent |

coarseDataTools | A Collection of Functions to Help with Analysis of Coarsely Observed Data |

COBRA | Nonlinear Aggregation of Predictors |

cobs | COnstrained B-Splines (Sparse Matrix Based) |

CoClust | Copula Based Cluster Analysis |

cocoreg | Extracts Shared Variation in Collections of Datasets Using Regression Models |

cocorresp | Co-Correspondence Analysis Methods |

cocron | Statistical Comparisons of Two or more Alpha Coefficients |

coda | Output Analysis and Diagnostics for MCMC |

codadiags | Markov chain Monte Carlo burn-in based on "bridge" statistics |

cOde | Automated C Code Generation for Use with the 'deSolve' and 'bvpSolve' Packages |

codep | Multiscale Codependence Analysis |

codetools | Code Analysis Tools for R |

codingMatrices | Alternative Factor Coding Matrices for Linear Model Formulae |

codyn | Community Dynamics Metrics |

coefficientalpha | Robust Coefficient Alpha and Omega with Missing and Non-Normal Data |

coefplot | Plots Coefficients from Fitted Models |

coenocliner | Coenocline Simulation |

coenoflex | Gradient-Based Coenospace Vegetation Simulator |

coexist | Species coexistence modeling and analysis |

cofeatureR | Generate Cofeature Matrices |

CoImp | Copula based imputation method |

coin | Conditional Inference Procedures in a Permutation Test Framework |

CoinMinD | Simultaneous Confidence Interval for Multinomial Proportion |

cold | Count Longitudinal Data |

CollapsABEL | Generalized CDH (GCDH) Analysis |

CollocInfer | Collocation Inference for Dynamic Systems |

collUtils | Auxiliary Package for Package 'CollapsABEL' |

coloc | Colocalisation tests of two genetic traits |

coloredICA | Implementation of Colored Independent Component Analysis and Spatial Colored Independent Component Analysis |

colorfulVennPlot | Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data |

colorhcplot | Colorful Hierarchical Clustering Dendrograms |

ColorPalette | Color Palettes Generator |

colorRamps | Builds color tables |

colorscience | Color Science Methods and Data |

colorspace | Color Space Manipulation |

colorSpec | Color Calculations with Emphasis on Spectral Data |

colortools | Tools for colors in a Hue-Saturation-Value (HSV) color model |

colourlovers | R Client for the COLOURlovers API |

comato | Analysis of Concept Maps |

COMBIA | Synergy/Antagonism Analyses of Drug Combinations |

combinat | combinatorics utilities |

Combine | Game-Theoretic Probability Combination |

CombinePValue | Combine a Vector of Correlated p-values |

CombinS | Construction Methods of some Series of PBIB Designs |

CombMSC | Combined Model Selection Criteria |

comclim | Community climate statistics |

cometExactTest | Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm |

comf | Calculation of Thermal Comfort Indices |

ComICS | Computational Methods for Immune Cell-Type Subsets |

commandr | Command pattern in R |

commentr | Print Nicely Formatted Comments for Use in Script Files |

CommonJavaJars | Useful libraries for building a Java based GUI under R |

commonmark | Bindings to the CommonMark Reference Implementation |

CommonTrend | Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics |

CommT | Comparative Phylogeographic Analysis using the Community Tree Framework |

COMMUNAL | Robust Selection of Cluster Number K |

CommunityCorrelogram | Ecological Community Correlogram |

Comp2ROC | Compare Two ROC Curves that Intersect |

compactr | Creates empty plots with compact axis notation |

compare | Comparing Objects for Differences |

compareC | Compare Two Correlated C Indices with Right-censored Survival Outcome |

CompareCausalNetworks | Interface to Diverse Estimation Methods of Causal Networks |

compareDF | Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure |

compareGroups | Descriptive Analysis by Groups |

compareODM | comparison of medical forms in CDISC ODM format |

CompareTests | Correct for Verification Bias in Diagnostic Accuracy & Agreement |

comparison | Multivariate likelihood ratio calculation and evaluation |

compeir | Event-specific incidence rates for competing risks data |

compendiumdb | Tools for Retrieval and Storage of Functional Genomics Data |

CompGLM | Conway-Maxwell-Poisson GLM and distribution functions |

compHclust | Complementary Hierarchical Clustering |

Compind | Composite Indicators Functions |

ComplexAnalysis | Numerically Evaluate Integrals and Derivatives (also Higher Order) of Vector- And Complex-Valued Functions |

complmrob | Robust Linear Regression with Compositional Data as Covariates |

CompLognormal | Functions for actuarial scientists |

compoisson | Conway-Maxwell-Poisson Distribution |

COMPoissonReg | Conway-Maxwell Poisson (COM-Poisson) Regression |

Compositional | Compositional Data Analysis |

compositions | Compositional Data Analysis |

compound.Cox | Regression Estimation Based on the Compound Covariate Method Under the Cox Proportional Hazard Model |

Compounding | Computing Continuous Distributions |

CompQuadForm | Distribution function of quadratic forms in normal variables |

CompR | Paired Comparison Data Analysis |

CompRandFld | Composite-Likelihood Based Analysis of Random Fields |

compute.es | Compute Effect Sizes |

Conake | Continuous Associated Kernel Estimation |

concatenate | Human-Friendly Text from Unknown Strings |

ConConPiWiFun | Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions |

concor | Concordance |

concordance | Product Concordance |

concreg | Concordance regression |

cond | Approximate conditional inference for logistic and loglinear models |

condformat | Conditional Formatting in Data Frames |

condGEE | Parameter estimation in conditional GEE for recurrent event gap times |

condmixt | Conditional Density Estimation with Neural Network Conditional Mixtures |

condMVNorm | Conditional Multivariate Normal Distribution |

CONDOP | Condition-Dependent Operon Predictions |

CondReg | Condition Number Regularized Covariance Estimation |

condSURV | Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data |

condvis | Conditional Visualization for Statistical Models |

coneproj | Primal or Dual Cone Projections with Routines for Constrained Regression |

conf.design | Construction of factorial designs |

confidence | Confidence Estimation of Environmental State Classifications |

conformal | Conformal Prediction for Regression and Classification |

confreq | Configural Frequencies Analysis Using Log-Linear Modeling |

conicfit | Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov |

conics | Plot Conics |

conjoint | Conjoint analysis package |

ConjointChecks | A package to check the cancellation axioms of conjoint measurement |

connect3 | A Tool for Reproducible Research by Converting 'LaTeX' Files Generated by R Sweave to Rich Text Format Files |

ConnMatTools | Tools for working with connectivity matrices |

conover.test | Conover-Iman Test of Multiple Comparisons Using Rank Sums |

ConSpline | Partial Linear Least-Squares Regression using Constrained Splines |

ConsRank | Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach |

constrainedKriging | Constrained, Covariance-Matching Constrained and Universal Point or Block Kriging |

ContaminatedMixt | Model-Based Clustering and Classification with the Multivariate Contaminated Normal Distribution |

contfrac | Continued fractions |

conting | Bayesian Analysis of Contingency Tables |

contoureR | Contouring of Non-Regular Three-Dimensional Data |

contrast | A collection of contrast methods |

controlTest | Median Comparison for Two-Sample Right-Censored Survival Data |

ConvCalendar | Converts dates between calendars |

ConvergenceConcepts | Seeing convergence concepts in action |

convertGraph | Convert Graphical Files Format |

convevol | Quantifies and assesses the significance of convergent evolution |

convoSPAT | Convolution-Based Nonstationary Spatial Modeling |

cooccur | Probabilistic Species Co-Occurrence Analysis in R |

coop | Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations |

cooptrees | Cooperative aspects of optimal trees in weighted graphs |

copBasic | General Bivariate Copula Theory and Many Utility Functions |

copCAR | Fitting the copCAR Regression Model for Discrete Areal Data |

cope | Coverage Probability Excursion (CoPE) Sets |

copula | Multivariate Dependence with Copulas |

CopulaDTA | Copula Based Bivariate Beta-Binomial Model for Diagnostic Test Accuracy Studies |

copulaedas | Estimation of Distribution Algorithms Based on Copulas |

Copula.Markov | Estimation and Statistical Process Control Under Copula-Based Time Series Models |

CopulaRegression | Bivariate Copula Based Regression Models |

CopulaREMADA | Copula Mixed Effect Models for Bivariate and Trivariate Meta-Analysis of Diagnostic Test Accuracy Studies |

CopyDetect | Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests |

CopyNumber450kCancer | Baseline Correction for Copy Number Data from Cancer Samples |

corclass | Correlational Class Analysis |

corcounts | Generate correlated count random variables |

cord | Community Estimation in G-Models via CORD |

CORE | Cores of Recurrent Events |

CORElearn | Classification, Regression and Feature Evaluation |

coreNLP | Wrappers Around Stanford CoreNLP Tools |

coreTDT | TDT for compound heterozygous and recessive models |

corHMM | Analysis of Binary Character Evolution |

corkscrew | Preprocessor for Data Modeling |

CORM | The Clustering of Regression Models Method |

corpcor | Efficient Estimation of Covariance and (Partial) Correlation |

corpora | Statistics and data sets for corpus frequency data |

CorrBin | Nonparametrics with Clustered Binary and Multinomial Data |

CorReg | Linear Regression Based on Linear Structure Between Covariates |

corregp | Functions and Methods for Correspondence Regression |

Correlplot | A collection of functions for graphing correlation matrices |

corrgram | Plot a Correlogram |

CorrMixed | Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models |

corrplot | Visualization of a Correlation Matrix |

corrsieve | CorrSieve |

corTools | Tools for processing data after a Genome Wide Association Study |

COSINE | COndition SpecIfic sub-NEtwork |

cosinor | Tools for estimating and predicting the cosinor model |

cosmoFns | Functions for cosmological distances, times, luminosities, etc |

CosmoPhotoz | Photometric redshift estimation using generalized linear models |

cosmosR | cosmosR |

cosso | Fit Regularized Nonparametric Regression Models Using COSSO Penalty |

costat | Time series costationarity determination |

cotrend | Consistant Cotrend Rank Selection |

couchDB | Connect and work with couchDB databases |

COUNT | Functions, data and code for count data |

Countr | Flexible Univariate and Bivariate Count Process Probability |

countrycode | Convert Country Names and Country Codes |

CountsEPPM | Mean and Variance Modeling of Count Data |

COUSCOus | A Residue-Residue Contact Detecting Method |

covafillr | Local Polynomial Regression of State Dependent Covariates in State-Space Models |

covBM | Brownian Motion Processes for 'nlme'-Models |

covLCA | Latent Class Models with Covariate Effects on Underlying and Measured Variables |

covmat | Covariance Matrix Estimation |

covr | Test Coverage for Packages |

covreg | A simultaneous regression model for the mean and covariance |

covRobust | Robust Covariance Estimation via Nearest Neighbor Cleaning |

CovSel | Model-Free Covariate Selection |

CovSelHigh | Model-Free Covariate Selection in High Dimensions |

covsep | Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable |

covTest | Computes covariance test for adaptive linear modelling |

cowplot | Streamlined Plot Theme and Plot Annotations for 'ggplot2' |

cowsay | Messages, Warnings, Strings with Ascii Animals |

CoxBoost | Cox models by likelihood based boosting for a single survival endpoint or competing risks |

coxinterval | Cox-Type Models for Interval-Censored Data |

coxme | Mixed Effects Cox Models |

Coxnet | Regularized Cox Model |

coxphf | Cox regression with Firth's penalized likelihood |

coxphw | Weighted Estimation in Cox Regression |

CoxPlus | Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects |

CoxRidge | Cox Models with Dynamic Ridge Penalties |

coxrobust | Robust Estimation in Cox Model |

coxsei | Fitting a CoxSEI Model |

cp4p | Calibration Plot for Proteomics |

cpa | Confirmatory Path Analysis through the d-sep tests |

cpca | Methods to perform Common Principal Component Analysis (CPCA) |

CPE | Concordance Probability Estimates in Survival Analysis |

CpGassoc | Association Between Methylation and a Phenotype of Interest |

cpgen | Parallelized Genomic Prediction and GWAS |

CpGFilter | CpG Filtering Method Based on Intra-class Correlation Coefficients |

CPHshape | Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model |

cpk | Clinical Pharmacokinetics |

cplexAPI | R Interface to C API of IBM ILOG CPLEX |

cplm | Compound Poisson Linear Models |

cpm | Sequential and Batch Change Detection Using Parametric and Nonparametric Methods |

CPMCGLM | Correction of the pvalue after multiple coding |

Cprob | Conditional probability function of a competing event |

cqrReg | Quantile, Composite Quantile Regression and Regularized Versions |

cquad | Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data |

CR | Power Calculation for Weighted Log-Rank Tests in Cure Rate Models |

CRAC | Cosmology R Analysis Code |

crackR | Probabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures |

cramer | Multivariate nonparametric Cramer-Test for the two-sample-problem |

crandatapkgs | Find Data-Only Packages on CRAN |

crank | Completing Ranks |

cranlogs | Download Logs from the 'RStudio' 'CRAN' Mirror |

crantastic | Various R tools for http://crantastic.org/ |

crawl | Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data |

crayon | Colored Terminal Output |

crblocks | Categorical Randomized Block Data Analysis |

crch | Censored Regression with Conditional Heteroscedasticity |

CreditMetrics | Functions for calculating the CreditMetrics risk model |

creditr | Credit Default Swaps in R |

credule | Credit Default Swap Functions |

CRF | CRF - Conditional Random Fields |

cricketr | Analyze Cricketers Based on ESPN Cricinfo Statsguru |

crimCV | Group-Based Modelling of Longitudinal Data |

crimelinkage | Statistical Methods for Crime Series Linkage |

CRM | Continual Reassessment Method (CRM) for Phase I Clinical Trials |

crmn | CCMN and other noRMalizatioN methods for metabolomics data |

crmPack | Object-Oriented Implementation of CRM Designs |

crn | Downloads and Builds datasets for Climate Reference Network |

crop | Graphics Cropping Tool |

CrossClustering | A Partial Clustering Algorithm with Automatic Estimation of the Number of Clusters and Identification of Outliers |

crossdes | Construction of Crossover Designs |

crossmatch | The Cross-match Test |

Crossover | Analysis and Search of Crossover Designs |

crossReg | Confidence intervals for crossover points of two simple regression lines |

crossval | Generic Functions for Cross Validation |

crp.CSFP | CreditRisk+ Portfolio Model |

crqa | Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series |

crrp | Penalized Variable Selection in Competing Risks Regression |

crrSC | Competing risks regression for Stratified and Clustered data |

crrstep | Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model |

crs | Categorical Regression Splines |

crskdiag | Diagnostics for Fine and Gray Model |

crsnls | Nonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe' |

crtests | Classification and Regression Tests |

CRTgeeDR | Doubly Robust Inverse Probability Weighted Augmented GEE Estimator |

CRTSize | Sample Size Estimation Functions for Cluster Randomized Trials |

crunch | Crunch.io Data Tools |

cruts | Interface to Climatic Research Unit Time-Series Version 3.21 Data |

CrypticIBDcheck | Identifying cryptic relatedness in genetic association studies |

CryptRndTest | Statistical Tests for Cryptographic Randomness |

csampling | Functions for Conditional Simulation in Regression-Scale Models |

cSFM | Covariate-adjusted Skewed Functional Model (cSFM) |

cshapes | CShapes Dataset and Utilities |

cslogistic | Conditionally Specified Logistic Regression |

csn | Closed Skew-Normal Distribution |

csrplus | Methods to Test Hypotheses on the Distribution of Spatial Point Processes |

csSAM | csSAM - cell-specific Significance Analysis of Microarrays |

cstar | Substantive significance testing for regression estimates and marginal effects |

csvread | Fast Specialized CSV File Loader |

ctmcmove | Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains |

ctmm | Continuous-Time Movement Modeling |

cts | Continuous Time Autoregressive Models |

ctsem | Continuous Time Structural Equation Modelling |

CTT | Classical Test Theory Functions |

CTTShiny | Classical Test Theory via Shiny |

ctv | CRAN Task Views |

CUB | A Class of Mixture Models for Ordinal Data |

cubature | Adaptive multivariate integration over hypercubes |

cubfits | Codon Usage Bias Fits |

Cubist | Rule- and Instance-Based Regression Modeling |

cudaBayesreg | CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis |

cudaBayesregData | Data sets for the examples used in the package "cudaBayesreg" |

cudia | CUDIA Cross-level Imputation |

CUFF | Charles's Utility Function using Formula |

CUMP | Analyze Multivariate Phenotypes by Combining Univariate results |

cumplyr | Extends ddply to allow calculation of cumulative quantities |

cumSeg | Change point detection in genomic sequences |

curl | A Modern and Flexible Web Client for R |

curlconverter | Tools to Transform 'cURL' Command-Line Calls to 'httr' Requests |

currentSurvival | Estimation of CCI and CLFS Functions |

curvetest | The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities |

curvHDR | Filtering of Flow Cytometry Samples |

cusp | Cusp-Catastrophe Model Fitting Using Maximum Likelihood |

customizedTraining | Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models |

CUSUMdesign | Compute Decision Interval and Average Run Length for CUSUM Charts |

cutoffR | CUTOFF: A Spatio-temporal Imputation Method |

cuttlefish.model | An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model |

cvAUC | Cross-Validated Area Under the ROC Curve Confidence Intervals |

CVcalibration | Estimation of the Calibration Equation with Error-in Observations |

cvplogistic | Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm |

cvq2 | Calculate the predictive squared correlation coefficient |

CVST | Fast Cross-Validation via Sequential Testing |

CVThresh | Level-Dependent Cross-Validation Thresholding |

cvTools | Cross-validation tools for regression models |

CVTuningCov | Regularized Estimators of Covariance Matrices with CV Tuning |

cvxbiclustr | Convex Biclustering Algorithm |

cvxclustr | Splitting methods for convex clustering |

cwhmisc | Miscellaneous Functions for Math, Plotting, Printing, Statistics, Strings, and Tools |

cwm | Cluster Weighted Models by EM algorithm |

cxxfunplus | extend cxxfunction by saving the dynamic shared objects |

cycleRtools | Tools for Cycling Data Analysis |

cyclocomp | Cyclomatic Complexity of R Code |

cycloids | cycloids |

cymruservices | Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services |

cyphid | Cycle and Phase Identification for mastication data |

cystiSim | Agent-Based Model for Taenia_solium Transmission and Control |

cytoDiv | Cytometric diversity indices |

D2C | Predicting Causal Direction from Dependency Features |

d3heatmap | Interactive Heat Maps Using 'htmlwidgets' and 'D3.js' |

D3M | Two Sample Test with Wasserstein Metric |

d3Network | Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R |

DAAG | Data Analysis and Graphics Data and Functions |

DAAGbio | Data Sets and Functions, for demonstrations with expression arrays and gene sequences |

DAAGxtras | Data Sets and Functions, supplementary to DAAG |

dad | Three-Way Data Analysis Through Densities |

dae | Functions Useful in the Design and ANOVA of Experiments |

daewr | Design and Analysis of Experiments with R |

daff | Diff, Patch and Merge for Data.frames |

dafs | Data analysis for forensic scientists |

dagbag | Learning directed acyclic graphs (DAGs) through bootstrap aggregating |

DAGGER | Consensus genetic maps |

dagitty | Graphical Analysis of Structural Causal Models |

dagR | R functions for directed acyclic graphs |

Daim | Diagnostic accuracy of classification models |

DAISIE | Dynamical Assembly of Islands by Speciation, Immigration and Extinction |

DAKS | Data Analysis and Knowledge Spaces |

DALY | DALY Calculator - A GUI for stochastic DALY calculation in R |

DAMisc | Dave Armstrong's Miscellaneous Functions |

DAMOCLES | Dynamic Assembly Model of Colonization, Local Extinction and Speciation |

dams | Dams in the United States from the National Inventory of Dams (NID) |

DandEFA | Dandelion Plot for R-Mode Exploratory Factor Analysis |

darch | Package for Deep Architectures and Restricted Boltzmann Machines |

Dark | The Analysis of Dark Adaptation Data |

darts | Statistical Tools to Analyze Your Darts Game |

dashboard | Interactive Data Visualization with D3.js |

DatABEL | File-Based Access to Large Matrices Stored on HDD in Binary Format |

datacheck | Tools for Checking Data Consistency |

datacheckr | Data Checking |

DataClean | Data Cleaning |

DataCombine | Tools for Easily Combining and Cleaning Data Sets |

datadr | Divide and Recombine for Large, Complex Data |

DataExplorer | Data Explorer |

dataframes2xls | dataframes2xls writes data frames to xls files |

datafsm | Estimating Finite State Machine Models from Data |

DataLoader | Import Multiple File Types |

datamap | A system for mapping foreign objects to R variables and environments |

datamart | Unified access to your data sources |

dataonderivatives | Easily Source Publicly Available Data on Derivatives |

datapack | A Flexible Container to Transport and Manipulate Data and Associated Resources |

dataQualityR | Performs variable level data quality checks and generates summary statistics |

dataRetrieval | Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data |

datarobot | DataRobot Predictive Modeling API |

datastepr | An Implementation of a SAS-Style Data Step |

data.table | Extension of Data.frame |

data.tree | General Purpose Hierarchical Data Structure |

datautils | Support functions for packages VBmix, semisupKernelPCA, and patchPlot |

dataview | Data and Workspace Browser for Terminals |

date | Functions for handling dates |

DATforDCEMRI | Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI |

dave | Functions for "Data Analysis in Vegetation Ecology" |

Davies | The Davies quantile function |

dawai | Discriminant Analysis with Additional Information |

dbarts | Discrete Bayesian Additive Regression Trees Sampler |

dbConnect | Provides a graphical user interface to connect with databases that use MySQL |

dbEmpLikeGOF | Goodness-of-fit and two sample comparison tests using sample entropy |

dbEmpLikeNorm | Test for joint assessment of normality |

DBEST | Detecting Breakpoints and Estimating Segments in Trend (DBEST) |

DBGSA | methods of distance-based gene set functional enrichment analysis |

DBI | R Database Interface |

DBItest | Testing 'DBI' Back Ends |

DBKGrad | Discrete Beta Kernel Graduation of Mortality Data |

dblcens | Compute the NPMLE of distribution from doubly censored data |

dbmss | Distance-Based Measures of Spatial Structures |

dbscan | Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms |

dbstats | Distance-Based Statistics |

DCchoice | Analyzing Dichotomous Choice Contingent Valuation Data |

dcemriS4 | A Package for Image Analysis of DCE-MRI (S4 Implementation) |

DCGL | Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data |

dcGOR | Analysis of Ontologies and Protein Domain Annotations |

dChipIO | Methods for Reading dChip Files |

DCL | Claims Reserving under the Double Chain Ladder Model |

dclone | Data Cloning and MCMC Tools for Maximum Likelihood Methods |

DCluster | Functions for the Detection of Spatial Clusters of Diseases |

dcmle | Hierarchical Models Made Easy with Data Cloning |

dcmr | Attribute profile estimation using Diagnostic Classification Models and MCMC |

DCODE | List Linear n-Peptide Constraints for Overlapping Protein Regions |

dCovTS | Distance Covariance and Correlation for Time Series Analysis |

dcv | Conventional Cross-validation statistics for climate-growth model |

ddalpha | Depth-Based Classification and Calculation of Data Depth |

DDD | Diversity-Dependent Diversification |

ddeploy | Wrapper for the Duke Deploy REST API |

DDHFm | Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays) |

DDIwR | DDI with R |

ddR | Distributed Data Structures in R |

DDRTree | Learning Principal Graphs with DDRTree |

ddst | Data driven smooth test |

deal | Learning Bayesian Networks with Mixed Variables |

deamer | Deconvolution density estimation with adaptive methods for a variable prone to measurement error |

debug | MVB's debugger for R |

DECIDE | DEComposition of Indirect and Direct Effects |

decision | Statistical Decision Analysis |

DecisionCurve | Calculate and Plot Decision Curves |

decisionSupport | Quantitative Support of Decision Making under Uncertainty |

decode | Differential Co-Expression and Differential Expression Analysis |

decoder | Decode Coded Variables to Plain Text (and Vice Versa) |

decompr | Global-Value-Chain Decomposition |

decon | Deconvolution Estimation in Measurement Error Models |

deconstructSigs | Identifies Signatures Present in a Tumor Sample |

Deducer | A Data Analysis GUI for R |

DeducerExtras | Additional dialogs and functions for Deducer |

DeducerPlugInExample | Deducer Plug-in Example |

DeducerPlugInScaling | Reliability and factor analysis plugin |

DeducerSpatial | Deducer for spatial data analysis |

DeducerSurvival | Add Survival Dialogue to Deducer |

DeducerText | Deducer GUI for Text Data |

deducorrect | Deductive Correction, Deductive Imputation, and Deterministic Correction |

deductive | Data Correction and Imputation Using Deductive Methods |

deepboost | Deep Boosting Ensemble Modeling |

deeplearning | An Implementation of Deep Neural Network for Regression and Classification |

deepnet | deep learning toolkit in R |

DEEPR | Dirichlet-multinomial Evolutionary Event Profile Randomization (DEEPR) test |

deformula | Integration of One-Dimensional Functions with Double Exponential Formulas |

degenes | Detection of differentially expressed genes |

degreenet | Models for Skewed Count Distributions Relevant to Networks |

Delaporte | Statistical Functions for the Delaporte Distribution |

deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation |

DeLorean | Estimates Pseudotimes for Single Cell Expression Data |

delt | Estimation of Multivariate Densities Using Adaptive Partitions |

deltaPlotR | Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method |

Demerelate | Functions to calculate relatedness on diploid genetic data |

DEMEtics | Evaluating the genetic differentiation between populations based on Gst and D values |

demi | Differential Expression from Multiple Indicators |

deming | Deming, Thiel-Sen and Passing-Bablock Regression |

demography | Forecasting mortality, fertility, migration and population data |

demoKde | Kernel Density Estimation for Demonstration Purposes |

DEMOVA | DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set |

dendextend | Extending R's Dendrogram Functionality |

dendextendRcpp | Faster Dendrogram Manipulation using 'Rcpp' |

dendroextras | Extra functions to cut, label and colour dendrogram clusters |

dendrometeR | Analyzing Dendrometer Data |

DendSer | Dendrogram seriation: ordering for visualisation |

dendsort | Modular Leaf Ordering Methods for Dendrogram Nodes |

DengueRT | Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak |

denovolyzeR | Statistical Analyses of De Novo Genetic Variants |

denpro | Visualization of Multivariate Functions, Sets, and Data |

densityClust | Clustering by Fast Search and Find of Density Peaks |

Density.T.HoldOut | Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation |

DensParcorr | Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks |

densratio | Density Ratio Estimation |

denstrip | Density strips and other methods for compactly illustrating distributions |

DEoptim | Global Optimization by Differential Evolution |

DEoptimR | Differential Evolution Optimization in Pure R |

depend.truncation | Statistical Inference for Parametric and Semiparametric Models Based on Dependently Truncated Data |

depmix | Dependent Mixture Models |

depmixS4 | Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4 |

depth | Depth functions tools for multivariate analysis |

depth.plot | Multivariate Analogy of Quantiles |

DepthProc | Statistical Depth Functions for Multivariate Analysis |

depthTools | Depth Tools Package |

dequer | An R 'Deque' Container |

Deriv | Symbolic Differentiation |

derivmkts | Functions and R Code to Accompany Derivatives Markets |

desc | Manipulate DESCRIPTION Files |

descomponer | Seasonal Adjustment by Frequency Analysis |

descr | Descriptive Statistics |

DescribeDisplay | An Interface to the DescribeDisplay GGobi Plugin |

describer | Describe Data in R Using Common Descriptive Statistics |

DescTools | Tools for Descriptive Statistics |

deseasonalize | Optimal deseasonalization for geophysical time series using AR fitting |

designGG | Computational tool for designing genetical genomics experiments |

designGLMM | Finding Optimal Block Designs for a Generalised Linear Mixed Model |

designmatch | Construction of Optimally Matched Samples for Randomized Experiments and Observational Studies that are Balanced by Design |

desiR | Desirability Functions for Ranking, Selecting, and Integrating Data |

desirability | Desirability Function Optimization and Ranking |

desire | Desirability functions in R |

DESnowball | Bagging with Distance-based Regression for Differential Gene Expression Analyses |

deSolve | Solvers for Initial Value Problems of Differential Equations (ODE, DAE, DDE) |

DESP | Estimation of Diagonal Elements of Sparse Precision-Matrices |

desplot | Plotting Field Plans for Agricultural Experiments |

detect | Analyzing Wildlife Data with Detection Error |

detector | Detect Data Containing Personally Identifiable Information |

deTestSet | Testset for differential equations |

DetMCD | Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter) |

DetR | Suite of Deterministic and Robust Algorithms for Linear Regression |

detrendeR | Start the detrendeR Graphical User Interface (GUI) |

DetSel | A computer program to detect markers responding to selection |

devEMF | EMF Graphics Output Device |

Devore7 | Data sets from Devore's "Prob and Stat for Eng (7th ed)" |

devtools | Tools to Make Developing R Packages Easier |

df2json | Convert a dataframe to JSON |

dfcomb | Phase I/II Adaptive Dose-Finding Design for Combination Studies |

dfcrm | Dose-finding by the continual reassessment method |

dfexplore | Explore data.frames by plotting NA and classes of each variable |

DFIT | Differential Functioning of Items and Tests |

dfmta | Phase I/II Adaptive Dose-Finding Design for MTA |

dfoptim | Derivative-free Optimization |

dga | Capture-Recapture Estimation using Bayesian Model Averaging |

dglars | Differential Geometric LARS (dgLARS) method |

dglm | Double Generalized Linear Models |

dgmb | Simulating Data for PLS Mode B Structural Models |

dgof | Discrete Goodness-of-Fit Tests |

dhglm | Double Hierarchical Generalized Linear Models |

dHSIC | Independence Testing via Hilbert Schmidt Independence Criterion |

diagonals | Block Diagonal Extraction or Replacement |

diagram | Functions for visualising simple graphs (networks), plotting flow diagrams |

DiagrammeR | Create Graph Diagrams and Flowcharts Using R |

DiagrammeRsvg | Export DiagrammeR Graphviz Graphs as SVG |

DiagTest3Grp | Diagnostic test summary measures for three ordinal groups |

DiallelAnalysisR | Diallel Analysis with R |

diaplt | Beads Summary Plot of Ranges |

dice | Calculate probabilities of various dice-rolling events |

DiceDesign | Designs of Computer Experiments |

DiceEval | Construction and Evaluation of Metamodels |

DiceKriging | Kriging Methods for Computer Experiments |

DiceOptim | Kriging-Based Optimization for Computer Experiments |

DiceView | Plot methods for computer experiments design and surrogate |

dichromat | Color Schemes for Dichromats |

dicionariosIBGE | Dictionaries for reading microdata surveys from IBGE |

DidacticBoost | A Simple Implementation and Demonstration of Gradient Boosting |

dielectric | Defines some physical constants and dielectric functions commonly used in optics, plasmonics |

diezeit | R Interface to the ZEIT ONLINE Content API |

DIFboost | Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques |

DiffCorr | Analyzing and Visualizing Differential Correlation Networks in Biological Data |

diffdepprop | Calculates Confidence Intervals for two Dependent Proportions |

diffEq | Functions from the book Solving Differential Equations in R |

diffeR | Metrics of Difference for Comparing Pairs of Maps |

diffIRT | Diffusion IRT Models for Response and Response Time Data |

diffr | Display Differences Between Two Files using Codediff Library |

diffractometry | Baseline identification and peak decomposition for x-ray diffractograms |

diffusionMap | Diffusion map |

DiffusionRgqd | Inference and Analysis for Generalized Quadratic Diffusions |

DiffusionRjgqd | Inference and Analysis for Jump Generalized Quadratic Diffusions |

DIFlasso | A penalty approach to Differential Item Functioning in Rasch Models |

difR | Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF) |

DIFtree | Item Focused Trees for the Identification of Items in Differential Item Functioning |

digest | Create Compact Hash Digests of R Objects |

Digiroo2 | An application programming interface for generating null models of social contacts based on individuals' space use |

digitalPCR | Estimate Copy Number for Digital PCR |

dils | Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links |

DIME | DIME (Differential Identification using Mixture Ensemble) |

dina | Bayesian Estimation of DINA Model |

dinamic | DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors |

diptest | Hartigan's Dip Test Statistic for Unimodality - Corrected |

DIRECT | Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior |

Directional | Directional Statistics |

directlabels | Direct Labels for Multicolor Plots |

directPA | Direction Analysis for Pathways and Kinases |

DirichletReg | Dirichlet Regression in R |

dirmult | Estimation in Dirichlet-Multinomial distribution |

Disake | Discrete associated kernel estimators |

discgolf | Discourse 'API' Client |

disclap | Discrete Laplace Exponential Family |

disclapmix | Discrete Laplace Mixture Inference using the EM Algorithm |

DiscML | DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood |

DiscreteInverseWeibull | Discrete Inverse Weibull Distribution |

DiscreteLaplace | Discrete Laplace Distributions |

discreteMTP | Multiple testing procedures for discrete test statistics |

discreteRV | Create and Manipulate Discrete Random Variables |

DiscreteWeibull | Discrete Weibull Distributions (Type 1 and 3) |

discretization | Data preprocessing, discretization for classification |

discrimARTs | Discrimination of Alternative Reproductive Tactics (ARTs) |

DiscriMiner | Tools of the Trade for Discriminant Analysis |

discSurv | Discrete Time Survival Analysis |

diseasemapping | Modelling Spatial Variation in Disease Risk for Areal Data |

DisimForMixed | Calculate Dissimilarity Matrix for Dataset with Mixed Attributes |

diskImageR | A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays |

dismo | Species Distribution Modeling |

disp2D | 2D Hausdorff and Simplex Dispersion Orderings |

disparityfilter | Disparity Filter Algorithm for Weighted Networks |

displayHTS | displayHTS |

dispmod | Dispersion models |

disposables | Create Disposable R Packages for Testing |

dissUtils | Utilities for making pairwise comparisons of multivariate data |

Distance | Distance Sampling Detection Function and Abundance Estimation |

distance.sample.size | Calculates Study Size Required for Distance Sampling |

DistatisR | DiSTATIS Three Way Metric Multidimensional Scaling |

distcomp | Computations over Distributed Data without Aggregation |

distfree.cr | Distribution-free confidence region (distfree.cr) |

distillery | Method Functions for Confidence Intervals and to Distill Information from an Object |

distory | Distance Between Phylogenetic Histories |

distr | Object Oriented Implementation of Distributions |

distrDoc | Documentation for 'distr' Family of R Packages |

distrEllipse | S4 classes for elliptically contoured distributions |

distrEx | Extensions of Package 'distr' |

DistributionUtils | Distribution Utilities |

distrMod | Object Oriented Implementation of Probability Models |

distrom | Distributed Multinomial Regression |

distrRmetrics | Distribution Classes for Distributions from Rmetrics |

distrSim | Simulation Classes Based on Package 'distr' |

distrTeach | Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School |

distrTEst | Estimation and Testing Classes Based on Package 'distr' |

divagis | Provides tools for quality checks of georeferenced plant species accessions |

DivE | Diversity Estimator |

diveMove | Dive Analysis and Calibration |

diverse | Diversity Measures for Complex Systems |

diversitree | Comparative Phylogenetic Analyses of Diversification |

diveRsity | A Comprehensive, General Purpose Population Genetics Analysis Package |

DiversityOccupancy | Building Diversity Models from Multiple Species Occupancy Models |

DiversitySampler | Functions for re-sampling a community matrix to compute diversity indices at different sampling levels |

DivMelt | HRM Diversity Assay Analysis Tool |

divo | Tools for Analysis of Diversity and Similarity in Biological Systems |

dixon | Nearest Neighbour Contingency Table Analysis |

DJL | Distance Measure Based Judgment and Learning |

dkDNA | Diffusion Kernels on a Set of Genotypes |

dlm | Bayesian and Likelihood Analysis of Dynamic Linear Models |

dlmap | Detection Localization Mapping for QTL |

dlmodeler | Generalized Dynamic Linear Modeler |

DLMtool | Data-Limited Methods Toolkit |

dlnm | Distributed Lag Non-Linear Models |

dlsem | Distributed-Lag Structural Equation Modelling |

dma | Dynamic Model Averaging |

dml | Distance Metric Learning in R |

dmm | Dyadic Mixed Model for Pedigree Data |

dMod | Dynamic Modeling and Parameter Estimation in ODE Models |

DMR | Delete or Merge Regressors for linear model selection |

dmt | Dependency Modeling Toolkit |

DMwR | Functions and data for "Data Mining with R" |

dna | Differential Network Analysis |

DNAprofiles | DNA Profiling Evidence Analysis |

DNAseqtest | Generating and Testing DNA Sequences |

DNAtools | Tools for analysing forensic genetic DNA data |

dnc | Dynamic Network Clustering |

DnE | Distribution and Equation |

dnet | Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology |

DNMF | Discriminant Non-Negative Matrix Factorization |

DOBAD | Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains |

doBy | Groupwise Statistics, LSmeans, Linear Contrasts, Utilities |

docopt | Command-Line Interface Specification Language |

docopulae | Optimal Designs for Copula Models |

documair | Automatic Documentation for R packages |

docxtractr | Extract Data Tables from Microsoft Word Documents |

Dodge | Functions for Acceptance Sampling Ideas originated by H.F. Dodge |

DoE.base | Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages |

DoE.wrapper | Wrapper package for design of experiments functionality |

doMC | Foreach Parallel Adaptor for 'parallel' |

Dominance | ADI (average dominance index), social network graphs with dual directions, and music notation graph |

domino | R Console Bindings for the 'Domino Command-Line Client' |

doMPI | Foreach parallel adaptor for the Rmpi package |

doParallel | Foreach Parallel Adaptor for the 'parallel' Package |

doRedis | Foreach parallel adapter for the rredis package |

doRNG | Generic Reproducible Parallel Backend for foreach Loops |

DoseFinding | Planning and Analyzing Dose Finding Experiments |

doSNOW | Foreach Parallel Adaptor for the 'snow' Package |

dosresmeta | Performing Multivariate Dose-Response Meta-Analysis |

dostats | Compute Statistics Helper Functions |

DOT | Render and Export DOT Graphs in R |

dotenv | Load Environment Variables from '.env' |

dotwhisker | Dot-and-Whisker Plots of Regression Results |

DoubleCone | Test against parametric regression function |

DoubleExpSeq | Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter |

DOvalidation | Local Linear Hazard Estimation with Do-Validated and Cross-Validated Bandwidths |

Dowd | Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk |

downloader | Download Files over HTTP and HTTPS |

downscale | Downscaling Species Occupancy |

dpa | Dynamic Path Approach |

dpcR | Digital PCR Analysis |

dpglasso | Primal Graphical Lasso |

dplR | Dendrochronology Program Library in R |

dplRCon | Concordance for Dendroclimatology |

dplyr | A Grammar of Data Manipulation |

dpmixsim | Dirichlet Process Mixture model simulation for clustering and image segmentation |

dpmr | Data Package Manager for R |

DPpackage | Bayesian nonparametric modeling in R |

dprep | Data Pre-Processing and Visualization Functions for Classification |

dr | Methods for Dimension Reduction for Regression |

drat | Drat R Archive Template |

drawExpression | Visualising R syntax through graphics |

DRaWR | Discriminative Random Walk with Restart |

DrBats | Data Representation: Bayesian Approach That's Sparse |

drc | Analysis of Dose-Response Curves |

drfit | Dose-Response Data Evaluation |

drgee | Doubly Robust Generalized Estimating Equations |

DRIP | Discontinuous Regression and Image Processing |

drLumi | Multiplex Immunoassays Data Analysis |

drm | Regression and association models for repeated categorical data |

drmdel | Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples |

dropR | Analyze Drop Out of an Experiment or Survey |

drsmooth | Dose-Response Modeling with Smoothing Splines |

DrugClust | Implementation of a Machine Learning Framework for Predicting Drugs Side Effects |

ds | Descriptive Statistics |

dsample | Discretization-Based Direct Random Sample Generation |

DSBayes | Bayesian subgroup analysis in clinical trials |

dse | Dynamic Systems Estimation (Time Series Package) |

DSL | Distributed Storage and List |

dslice | Dynamic Slicing |

dsm | Density Surface Modelling of Distance Sampling Data |

DSpat | Spatial Modelling for Distance Sampling Data |

dst | Using Dempster-Shafer Theory |

DStree | Recursive Partitioning for Discrete-Time Survival Trees |

DSviaDRM | Exploring Disease Similarity in Terms of Dysfunctional Regulatory Mechanisms |

DT | A Wrapper of the JavaScript Library 'DataTables' |

dtables | Simplifying Descriptive Frequencies and Statistics |

DTComPair | Comparison of Binary Diagnostic Tests in a Paired Study Design |

DTDA | Doubly truncated data analysis |

dti | Analysis of Diffusion Weighted Imaging (DWI) Data |

DTK | Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes |

DTMCPack | Suite of functions related to discrete-time discrete-state Markov Chains |

DTR | Estimation and Comparison of Dynamic Treatment Regimes |

DTRlearn | Learning Algorithms for Dynamic Treatment Regimes |

DTRreg | DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and Q-Learning |

dtt | Discrete Trigonometric Transforms |

dtw | Dynamic Time Warping Algorithms |

dtwclust | Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance |

dtwSat | Time-Weighted Dynamic Time Warping for Remote Sensing Time Series Analysis |

dualScale | Dual Scaling Analysis of Multiple Choice Data |

dummies | Create dummy/indicator variables flexibly and efficiently |

dummy | Automatic Creation of Dummies with Support for Predictive Modeling |

DunnettTests | Software implementation of step-down and step-up Dunnett test procedures |

dunn.test | Dunn's Test of Multiple Comparisons Using Rank Sums |

dupiR | Bayesian inference from count data using discrete uniform priors |

dvfBm | Discrete variations of a fractional Brownian motion |

DVHmetrics | Analyze Dose-Volume Histograms and Check Constraints |

dvn | Access to The Dataverse Network APIs |

DWreg | Parametric Regression for Discrete Response |

dygraphs | Interface to 'Dygraphs' Interactive Time Series Charting Library |

DYM | Did You Mean? |

dyn | Time Series Regression |

DynamicDistribution | Dynamically visualized probability distributions and their moments |

dynamicGraph | dynamicGraph |

dynamicTreeCut | Methods for Detection of Clusters in Hierarchical Clustering Dendrograms |

dynatopmodel | Implementation of the Dynamic TOPMODEL Hydrological Model |

dynBiplotGUI | Full Interactive GUI for Dynamic Biplot in R |

DynClust | Denoising and clustering for dynamical image sequence (2D or 3D)+T |

dynCorr | Dynamic Correlation Package |

dynia | Fit Dynamic Intervention Model |

dynlm | Dynamic Linear Regression |

DynNom | Dynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models |

dynpred | Companion Package to "Dynamic Prediction in Clinical Survival Analysis" |

dynRB | Dynamic Range Boxes |

dynsim | Dynamic Simulations of Autoregressive Relationships |

dynsurv | Dynamic models for survival data |

DynTxRegime | Methods for Estimating Dynamic Treatment Regimes |

DySeq | Functions for Dyadic Sequence Analyses |

e1071 | Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien |

eaf | Plots of the Empirical Attainment Function |

earlywarnings | Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries |

earth | Multivariate Adaptive Regression Splines |

EasyABC | Efficient Approximate Bayesian Computation Sampling Schemes |

easyanova | Analysis of variance and other important complementary analyzes |

easyformatr | Tools for Building Formats |

EasyHTMLReport | EasyHTMLReport |

EasyMARK | Utility functions for working with mark-recapture data |

easynls | Easy nonlinear model |

easypackages | Easy Loading and Installing of Packages |

easypower | Sample Size Estimation for Experimental Designs |

easyPubMed | Search and Retrieve Scientific Publication Records from Pubmed |

EasyStrata | Evaluation of stratified genome-wide association meta-analysis results |

easyVerification | Ensemble Forecast Verification for Large Data Sets |

eba | Elimination-by-Aspects Models |

ebal | Entropy reweighting to create balanced samples |

EbayesThresh | Empirical Bayes Thresholding and Related Methods |

ebdbNet | Empirical Bayes Estimation of Dynamic Bayesian Networks |

EBEN | Empirical Bayesian Elastic Net |

ebGenotyping | Genotyping and SNP Detection using Next Generation Sequencing Data |

EBglmnet | Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models |

EBMAforecast | Ensemble BMA Forecasting |

EBS | Exact Bayesian Segmentation |

ebSNP | Genotyping and SNP calling using single-sample next generation sequencing data |

ecb | Programmatic Access to the European Central Bank's Statistical Data Warehouse (SDW) |

ECctmc | Simulation from Endpoint-Conditioned Continuous Time Markov Chains |

ecd | Elliptic Distribution Based on Elliptic Curves |

Ecdat | Data Sets for Econometrics |

ecespa | Functions for Spatial Point Pattern Analysis |

Ecfun | Functions for Ecdat |

ecipex | Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models |

eco | Ecological Inference in 2x2 Tables |

ecodist | Dissimilarity-based functions for ecological analysis |

ecoengine | Programmatic Interface to the API Serving UC Berkeley's Natural History Data |

EcoGenetics | Spatial Analysis of Phenotypic, Genotypic and Environmental Data |

EcoHydRology | A community modeling foundation for Eco-Hydrology |

ecolMod | "A practical guide to ecological modelling - using R as a simulation platform" |

ecoreg | Ecological Regression using Aggregate and Individual Data |

ecoretriever | R Interface to the EcoData Retriever |

ecosim | Toolbox for Aquatic Ecosystem Modeling |

EcoSimR | Null Model Analysis for Ecological Data |

ECOSolveR | Embedded Conic Solver in R |

ecospace | Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks |

ecospat | Spatial Ecology Miscellaneous Methods |

ecotoxicology | Methods for Ecotoxicology |

EcoTroph | EcoTroph R package |

ecoval | Procedures for Ecological Assessment of Surface Waters |

EcoVirtual | Simulation of Ecological Models |

ecp | Non-Parametric Multiple Change-Point Analysis of Multivariate Data |

edcc | Economic Design of Control Charts |

edeaR | Exploratory and Descriptive Event-Based Data Analysis |

edeR | Email Data Extraction Using R |

edesign | Maximum Entropy Sampling |

edf | Read Data from European Data Format (EDF and EDF+) Files |

EDFIR | Estimating Discrimination Factors |

edfReader | Reading EDF(+) and BDF(+) Files |

edgar | Platform for EDGAR Filing Management |

edgebundleR | Circle Plot with Bundled Edges |

edgeCorr | Spatial Edge Correction |

edgeRun | More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data |

EDISON | Network Reconstruction and Changepoint Detection |

EditImputeCont | Simultaneous Edit-Imputation for Continuous Microdata |

editrules | Parsing, Applying, and Manipulating Data Cleaning Rules |

EDR | Estimation of the effective dimension reduction (EDR) space |

edrGraphicalTools | Provides tools for dimension reduction methods |

eechidna | Exploring Election and Census Highly Informative Data Nationally for Australia |

eegAnalysis | Tools for analysis and classification of electroencephalography (EEG) data |

eegkit | Toolkit for Electroencephalography Data |

eegkitdata | Data for package eegkit |

eel | Extended Empirical Likelihood |

EEM | Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data |

eemR | Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data |

eeptools | Convenience Functions for Education Data |

EFDR | Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images |

EffectLiteR | Average and Conditional Effects |

effects | Effect Displays for Linear, Generalized Linear, and Other Models |

EffectsRelBaseline | Test changes of a grouped response relative to baseline |

EffectStars | Visualization of Categorical Response Models |

EffectTreat | Prediction of Therapeutic Success |

efflog | The Causal Effects for a Causal Loglinear Model |

effsize | Efficient Effect Size Computation |

efreadr | Read European Fluxes CSV Files |

ega | Error Grid Analysis |

egcm | Engle-Granger Cointegration Models |

eggCounts | Hierarchical Modelling of Faecal Egg Counts |

egonet | Tool for ego-centric measures in Social Network Analysis |

EGRET | Exploration and Graphics for RivEr Trends (EGRET) |

EGRETci | Exploration and Graphics for RivEr Trends (EGRET) Confidence Intervals |

eha | Event History Analysis |

eHOF | Extended HOF (Huisman-Olff-Fresco) Models |

ei | Ecological Inference |

EIAdata | R Wrapper for the Energy Information Administration (EIA) API |

eiCompare | Compares EI, Goodman, RxC Estimates |

eigeninv | Generates (dense) matrices that have a given set of eigenvalues |

eigenmodel | Semiparametric factor and regression models for symmetric relational data |

eigenprcomp | Computes confidence intervals for principal components |

EILA | Efficient Inference of Local Ancestry |

eiPack | eiPack: Ecological Inference and Higher-Dimension Data Management |

eive | An algorithm for reducing errors-in-variable bias in simple linear regression |

eiwild | Ecological Inference with individual and aggregate data |

EL | Two-sample Empirical Likelihood |

elasso | Enhanced Least Absolute Shrinkage and Selection Operator Regression Model |

elastic | General Purpose Interface to 'Elasticsearch' |

elasticnet | Elastic-Net for Sparse Estimation and Sparse PCA |

elec | Collection of functions for statistical election audits |

elec.strat | Functions for election audits using stratified random samples |

ElemStatLearn | Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman |

elexr | Load Associated Press Election Results with Elex |

elliplot | Ellipse Summary Plot of Quantiles |

ellipse | Functions for drawing ellipses and ellipse-like confidence regions |

elliptic | elliptic functions |

elmNN | Implementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks ) |

ELMR | Extreme Machine Learning (ELM) |

EloChoice | Preference Rating for Visual Stimuli Based on Elo Ratings |

EloRating | Animal Dominance Hierarchies by Elo Rating |

elrm | Exact Logistic Regression via MCMC |

ElstonStewart | Elston-Stewart Algorithm |

ELT | Experience Life Tables |

ELYP | Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model |

EMA | Easy Microarray data Analysis |

EMbC | Expectation-Maximization Binary Clustering |

embryogrowth | Tools to Analyze the Thermal Reaction Norm of Embryo Growth |

EMC | Evolutionary Monte Carlo (EMC) algorithm |

EMCluster | EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution |

EMD | Empirical Mode Decomposition and Hilbert Spectral Analysis |

emdbook | Support Functions and Data for "Ecological Models and Data" |

emdist | Earth Mover's Distance |

emg | Exponentially Modified Gaussian (EMG) Distribution |

emil | Evaluation of Modeling without Information Leakage |

emIRT | EM Algorithms for Estimating Item Response Theory Models |

emma | Evolutionary model-based multiresponse approach |

EMMAgeo | End-Member Modelling of Grain-Size Data |

emme2 | Read and Write to an EMME/2 databank |

EMMIXcontrasts | Contrasts in mixed effects for EMMIX model with random effects |

EMMIXskew | The EM Algorithm and Skew Mixture Distribution |

EMMIXuskew | Fitting Unrestricted Multivariate Skew t Mixture Models |

EMMREML | Fitting Mixed Models with Known Covariance Structures |

emoa | Evolutionary Multiobjective Optimization Algorithms |

emojifont | Emoji Fonts for using in R |

emov | Eye Movement Analysis Package for Fixation and Saccade Detection |

EMP | Expected Maximum Profit Classification Performance Measure |

EmpiricalCalibration | Routines for Performing Empirical Calibration of Observational Study Estimates |

empiricalFDR.DESeq2 | Simulation-Based False Discovery Rate in RNA-Seq |

emplik | Empirical Likelihood Ratio for Censored/Truncated Data |

emplik2 | Empirical Likelihood Ratio Test for Two Samples with Censored Data |

EMSC | Extended Multiplicative Signal Correction |

EMT | Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data |

emulator | Bayesian emulation of computer programs |

emuR | Main Package of the EMU Speech Database Management System |

EMVC | Entropy Minimization over Variable Clusters (EMVC) |

enaR | Tools for Ecological Network Analysis |

endogMNP | R Package for Fitting Multinomial Probit Models with Endogenous Selection |

endorse | R Package for Analyzing Endorsement Experiments |

energy | E-statistics (energy statistics) |

english | Translate integers into English |

EngrExpt | Data sets from "Introductory Statistics for Engineering Experimentation" |

enigma | Client for the 'Enigma' 'API' |

ENiRG | Ecological Niche in R and GRASS |

ENMeval | Automated Runs and Evaluations of Ecological Niche Models |

ENmisc | Neuwirth miscellaneous |

enpls | Ensemble Partial Least Squares Regression |

EnQuireR | A package dedicated to questionnaires |

enRich | An R Package for the Analysis of Multiple ChIP-Seq Data |

enrichvs | Enrichment assessment of virtual screening approaches |

EnsembleBase | Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling |

ensembleBMA | Probabilistic Forecasting using Ensembles and Bayesian Model Averaging |

EnsembleCV | Extensible Package for Cross-Validation-Based Integration of Base Learners |

ensembleMOS | Ensemble Model Output Statistics |

EnsemblePCReg | Extensible Package for Principal-Component-Regression-Based Integration of Base Learners |

EnsemblePenReg | Extensible Classes and Methods for Penalized-Regression-based Integration of Base Learners |

ensurer | Ensure Values at Runtime |

entropart | Entropy Partitioning to Measure Diversity |

entropy | Estimation of Entropy, Mutual Information and Related Quantities |

EntropyEstimation | Estimation of Entropy and Related Quantities |

EntropyExplorer | Tools for Exploring Differential Shannon Entropy, Differential Coefficient of Variation and Differential Expression |

enveomics.R | Various R Functions from the Kostas Lab |

enviPat | Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry |

enviPick | Peak Picking for High Resolution Mass Spectrometry Data |

EnviroStat | Statistical Analysis of Environmental Space-Time Processes |

envlpaster | Enveloping the Aster Model |

EnvNicheR | Niche Estimation |

EnvStats | Package for Environmental Statistics, Including US EPA Guidance |

epade | Easy Plots |

epandist | Statistical Functions for the Censored and Uncensored Epanechnikov Distribution |

epanetReader | Read Epanet Files into R |

EPGLM | Gaussian Approximation of Bayesian Binary Regression Models |

Epi | A Package for Statistical Analysis in Epidemiology |

epibasix | Elementary Epidemiological Functions for Epidemiology and Biostatistics |

EpiBayes | Implements Hierarchical Bayesian Models for Epidemiological Applications |

EpiContactTrace | Epidemiological Tool for Contact Tracing |

epiDisplay | Epidemiological Data Display Package |

EpiDynamics | Dynamic Models in Epidemiology |

EpiEstim | EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves |

epifit | Flexible Modelling Functions for Epidemiological Data Analysis |

EpiModel | Mathematical Modeling of Infectious Disease |

epinet | Epidemic/Network-Related Tools |

epiR | Tools for the Analysis of Epidemiological Data |

episensr | Basic Sensitivity Analysis of Epidemiological Results |

episplineDensity | Density Estimation with Soft Information by Exponential Epi-splines |

epitools | Epidemiology Tools |

EpiWeek | Conversion Between Epidemiological Weeks and Calendar Dates |

Eplot | Plotting longitudinal series |

epoc | EPoC (Endogenous Perturbation analysis of Cancer) |

epr | Easy polynomial regression |

EQL | Extended-Quasi-Likelihood-Function (EQL) |

eqs2lavaan | EQS Output Conversion to lavaan Functions |

eqtl | Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis |

equate | Observed-Score Linking and Equating |

equateIRT | Direct, Chain and Average Equating Coefficients with Standard Errors Using IRT Methods |

equivalence | Provides Tests and Graphics for Assessing Tests of Equivalence |

erah | Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics |

erboost | Nonparametric Multiple Expectile Regression via ER-Boost |

erer | Empirical Research in Economics with R |

ergm | Fit, Simulate and Diagnose Exponential-Family Models for Networks |

ergm.count | Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges |

ergm.ego | Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data |

ergm.graphlets | ERG Modeling Based on Graphlet Properties |

ergmharris | Local Health Department network data set |

ergm.rank | Fit, Simulate and Diagnose Exponential-Family Models for Rank-Order Relational Data |

ergm.userterms | User-specified terms for the statnet suite of packages |

eRm | Extended Rasch Modeling |

ERP | Significance Analysis of Event-Related Potentials Data |

erp.easy | Event-Related Potential (ERP) Data Exploration Made Easy |

erpR | Event-related potentials (ERP) analysis, graphics and utility functions |

errint | Build Error Intervals |

ES | Edge Selection |

esaBcv | Estimate Number of Latent Factors and Factor Matrix for Factor Analysis |

ESEA | ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis |

ESG | ESG - A package for asset projection |

ESGtoolkit | Toolkit for the simulation of financial assets and interest rates models |

ESKNN | Ensemble of Subset of K-Nearest Neighbours Classifiers for Classification and Class Membership Probability Estimation |

estatapi | R Interface to e-Stat API |

EstCRM | Calibrating Parameters for the Samejima's Continuous IRT Model |

EstHer | Estimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection |

estimability | Tools for Assessing Estimability of Linear Predictions |

estout | Estimates Output |

EstSimPDMP | Estimation and Simulation for PDMPs |

etable | Easy Table |

ETAS | Modeling Earthquake Data Using ETAS Model |

etasFLP | Mixed FLP and ML Estimation of ETAS Space-Time Point Processes |

ETC | Equivalence to control |

ETLUtils | Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data |

etm | Empirical Transition Matrix |

etma | Epistasis Test in Meta-Analysis |

eulerian | eulerian: A package to find eulerian paths from graphs |

euroMix | Calculations for DNA Mixtures |

EurosarcBayes | Bayesian Single Arm Sample Size Calculation Software |

eurostat | Tools for Eurostat Open Data |

eva | Extreme Value Analysis with Goodness-of-Fit Testing |

EvalEst | Dynamic Systems Estimation - Extensions |

evaluate | Parsing and Evaluation Tools that Provide More Details than the Default |

Evapotranspiration | Modelling Actual, Potential and Reference Crop Evapotranspiration |

EvCombR | Evidence Combination in R |

evd | Functions for Extreme Value Distributions |

evdbayes | Bayesian Analysis in Extreme Value Theory |

eVenn | A Powerful Tool to Quickly Compare Huge Lists and Draw Venn Diagrams |

eventInterval | Sequential Event Interval Analysis |

events | Store and manipulate event data |

eventstudies | Event study and extreme event analysis |

evir | Extreme Values in R |

evmix | Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation |

evobiR | Comparative and Population Genetic Analyses |

evolqg | Tools for Evolutionary Quantitative Genetics |

evolvability | Calculation of Evolvability Parameters |

Evomorph | Evolutionary Morphometric Simulation |

EvoRAG | Evolutionary Rates Across Gradients |

evt0 | Mean of order p, peaks over random threshold Hill and high quantile estimates |

evtree | Evolutionary Learning of Globally Optimal Trees |

EW | Edgeworth Expansion |

EWGoF | Goodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions |

Exact | Unconditional Exact Test |

exact2x2 | Exact Conditional Tests and Confidence Intervals for 2x2 tables |

exactci | Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases |

ExactCIdiff | Inductive Confidence Intervals for the difference between two proportions |

exactLoglinTest | Monte Carlo Exact Tests for Log-linear models |

exactmeta | Exact fixed effect meta analysis |

ExactPath | Exact solution paths for regularized LASSO regressions with L_1 penalty |

exactRankTests | Exact Distributions for Rank and Permutation Tests |

exams | Automatic Generation of Exams in R |

ExceedanceTools | Confidence regions for exceedance sets and contour lines |

excel.link | Convenient Data Exchange with Microsoft Excel |

exCon | Interactive Exploration of Contour Data |

excursions | Excursion Sets and Contour Credibility Regions for Random Fields |

exif | Read EXIF Metadata from JPEGs |

exifr | EXIF Image Data in R |

ExomeDepth | Calls Copy Number Variants from Targeted Sequence Data |

expands | Expanding Ploidy and Allele-Frequency on Nested Subpopulations |

ExpDE | Modular Differential Evolution for Experimenting with Operators |

ExpDes | Experimental Designs package |

ExpDes.pt | Pacote Experimental Designs (Portuguese) |

expectreg | Expectile and Quantile Regression |

experiment | experiment: R package for designing and analyzing randomized experiments |

expert | Modeling without data using expert opinion |

ExplainPrediction | Explanation of Predictions for Classification and Regression Models |

explor | Interactive Interfaces for Results Exploration |

exploreR | Tools for Quickly Exploring Data |

expm | Matrix Exponential |

expoRkit | Expokit in R |

ExPosition | Exploratory analysis with the singular value decomposition |

expoTree | Calculate density dependent likelihood of a phylogenetic tree |

expp | Spatial analysis of extra-pair paternity |

expsmooth | Data Sets from "Forecasting with Exponential Smoothing" |

exptest | Tests for Exponentiality |

exreport | Fast, Reliable and Elegant Reproducible Research |

exsic | Convenience Functions for Botanists to Create Specimens Indices |

ExtDist | Extending the Range of Functions for Probability Distributions |

extfunnel | Additional Funnel Plot Augmentations |

extlasso | Maximum penalized likelihood estimation with extended lasso penalty |

extraBinomial | Extra-binomial approach for pooled sequencing data |

extracat | Categorical Data Analysis and Visualization |

extrafont | Tools for using fonts |

extrafontdb | Package for holding the database for the extrafont package |

extraTrees | Extremely Randomized Trees (ExtraTrees) Method for Classification and Regression |

ExtremeBounds | Extreme Bounds Analysis (EBA) |

extremefit | Estimation of Extreme Conditional Quantiles and Probabilities |

extRemes | Extreme Value Analysis |

extremeStat | Extreme Value Statistics and Quantile Estimation |

extremevalues | Univariate Outlier Detection |

extremogram | Estimation of Extreme Value Dependence for Time Series Data |

extWeibQuant | Estimate Lower Extreme Quantile with the Censored Weibull MLE and Censored Weibull Mixture |

eyelinker | Load Raw Data from Eyelink Eye Trackers |

eyetracking | Eyetracking Helper Functions |

eyetrackingR | Eye-Tracking Data Analysis |

ez | Easy Analysis and Visualization of Factorial Experiments |

ezec | Easy Interface to Effective Concentration Calculations |

ezglm | selects significant non-additive interaction between two variables using fast GLM implementation |

ezknitr | Avoid the Typical Working Directory Pain When Using 'knitr' |

ezsim | provide an easy to use framework to conduct simulation |

ezsummary | Summarise Data in the Quick and Easy Way |

face | Fast Covariance Estimation for Sparse Functional Data |

FacPad | Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment |

FactMixtAnalysis | Factor Mixture Analysis with covariates |

FACTMLE | Maximum Likelihood Factor Analysis |

FactoClass | Combination of Factorial Methods and Cluster Analysis |

factoextra | Extract and Visualize the Results of Multivariate Data Analyses |

FactoMineR | Multivariate Exploratory Data Analysis and Data Mining |

factorplot | factorplot |

factorQR | Bayesian quantile regression factor models |

Factoshiny | Perform Factorial Analysis from FactoMineR with a Shiny Application |

FACTscorer | Scores the FACT and FACIT Family of Patient-Reported Outcome Measures |

factualR | thin wrapper for the Factual.com server API |

FADA | Variable Selection for Supervised Classification in High Dimension |

FAdist | Distributions that are Sometimes Used in Hydrology |

Fahrmeir | Data from the Book "Multivariate Statistical Modelling Based on Generalized Linear Models", First Edition, by Ludwig Fahrmeir and Gerhard Tutz |

fail | File Abstraction Interface Layer (FAIL) |

FAiR | Factor Analysis in R |

faisalconjoint | Faisal Conjoint Model: A New Approach to Conjoint Analysis |

falcon | Finding Allele-Specific Copy Number in Next-Generation Sequencing Data |

falconx | Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data |

fame | Interface for FAME Time Series Database |

FamEvent | Simulation of Time-to-Event Family Data and Penetrance Estimation |

Familias | Probabilities for Pedigrees Given DNA Data |

FAMILY | A Convex Formulation for Modeling Interactions with Strong Heredity |

FAmle | Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions |

FAMT | Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data |

fanc | Penalized Likelihood Factor Analysis via Nonconvex Penalty |

fANCOVA | Nonparametric Analysis of Covariance |

fancycut | A Fancy Version of 'base::cut' |

fanovaGraph | Building Kriging Models from FANOVA Graphs |

fanplot | Visualisation of Sequential Probability Distributions Using Fan Charts |

FAOSTAT | Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations |

faoutlier | Influential Case Detection Methods for Factor Analysis and Structural Equation Models |

far | Modelization for Functional AutoRegressive Processes |

faraway | Functions and Datasets for Books by Julian Faraway |

fArma | ARMA Time Series Modelling |

farsi | Translate integers into persian |

fAsianOptions | EBM and Asian Option Valuation |

fAssets | Rmetrics - Analysing and Modelling Financial Assets |

fast | Implementation of the Fourier Amplitude Sensitivity Test (FAST) |

fastAdaboost | a Fast Implementation of Adaboost |

FastBandChol | Fast Estimation of a Covariance Matrix by Banding the Cholesky Factor |

fastclime | A Fast Solver for Parameterized LP Problems, Constrained L1 Minimization Approach to Sparse Precision Matrix Estimation and Dantzig Selector |

fastcluster | Fast Hierarchical Clustering Routines for R and Python |

fastcox | Lasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm |

fastdigest | Fast, Low Memory-Footprint Digests of R Objects |

fastGHQuad | Fast Rcpp implementation of Gauss-Hermite quadrature |

FastGP | Efficiently Using Gaussian Processes with Rcpp and RcppEigen |

fastGraph | Fast Drawing and Shading of Graphs of Statistical Distributions |

FastHCS | Robust Algorithm for Principal Component Analysis |

fastHICA | Hierarchical Independent Component Analysis: a Multi-Scale Sparse Non-Orthogonal Data-Driven Basis |

fastICA | FastICA Algorithms to perform ICA and Projection Pursuit |

FastImputation | Learn from Training Data then Quickly Fill in Missing Data |

FastKM | A Fast Multiple-Kernel Method Based on a Low-Rank Approximation |

FastKNN | Fast k-Nearest Neighbors |

fastM | Fast Computation of Multivariate M-estimators |

fastmatch | Fast match() function |

FastPCS | FastPCS Robust Fit of Multivariate Location and Scatter |

fastpseudo | Fast Pseudo Observations |

fastR | Foundations and Applications of Statistics Using R |

FastRCS | Fits the FastRCS Robust Multivariable Linear Regression Model |

FastRWeb | Fast Interactive Framework for Web Scripting Using R |

fastSOM | Fast Calculation of Spillover Measures |

fasttime | Fast Utility Function for Time Parsing and Conversion |

fat2Lpoly | Two-Locus Family-Based Association Test with Polytomic Outcome |

FatTailsR | Kiener Distributions and Fat Tails in Finance |

favnums | A Dataset of Favourite Numbers |

FAwR | Functions and Datasets for "Forest Analytics with R" |

fBasics | Rmetrics - Markets and Basic Statistics |

fbati | Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families |

FBFsearch | Algorithm for searching the space of Gaussian directed acyclic graphical models through moment fractional Bayes factors |

FBN | FISH Based Normalization and Copy Number inference of SNP microarray data |

fBonds | Bonds and Interest Rate Models |

fbRads | Analyzing and Managing Facebook Ads from R |

fbRanks | Association Football (Soccer) Ranking via Poisson Regression |

fbroc | Fast Algorithms to Bootstrap Receiver Operating Characteristics Curves |

fcd | Fused Community Detection |

fCertificates | Basics of Certificates and Structured Products Valuation |

FCGR | Fatigue Crack Growth in Reliability |

fclust | Fuzzy Clustering |

FCMapper | Fuzzy Cognitive Mapping |

FCNN4R | Fast Compressed Neural Networks for R |

fCopulae | Rmetrics - Bivariate Dependence Structures with Copulae |

fcros | A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations |

FD | Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology |

fda | Functional Data Analysis |

fdakma | Functional Data Analysis: K-Mean Alignment |

fdaMixed | Functional data analysis in a mixed model framework |

fdapace | Functional Data Analysis and Empirical Dynamics |

fdaPDE | Functional Data Analysis and Partial Differential Equations; Statistical Analysis of Functional and Spatial Data, Based on Regression with Partial Differential Regularizations |

fdasrvf | Elastic Functional Data Analysis |

fdatest | Interval Testing Procedure for Functional Data |

fda.usc | Functional Data Analysis and Utilities for Statistical Computing |

FDboost | Boosting Functional Regression Models |

FDGcopulas | Multivariate Dependence with FDG Copulas |

fdrci | Permutation-based FDR Point and Confidence Interval Estimation |

fdrDiscreteNull | False Discovery Rate Procedure Under Discrete Null Distributions |

FDRreg | False discovery rate regression |

FDRsampsize | Compute Sample Size that Meets Requirements for Average Power and FDR |

fdrtool | Estimation of (Local) False Discovery Rates and Higher Criticism |

fds | Functional data sets |

fdth | Frequency Distribution Tables, Histograms and Polygons |

FeaLect | Scores Features for Feature Selection |

feather | R Bindings to the Feather 'API' |

feature | Local Inferential Feature Significance for Multivariate Kernel Density Estimation |

FeatureHashing | Creates a Model Matrix via Feature Hashing with a Formula Interface |

features | Feature Extraction for Discretely-Sampled Functional Data |

fechner | Fechnerian Scaling of Discrete Object Sets |

FedData | Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources |

federalregister | Client Package for the U.S. Federal Register API |

FeedbackTS | Analysis of Feedback in Time Series |

FENmlm | Fixed Effects Nonlinear Maximum Likelihood Models |

fermicatsR | Fermi Large Area Telescope Catalogs |

fExoticOptions | Exotic Option Valuation |

fExpressCertificates | fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables |

fExtremes | Rmetrics - Extreme Financial Market Data |

ff | memory-efficient storage of large data on disk and fast access functions |

ffbase | Basic Statistical Functions for Package 'ff' |

FFD | Freedom from Disease |

FField | Force field simulation for a set of points |

ffmanova | Fifty-fifty MANOVA |

fftw | Fast FFT and DCT based on FFTW |

fftwtools | Wrapper for FFTW3: Includes 1-D, Univariate and Multivariate, and 2-D Transform |

fgac | Generalized Archimedean Copula |

FGalgorithm | Flury and Gautschi algorithms |

fGarch | Rmetrics - Autoregressive Conditional Heteroskedastic Modelling |

Fgmutils | Forest Growth Model Utilities |

FGN | Fractional Gaussian Noise and power law decay time series model fitting |

fgof | Fast Goodness-of-fit Test |

fgpt | Floating Grid Permutation Technique |

FGSG | Feature Grouping and Selection Over an Undirected Graph |

fgui | Function GUI |

fheatmap | Fantastic Heatmap |

FHtest | Tests for Right and Interval-Censored Survival Data Based on the Fleming-Harrington Class |

FI | Provide functions for forest inventory calculations |

FIACH | Retrospective Noise Control for fMRI |

fICA | Classical, Reloaded and Adaptive FastICA Algorithms |

fields | Tools for Spatial Data |

FieldSim | Random Fields (and Bridges) Simulations |

fifer | A collection of miscellaneous functions |

filehash | Simple Key-Value Database |

filehashSQLite | Simple key-value database using SQLite |

filematrix | File-Backed Matrix Class with Convenient Read and Write Access |

filenamer | Easy Management of File Names |

fImport | Rmetrics - Economic and Financial Data Import |

financial | Solving financial problems in R |

FinancialInstrument | Financial Instrument Model Infrastructure for R |

FinAsym | Classifies implicit trading activity from market quotes and computes the probability of informed trading |

FinCal | Time Value of Money, Time Series Analysis and Computational Finance |

FinCovRegularization | Covariance Matrix Estimation and Regularization for Finance |

FindAllRoots | Find all root(s) of the equation and Find root(s) of the equation by dichotomy |

FindIt | Finding Heterogeneous Treatment Effects |

FindMinIC | Find Models with Minimum IC |

findpython | Python tools to find an acceptable python binary |

fingerprint | Functions to operate on binary fingerprint data |

finiteruinprob | Computation of the probability of ruin within a finite time horizon |

finreportr | Financial Data from U.S. Securities and Exchange Commission |

FinTS | Companion to Tsay (2005) Analysis of Financial Time Series |

FisherEM | The Fisher-EM algorithm |

fisheyeR | Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R |

FisHiCal | Iterative FISH-based Calibration of Hi-C Data |

fishmethods | Fishery Science Methods and Models in R |

fishMod | Fits Poisson-sum-of-Gammas GLMs, Tweedie GLMs, and delta log-normal mdoels |

fishmove | Prediction of Fish Movement Parameters |

fit4NM | NONMEM platform |

FitAR | Subset AR Model Fitting |

FitARMA | FitARMA: Fit ARMA or ARIMA using fast MLE algorithm |

fitbitScraper | Scrapes Data from Fitbit |

fitcoach | Personalized Coach for Fitbit and R API |

fitdistrplus | Help to Fit of a Parametric Distribution to Non-Censored or Censored Data |

fitDRC | Fitting Density Ratio Classes |

fit.models | fit.models |

FITSio | FITS (Flexible Image Transport System) utilities |

fitTetra | fitTetra is an R package for assigning tetraploid genotype scores |

FKF | Fast Kalman Filter |

flacco | Feature-Based Landscape Analysis of Continuous and Constraint Optimization Problems |

flam | Fits Piecewise Constant Models with Data-Adaptive Knots |

flare | Family of Lasso Regression |

flashClust | Implementation of optimal hierarchical clustering |

flexclust | Flexible Cluster Algorithms |

flexCWM | Flexible Cluster-Weighted Modeling |

flexdashboard | R Markdown Format for Flexible Dashboards |

flexmix | Flexible Mixture Modeling |

FlexParamCurve | Tools to Fit Flexible Parametric Curves |

flexPM | Flexible Parametric Models for Censored and Truncated Data |

flexrsurv | Flexible Relative Survival |

flexsurv | Flexible Parametric Survival and Multi-State Models |

FLIM | Farewellâ€™s Linear Increments Model |

flip | Multivariate Permutation Tests |

FLLat | Fused Lasso Latent Feature Model |

flora | Tools for Interacting with the Brazilian Flora 2020 |

flowDiv | Cytometric Diversity Indices from 'FlowJo' Workspaces |

flower | Tools for characterizing flowering traits |

flowfield | Forecasts future values of a univariate time series |

flowr | Streamlining Design and Deployment of Complex Workflows |

flows | Flow Selection and Analysis |

FlowScreen | Daily Streamflow Trend and Change Point Screening |

FLR | Fuzzy Logic Rule Classifier |

flsa | Path algorithm for the general Fused Lasso Signal Approximator |

FLSSS | Multithreaded Fixed Size Subset Sum with Bounded Error in Multidimensional Real Domain |

Flury | Data Sets from Flury, 1997 |

flux | Flux rate calculation from dynamic closed chamber measurements |

fma | Data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (1998) |

FME | A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability, Monte Carlo Analysis |

FMP | Filtered Monotonic Polynomial IRT Models |

fmri | Analysis of fMRI experiments |

fmrs | Variable Selection in Finite Mixture of AFT Regression and FMR |

fmsb | Functions for Medical Statistics Book with some Demographic Data |

FMsmsnReg | Regression Models with Finite Mixtures of Skew Heavy-Tailed Errors |

FMStable | Finite Moment Stable Distributions |

fmt | Variance estimation of FMT method (Fully Moderated t-statistic) |

fMultivar | Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions |

FNN | Fast Nearest Neighbor Search Algorithms and Applications |

fNonlinear | Nonlinear and Chaotic Time Series Modelling |

foba | greedy variable selection |

fontcm | Computer Modern font for use with extrafont package |

foodweb | visualisation and analysis of food web networks |

fOptions | Rmetrics - Pricing and Evaluating Basic Options |

forams | Foraminifera and Community Ecology Analyses |

foreach | Provides Foreach Looping Construct for R |

ForeCA | Forecastable Component Analysis |

forecast | Forecasting Functions for Time Series and Linear Models |

ForecastCombinations | Forecast Combinations |

forecastHybrid | Convenient Functions for Ensemble Time Series Forecasts |

forecTheta | Forecasting Time Series by Theta Models |

forega | Floating-Point Genetic Algorithms with Statistical Forecast Based Inheritance Operator |

foreign | Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ... |

forensic | Statistical Methods in Forensic Genetics |

forensim | Statistical tools for the interpretation of forensic DNA mixtures |

forestFloor | Visualizes Random Forests with Feature Contributions |

forestmodel | Forest Plots from Regression Models |

forestplot | Advanced Forest Plot Using 'grid' Graphics |

ForImp | Imputation of Missing Values Through a Forward Imputation Algorithm |

ForIT | Functions from the 2nd Italian Forest Inventory (INFC) |

FormalSeries | Elementary arithemtic in formal series rings |

formatR | Format R Code Automatically |

formattable | Formattable Data Structures |

Formula | Extended Model Formulas |

formula.tools | Utilities for Formulas, Expressions, Calls and Other Objects |

fortunes | R Fortunes |

forward | Forward search |

ForwardSearch | Forward Search using asymptotic theory |

fossil | Palaeoecological and Palaeogeographical Analysis Tools |

fourierin | Computes Numeric Fourier Integrals |

fourPNO | Bayesian 4 Parameter Item Response Model |

FourScores | FourScores - A game for two players |

fpc | Flexible Procedures for Clustering |

fpca | Restricted MLE for Functional Principal Components Analysis |

fpCompare | Reliable Comparison of Floating Point Numbers |

FPDclustering | PD-Clustering and Factor PD-Clustering |

fPortfolio | Rmetrics - Portfolio Selection and Optimization |

fpow | Computing the noncentrality parameter of the noncentral F distribution |

fpp | Data for "Forecasting: principles and practice" |

fptdApprox | Approximation of First-Passage-Time Densities for Diffusion Processes |

fracdiff | Fractionally differenced ARIMA aka ARFIMA(p,d,q) models |

fracprolif | Fraction Proliferation via a Quiescent Growth Model |

fractal | Fractal Time Series Modeling and Analysis |

fractaldim | Estimation of fractal dimensions |

FractalParameterEstimation | Estimation of Parameters p and q for Randomized Sierpinski Carpet for [p-p-p-q]-Model |

fractalrock | Generate fractal time series with non-normal returns distribution |

FRACTION | Numeric number into fraction |

fractional | Vulgar Fractions in R |

Fragman | Fragment Analysis in R |

frailtyHL | Frailty Models via H-likelihood |

frailtypack | General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction |

frailtySurv | General Semiparametric Shared Frailty Model |

frair | Tools for Functional Response Analysis |

Frames2 | Estimation in Dual Frame Surveys |

franc | Detect the Language of Text |

FRAPO | Financial Risk Modelling and Portfolio Optimisation with R |

FRB | Fast and Robust Bootstrap |

frbs | Fuzzy Rule-Based Systems for Classification and Regression Tasks |

FRCC | Fast Regularized Canonical Correlation Analysis |

freeknotsplines | Free-Knot Splines |

FreeSortR | Free Sorting Data Analysis |

freestats | Statistical algorithms used in common data mining course |

FREGAT | Family REGional Association Tests |

fRegression | Rmetrics - Regression Based Decision and Prediction |

FREQ | FREQ: Estimate population size from capture frequencies |

freqdom | Frequency Domain Analysis for Multivariate Time Series |

freqMAP | Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate |

freqparcoord | Novel Methods for Parallel Coordinates |

FreqProf | Frequency Profiles Computing and Plotting |

freqweights | Working with Frequency Tables |

FRESA.CAD | Feature Selection Algorithms for Computer Aided Diagnosis |

FrF2 | Fractional Factorial designs with 2-level factors |

FrF2.catlg128 | Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words |

frm | Regression Analysis of Fractional Responses |

frmhet | Regression Analysis of Fractional Responses Under Unobserved Heterogeneity |

frmpd | Regression Analysis of Panel Fractional Responses |

frmqa | The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance |

fromo | Fast Robust Moments |

frontier | Stochastic Frontier Analysis |

frontiles | Partial Frontier Efficiency Analysis |

frt | Full Randomization Test |

FSA | Simple Fisheries Stock Assessment Methods |

FSAdata | Data to Support Fish Stock Assessment (FSA) Package |

fscaret | Automated Feature Selection from 'caret' |

FSelector | Selecting attributes |

fsia | Import and Analysis of OMR Data from FormScanner |

FSInteract | Fast Searches for Interactions |

fslr | Wrapper Functions for FSL (FMRIB Software Library) from Functional MRI of the Brain (FMRIB) |

fso | Fuzzy Set Ordination |

fSRM | Social Relations Analyses with Roles ("Family SRM") |

FTICRMS | Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data |

ftnonpar | Features and Strings for Nonparametric Regression |

fTrading | Technical Trading Analysis |

fts | R interface to tslib (a time series library in c++) |

ftsa | Functional Time Series Analysis |

ftsspec | Spectral Density Estimation and Comparison for Functional Time Series |

fueleconomy | EPA fuel economy data |

fugeR | FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic |

fullfact | Full Factorial Breeding Analysis |

fulltext | Full Text of 'Scholarly' Articles Across Many Data Sources |

fun | Use R for Fun |

FunChisq | Chi-Square and Exact Tests for Non-Parametric Functional Dependencies |

FunCluster | Functional Profiling of Microarray Expression Data |

Funclustering | A package for functional data clustering |

FuncMap | Hive Plots of R Package Function Calls |

functional | Curry, Compose, and other higher-order functions |

FunctionalNetworks | An algorithm for gene and gene set network inference |

functools | Functional Programming in R |

funcy | Functional Clustering Algorithms |

funFEM | Clustering in the Discriminative Functional Subspace |

fungible | Fungible Coefficients and Monte Carlo Functions |

funHDDC | Model-based clustering in group-specific functional subspaces |

fUnitRoots | Trends and Unit Roots |

funModeling | Learning Data Cleaning, Visual Analysis and Model Performance |

funr | Simple Utility Providing Terminal Access to all R Functions |

funreg | funreg (Functional Regression for Irregularly Timed Data) |

FUNTA | Functional Tangential Angle Pseudo-Depth |

funtimes | Functions for Time Series Analysis |

FusedPCA | Community Detection via Fused Principal Component Analysis |

futile.any | A Tiny Utility Providing Polymorphic Operations |

futile.logger | A Logging Utility for R |

futile.matrix | Random matrix generation and manipulation |

futile.options | Futile options management |

futile.paradigm | A framework for working in a functional programming paradigm in R |

future | A Future API for R |

futureheatwaves | Find, Characterize, and Explore Heat Waves in Climate Projections |

FuzzyAHP | (Fuzzy) AHP Calculation |

fuzzyFDR | Exact calculation of fuzzy decision rules for multiple testing |

fuzzyforest | Fuzzy Forests |

fuzzyjoin | Join Tables Together on Inexact Matching |

FuzzyLP | Fuzzy Linear Programming |

FuzzyNumbers | Tools to Deal with Fuzzy Numbers |

fuzzyRankTests | Fuzzy Rank Tests and Confidence Intervals |

FuzzyStatProb | Fuzzy Stationary Probabilities from a Sequence of Observations of an Unknown Markov Chain |

FuzzyToolkitUoN | Type 1 Fuzzy Logic Toolkit |

fwdmsa | Forward search for Mokken scale analysis |

FWDselect | Selecting Variables in Regression Models |

fwi.fbp | Fire Weather Index System and Fire Behaviour Prediction System Calculations |

fwsim | Fisher-Wright Population Simulation |

fxregime | Exchange Rate Regime Analysis |

G1DBN | A package performing Dynamic Bayesian Network inference |

G2Sd | Grain-Size Statistics and Description of Sediment |

GA | Genetic Algorithms |

GA4Stratification | A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling |

GAabbreviate | Abbreviating Items Measures using Genetic Algorithms |

GABi | Framework for Generalized Subspace Pattern Mining |

GAD | GAD: Analysis of variance from general principles |

GaDiFPT | First Passage Time Simulation for Gaussian Diffusion Processes |

gains | Gains Table Package |

GAIPE | Graphical Extension with Accuracy in Parameter Estimation (GAIPE) |

galts | Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation |

gam | Generalized Additive Models |

gamair | Data for "GAMs: An Introduction with R" |

gambin | Fit the GamBin Model to Species Abundance Distributions |

GAMBoost | Generalized linear and additive models by likelihood based boosting |

gamboostLSS | Boosting Methods for 'GAMLSS' |

gamboostMSM | Estimating multistate models using gamboost() |

gamclass | Functions and Data for a Course on Modern Regression and Classification |

GAMens | Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for Binary Classification |

games | Statistical Estimation of Game-Theoretic Models |

GameTheory | Cooperative Game Theory |

gamlr | Gamma Lasso Regression |

gamlss | Generalised Additive Models for Location Scale and Shape |

gamlss.add | Extra Additive Terms for GAMLSS Models |

gamlss.cens | Fitting an Interval Response Variable Using ‘gamlss.family’ Distributions |

gamlss.data | GAMLSS Data |

gamlss.demo | Demos for GAMLSS |

gamlss.dist | Distributions to be Used for GAMLSS Modelling |

gamlss.mx | Fitting Mixture Distributions with GAMLSS |

gamlss.nl | Fitting non linear parametric GAMLSS models |

gamlss.spatial | Spatial Terms in GAMLSS Models |

gamlss.tr | Generating and Fitting Truncated ‘gamlss.family’ Distributions |

gamlss.util | GAMLSS Utilities |

gamm4 | Generalized additive mixed models using mgcv and lme4 |

Gammareg | classic gamma regression: joint modeling of mean and shape parameters |

gammSlice | Generalized additive mixed model analysis via slice sampling |

gamsel | Fit Regularization Path for Generalized Additive Models |

GANPA | Gene Association Network-based Pathway Analysis |

GANPAdata | The GANPA Datasets Package |

gaoptim | Genetic Algorithm optimization for real-based and permutation-based problems |

gap | Genetic Analysis Package |

gapfill | Fill Missing Values in Satellite Data |

gapmap | Functions for Drawing Gapped Cluster Heatmap with ggplot2 |

gapminder | Data from Gapminder |

GAR | Authorize and Request Google Analytics Data |

gaselect | Genetic Algorithm (GA) for Variable Selection from High-Dimensional Data |

gaston | Genetic Data Manipulation (Quality Control, GRM and LD Computations, PCA), Linear Mixed Models (AIREML Algorithm), Association Testing |

gaussDiff | Difference measures for multivariate Gaussian probability density functions |

gaussquad | Collection of functions for Gaussian quadrature |

gazepath | Gazepath Transforms Eye-Tracking Data into Fixations and Saccades |

gb | Generalize Lambda Distribution and Generalized Bootstrapping |

GB2 | Generalized Beta Distribution of the Second Kind: Properties, Likelihood, Estimation |

gbm | Generalized Boosted Regression Models |

gbm2sas | Convert GBM Object Trees to SAS Code |

gbRd | Utilities for processing Rd objects and files |

gbutils | Simulation of Real and Complex Numbers and Small Programming Utilities |

GCAI.bias | Guided Correction Approach for Inherited bias (GCAI.bias) |

gCat | Graph-based two-sample tests for categorical data |

gcbd | GPU/CPU Benchmarking in Debian-based systems |

GCD | Global Charcoal Database |

gcdnet | LASSO and (adaptive) Elastic-Net penalized least squares, logistic regression, HHSVM and squared hinge loss SVM using a fast GCD algorithm |

gcerisk | Generalized Competing Event Model |

gclus | Clustering Graphics |

gcmr | Gaussian Copula Marginal Regression |

gconcord | Concord method for Graphical Model Selection |

gcookbook | Data for "R Graphics Cookbook" |

GCPM | Generalized Credit Portfolio Model |

GDAdata | Datasets for the Book Graphical Data Analysis with R |

gdalUtils | Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities |

gdata | Various R Programming Tools for Data Manipulation |

g.data | Delayed-Data Packages |

GDAtools | A toolbox for the analysis of categorical data in social sciences, and especially Geometric Data Analysis |

GDELTtools | Download, slice, and normalize GDELT data |

gdimap | Generalized Diffusion Magnetic Resonance Imaging |

gdistance | Distances and Routes on Geographical Grids |

gdm | Functions for Generalized Dissimilarity Modeling |

gds | Descriptive Statistics of Grouped Data |

gdtools | Utilities for Graphical Rendering |

gear | Geostatistical Analysis in R |

gee | Generalized Estimation Equation Solver |

geeM | Solve Generalized Estimating Equations |

geepack | Generalized Estimating Equation Package |

geesmv | Modified Variance Estimators for Generalized Estimating Equations |

geigen | Calculate Generalized Eigenvalues, the Generalized Schur Decomposition and the Generalized Singular Value Decomposition of a Matrix Pair with Lapack |

geiger | Analysis of Evolutionary Diversification |

gelnet | Generalized Elastic Nets |

gems | Generalized Multistate Simulation Model |

gemtc | Network Meta-Analysis Using Bayesian Methods |

gemtc.jar | GeMTC Java binary |

GenABEL | genome-wide SNP association analysis |

GenABEL.data | Package contains data which is used by GenABEL example and test functions |

genalg | R Based Genetic Algorithm |

genasis | Global ENvironmental ASsessment Information System (GENASIS) computational tools |

GenBinomApps | Clopper-Pearson Confidence Interval and Generalized Binomial Distribution |

GenCAT | Genetic Class Association Testing |

gencve | General Cross Validation Engine |

gendata | Generate and Modify Synthetic Datasets |

gender | Predict Gender from Names Using Historical Data |

genderizeR | Gender Prediction Based on First Names |

gendist | Generated Probability Distribution Models |

GENEAread | Package For Reading Binary files |

GeneCycle | Identification of Periodically Expressed Genes |

GeneF | Package for Generalized F-statistics |

GeneFeST | Bayesian calculation of gene-specific FST from genomic SNP data |

Geneland | Detection of structure from multilocus genetic data |

geneListPie | Profiling a gene list into GOslim or KEGG function pie |

genemodel | Gene Model Plotting in R |

GeneNet | Modeling and Inferring Gene Networks |

geneNetBP | Belief Propagation in Genotype-Phenotype Networks |

genepi | Genetic Epidemiology Design and Inference |

generalCorr | Generalized Correlations and Initial Causal Path |

GeneralizedHyperbolic | The Generalized Hyperbolic Distribution |

GeneralOaxaca | Blinder-Oaxaca Decomposition for Generalized Linear Model |

generator | Generate Data Containing Fake Personally Identifiable Information |

GeneReg | Construct time delay gene regulatory network |

geneSignatureFinder | A Gene-signatures finder tools |

geneSLOPE | Genome-Wide Association Study with SLOPE |

genetics | Population Genetics |

GeneticSubsetter | Identify Favorable Subsets of Germplasm Collections |

GeneticTools | Collection of Genetic Data Analysis Tools |

GeNetIt | Spatial Graph-Theoretic Genetic Gravity Modelling |

GenForImp | The Forward Imputation: A Sequential Distance-Based Approach for Imputing Missing Data |

genie | A New, Fast, and Outlier Resistant Hierarchical Clustering Algorithm |

GenKern | Functions for generating and manipulating binned kernel density estimates |

genlasso | Path algorithm for generalized lasso problems |

GENLIB | Genealogical Data Analysis |

genMOSS | Functions for the Bayesian Analysis of GWAS Data |

genMOSSplus | Application of MOSS algorithm to genome-wide association study (GWAS) |

genomeplot | 'Plot genome wide values for all chromosomes' |

genoPlotR | Plot Publication-Grade Gene and Genome Maps |

GenOrd | Simulation of Discrete Random Variables with Given Correlation Matrix and Marginal Distributions |

genpathmox | Generalized PATHMOX Algorithm for PLS-PM, LS and LAD Regression |

genridge | Generalized Ridge Trace Plots for Ridge Regression |

GenSA | R Functions for Generalized Simulated Annealing |

gensemble | generalized ensemble methods |

gensphere | Generalized Spherical Distributions |

genSurv | Generating Multi-State Survival Data |

GenWin | Spline Based Window Boundaries for Genomic Analyses |

geo | Draw and Annotate Maps, Especially Charts of the North Atlantic |

geoaxe | Split 'Geospatial' Objects into Pieces |

geoBayes | Analysis of Geostatistical Data using Bayes and Empirical Bayes Methods |

GeoBoxplot | Geographic Box Plot |

geocodeHERE | Wrapper for Nokia's HERE Geocoding API |

geoCount | Analysis and Modeling for Geostatistical Count Data |

GeoDE | A geometrical Approach to Differential expression and gene-set enrichment |

geoelectrics | 3D-Visualization of Geoelectric Resistivity Measurement Profiles |

geofd | Spatial Prediction for Function Value Data |

GeoGenetix | Quantification of the effect of geographic versus environmental isolation on genetic differentiation |

geohash | Tools for Geohash Creation and Manipulation |

geojsonio | Convert Data from and to 'geoJSON' or 'topoJSON' |

geoknife | Web-Processing of Large Gridded Datasets |

GeoLight | Analysis of Light Based Geolocator Data |

GEOmap | Topographic and Geologic Mapping |

geomapdata | Data for topographic and Geologic Mapping |

geometry | Mesh Generation and Surface Tesselation |

geomnet | Network Visualization in the 'ggplot2' Framework |

geomorph | Geometric Morphometric Analyses of 2D/3D Landmark Data |

geonames | Interface to www.geonames.org web service |

geophys | Geophysics, Continuum Mechanics, Mogi Models, Gravity |

geoR | Analysis of Geostatistical Data |

geoRglm | A Package for Generalised Linear Spatial Models |

georob | Robust Geostatistical Analysis of Spatial Data |

geoscale | Geological Time Scale Plotting |

geospacom | Facilitate Generating of Distance Matrices Used in Package 'spacom' and Plotting Data on Maps |

geosphere | Spherical Trigonometry |

geospt | Geostatistical Analysis and Design of Optimal Spatial Sampling Networks |

geosptdb | Spatio-Temporal; Inverse Distance Weighting and Radial Basis Functions with Distance-Based Regression |

geostatsp | Geostatistical Modelling with Likelihood and Bayes |

geotech | Geotechnical Engineering |

geotools | Geo tools |

geotopbricks | An R Plug-in for the Distributed Hydrological Model GEOtop |

GeoXp | Interactive exploratory spatial data analysis |

geozoo | Zoo of Geometric Objects |

gepaf | Google Encoded Polyline Algorithm Format |

GERGM | Estimation and Fit Diagnostics for Generalized Exponential Random Graph Models |

gesca | Generalized Structured Component Analysis (GSCA) |

gesis | R Client for GESIS Data Catalogue (DBK) |

GESTr | Gene Expression State Transformation |

getMet | Get Meteorological Data for Hydrologic Models |

getopt | C-like getopt behavior |

GetoptLong | Parsing Command-Line Arguments and Variable Interpolation |

getPass | Masked User Input |

GetR | GetR: Calculate Guttman error trees in R |

gets | General-to-Specific (GETS) Modelling and Indicator Saturation Methods |

GetTDData | Get Data for Brazilian Bonds (Tesouro Direto) |

gettingtothebottom | Learning Optimization and Machine Learning for Statistics |

GEVcdn | GEV Conditional Density Estimation Network |

GEVStableGarch | ARMA-GARCH/APARCH Models with GEV and Stable Distributions |

GExMap | A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data |

gfcanalysis | Tools for Working with Hansen et al. Global Forest Change Dataset |

GFD | Tests for General Factorial Designs |

GGally | Extension to ggplot2 |

ggalt | Extra Coordinate Systems, Geoms and Statistical Transformations for 'ggplot2' |

ggbeeswarm | Categorical Scatter (Violin Point) Plots |

ggcorrplot | Visualization of a Correlation Matrix using 'ggplot2' |

ggdendro | Create Dendrograms and Tree Diagrams Using 'ggplot2' |

gge | Genotype Plus Genotype-by-Environment Biplots |

GGEBiplotGUI | Interactive GGE Biplots in R |

ggenealogy | Visualization Tools for Genealogical Data |

ggExtra | Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements |

GGIR | Raw Accelerometer Data Analysis |

ggiraph | Make 'ggplot2' Graphics Interactive Using 'htmlwidgets' |

gglasso | Group Lasso Penalized Learning Using A Unified BMD Algorithm |

ggm | Functions for graphical Markov models |

ggmap | Spatial Visualization with ggplot2 |

ggmcmc | Tools for Analyzing MCMC Simulations from Bayesian Inference |

GGMridge | Gaussian Graphical Models Using Ridge Penalty Followed by Thresholding and Reestimation |

GGMselect | Gaussian Graphs Models Selection |

ggnetwork | Geometries to Plot Networks with 'ggplot2' |

ggparallel | Variations of Parallel Coordinate Plots for Categorical Data |

ggplot2 | An Implementation of the Grammar of Graphics |

ggplot2movies | Movies Data |

ggpmisc | Miscellaneous Extensions to 'ggplot2' |

ggRandomForests | Visually Exploring Random Forests |

ggraptR | Allows Interactive Visualization of Data Through a Web Browser GUI |

ggrepel | Repulsive Text and Label Geoms for 'ggplot2' |

ggROC | package for roc curve plot with ggplot2 |

ggsci | Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2' |

ggseas | 'stats' for Seasonal Adjustment on the Fly with 'ggplot2' |

ggsn | North Symbols and Scale Bars for Maps Created with 'ggplot2' or 'ggmap' |

ggspectra | Extensions to 'ggplot2' for Radiation Spectra |

ggswissmaps | Offers Various Swiss Maps as ggplot2 Objects |

ggtern | An Extension to 'ggplot2', for the Creation of Ternary Diagrams |

ggThemeAssist | Add-in to Customize 'ggplot2' Themes |

ggthemes | Extra Themes, Scales and Geoms for 'ggplot2' |

ggvis | Interactive Grammar of Graphics |

GHap | Genome-Wide Haplotyping |

ghit | Lightweight GitHub Package Installer |

GHQp | Gauss Hermite Quadrature with pruning |

ghyp | A package on the generalized hyperbolic distribution and its special cases |

GiANT | Gene Set Uncertainty in Enrichment Analysis |

GibbsACOV | Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models |

gibbs.met | Naive Gibbs Sampling with Metropolis Steps |

GIGrvg | Random Variate Generator for the GIG Distribution |

GillespieSSA | Gillespie's Stochastic Simulation Algorithm (SSA) |

gimme | Group Iterative Multiple Model Estimation |

gimms | Download and Process GIMMS NDVI3g Data |

GiNA | High Throughput Phenotyping |

GiniWegNeg | Computing the Gini-Based Coefficients for Weighted and Negative Attributes |

gIPFrm | Generalized Iterative Proportional Fitting for Relational Models |

GiRaF | Gibbs Random Fields Analysis |

giRaph | The giRaph package for graph representation in R |

GISTools | Some further GIS capabilities for R |

gistr | Work with 'GitHub' 'Gists' |

git2r | Provides Access to Git Repositories |

gitlabr | Access to the Gitlab API |

gitter | Quantification of Pinned Microbial Cultures |

Giza | Constructing panels of population pyramid plots based on lattice |

gjam | Generalized Joint Attribute Modeling |

gkmSVM | Gapped-Kmer Support Vector Machine |

glamlasso | Lasso Penalization in Large Scale Generalized Linear Array Models |

glarma | Generalized Linear Autoregressive Moving Average Models |

glasso | Graphical lasso- estimation of Gaussian graphical models |

glba | General Linear Ballistic Accumulator Models |

glcm | Calculate Textures from Grey-Level Co-Occurrence Matrices (GLCMs) |

gld | Estimation and Use of the Generalised (Tukey) Lambda Distribution |

GLDEX | Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods |

gldist | An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution |

GLDreg | Fit GLD Regression Model and GLD Quantile Regression Model to Empirical Data |

glinternet | Learning Interactions via Hierarchical Group-Lasso Regularization |

gllm | Generalised log-linear model |

glm2 | Fitting Generalized Linear Models |

glmbb | All Hierarchical or Graphical Models for Generalized Linear Model |

glmc | Fitting Generalized Linear Models Subject to Constraints |

glm.ddR | Distributed 'glm' for Big Data using 'ddR' API |

glmdm | R Code for Simulation of GLMDM |

glmgraph | Graph-Constrained Regularization for Sparse Generalized Linear Models |

glmlep | Fit GLM with LEP-based penalized maximum likelihood |

glmm | Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation |

glmmBUGS | Generalised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS |

glmmGS | Gauss-Seidel Generalized Linear Mixed Model solver |

glmmLasso | Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation |

glmmML | Generalized linear models with clustering |

GLMMRR | Generalized Linear Mixed Model (GLMM) for Binary Randomized Response Data |

glmmsr | Fit a Generalized Linear Mixed Model |

glmnet | Lasso and Elastic-Net Regularized Generalized Linear Models |

glmnetcr | Fit a penalized constrained continuation ratio model for predicting an ordinal response |

glmpath | L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model |

glmpathcr | Fit a penalized continuation ratio model for predicting an ordinal response |

glmulti | Model selection and multimodel inference made easy |

glmvsd | Variable Selection Deviation Measures and Instability Tests for High-Dimensional Generalized Linear Models |

glmx | Generalized Linear Models Extended |

globalboosttest | Testing the additional predictive value of high-dimensional data |

GlobalDeviance | Global Deviance Permutation Tests |

GlobalFit | Bi-Level Optimization of Metabolic Network Models |

globalGSA | Global Gene-Set Analysis for Association Studies |

GlobalOptions | Generate Functions to Get or Set Global Options |

globalOptTests | Objective functions for benchmarking the performance of global optimization algorithms |

globals | Identify Global Objects in R Expressions |

globe | Plot 2D and 3D Views of the Earth, Including Major Coastline |

glogis | Fitting and Testing Generalized Logistic Distributions |

glpkAPI | R Interface to C API of GLPK |

glrt | Generalized Logrank Tests for Interval-censored Failure Time Data |

GLSME | Generalized Least Squares with Measurement Error |

glycanr | Tools for Analysing N-Glycan Data |

gmailr | Access the Gmail RESTful API |

gmapsdistance | Distance and Travel Time Between Two Points from Google Maps |

gmatrix | GPU Computing in R |

GMCM | Fast Estimation of Gaussian Mixture Copula Models |

gMCP | Graph Based Multiple Comparison Procedures |

GMD | Generalized Minimum Distance of distributions |

GMDH | Short Term Forecasting via GMDH-Type Neural Network Algorithms |

Gmedian | Geometric Median, k-Median Clustering and Robust Median PCA |

gmeta | Meta-Analysis via a Unified Framework of Confidence Distribution |

Gmisc | Descriptive Statistics, Transition Plots, and More |

gmm | Generalized Method of Moments and Generalized Empirical Likelihood |

GMMBoost | Likelihood-based Boosting for Generalized mixed models |

gmnl | Multinomial Logit Models with Random Parameters |

gmodels | Various R Programming Tools for Model Fitting |

gmp | Multiple Precision Arithmetic |

gmt | Interface between GMT Map-Making Software and R |

gmum.r | GMUM Machine Learning Group Package |

gmwm | Generalized Method of Wavelet Moments |

gMWT | Generalized Mann-Whitney Type Tests |

GNE | Computation of Generalized Nash Equilibria |

gnm | Generalized Nonlinear Models |

gnmf | Generalized Non-negative Matrix Factorization Based on Renyi Divergence |

gnumeric | Read Data from Files Readable by Gnumeric |

goalprog | Weighted and lexicographical goal programming and optimization |

gof | Model-diagnostics based on cumulative residuals |

gofCopula | Goodness-of-Fit Tests for Copulae |

GoFKernel | Testing Goodness-of-Fit with the Kernel Density Estimator |

GofKmt | Khmaladze Martingale Transformation Goodness-of-Fit Test |

goft | Tests of Fit for some Probability Distributions |

goftest | Classical Goodness-of-Fit Tests for Univariate Distributions |

GOGANPA | GO-Functional-Network-based Gene-Set-Analysis |

gogarch | Generalized Orthogonal GARCH (GO-GARCH) models |

GoodmanKruskal | Association Analysis for Categorical Variables |

googleAnalyticsR | Google Analytics API into R |

googleAuthR | Easy Authentication with Google OAuth2 API |

googleformr | Collect Data Programmatically by POST Methods to Google Forms |

googlePublicData | Working with Google Public Data Explorer DSPL Metadata Files |

googlesheets | Manage Google Spreadsheets from R |

googleVis | R Interface to Google Charts |

GOplot | Visualization of Functional Analysis Data |

GORCure | Fit Generalized Odds Rate Mixture Cure Model with Interval Censored Data |

goric | Generalized Order-Restricted Information Criterion |

govStatJPN | functions to get public survey data in Japan |

gpairs | gpairs: The Generalized Pairs Plot |

GPareto | Gaussian Processes for Pareto Front Estimation and Optimization |

GPArotation | GPA Factor Rotation |

GPC | Generalized Polynomial Chaos |

gPCA | Batch Effect Detection via Guided Principal Components Analysis |

gpclib | General Polygon Clipping Library for R |

GPCSIV | GPCSIV, Generalized Principal Component of Symbolic Interval variables |

gpDDE | General Profiling Method for Delay Differential Equation |

gPdtest | Bootstrap goodness-of-fit test for the generalized Pareto distribution |

GPFDA | Apply Gaussian Process in Functional data analysis |

GPfit | Gaussian Processes Modeling |

gpk | 100 Data Sets for Statistics Education |

gplm | Generalized partial linear models (GPLM) |

gplots | Various R Programming Tools for Plotting Data |

GPLTR | Generalized Partially Linear Tree-Based Regression Model |

gpmap | Analysing and plotting genotype-phenotype maps |

gpr | A Minimalistic package to apply Gaussian Process in R |

gProfileR | Interface to the 'g:Profiler' Toolkit |

GPseq | gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments |

gptk | Gaussian Processes Tool-Kit |

gpuR | GPU Functions for R Objects |

gputools | A Few GPU Enabled Functions |

GPvam | Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling |

gquad | G Quadruplex Motif Prediction Tool |

Grace | Graph-Constrained Estimation and Hypothesis Tests |

grade | Binary Grading functions for R |

GRaF | Species distribution modelling using latent Gaussian random fields |

gRain | Graphical Independence Networks |

gramEvol | Grammatical Evolution for R |

GrammR | Graphical Representation and Modeling of Metagenomic Reads |

GRANBase | Creating Continuously Integrated Package Repositories from Manifests |

granova | Graphical Analysis of Variance |

granovaGG | Graphical Analysis of Variance Using ggplot2 |

gRapfa | Acyclic Probabilistic Finite Automata |

gRapHD | Efficient selection of undirected graphical models for high-dimensional datasets |

GrapheR | A Multi-Platform GUI for Drawing Customizable Graphs in R |

graphicalVAR | Graphical VAR for Experience Sampling Data |

graphicsQC | Quality Control for Graphics in R |

graphscan | Cluster Detection with Hypothesis Free Scan Statistic |

graphTweets | Visualise Twitter Interactions |

GrassmannOptim | Grassmann Manifold Optimization |

graticule | Meridional and Parallel Lines for Maps |

gRbase | A Package for Graphical Modelling in R |

gRc | Inference in Graphical Gaussian Models with Edge and Vertex Symmetries |

Greg | Regression Helper Functions |

greport | Graphical Reporting for Clinical Trials |

greyzoneSurv | Fit a Grey-Zone Model with Survival Data |

Grid2Polygons | Convert Spatial Grids to Polygons |

gridBase | Integration of base and grid graphics |

gridDebug | Debugging 'grid' Graphics |

gridExtra | Miscellaneous Functions for "Grid" Graphics |

gridGraphics | Redraw Base Graphics Using 'grid' Graphics |

gridGraphviz | Drawing Graphs with 'grid' |

gridSVG | Export 'grid' Graphics as SVG |

GriegSmith | Uses Grieg-Smith method on 2 dimentional spatial data |

gRim | Graphical Interaction Models |

grImport | Importing Vector Graphics |

grnn | General regression neural network |

groc | Generalized Regression on Orthogonal Components |

grofit | The package was developed to fit fit many growth curves obtained under different conditions |

gromovlab | Gromov-Hausdorff Type Distances for Labeled Metric Spaces |

grouped | Regression Analysis of Grouped and Coarse Data |

groupRemMap | Regularized Multivariate Regression for Identifying Master Predictors Using the GroupRemMap Penalty |

GroupSeq | A GUI-Based Program to Compute Probabilities Regarding Group Sequential Designs |

GroupTest | Multiple Testing Procedure for Grouped Hypotheses |

growcurves | Bayesian Semi and Nonparametric Growth Curve Models that Additionally Include Multiple Membership Random Effects |

growfunctions | Bayesian Non-Parametric Dependent Models for Time-Indexed Functional Data |

growthcurver | Simple Metrics to Summarize Growth Curves |

growthmodels | Nonlinear Growth Models |

growthrate | Bayesian reconstruction of growth velocity |

growthrates | Estimate Growth Rates from Experimental Data |

grplasso | Fitting user specified models with Group Lasso penalty |

grppenalty | Concave 1-norm and 2-norm group penalty in linear and logistic regression |

grpreg | Regularization Paths for Regression Models with Grouped Covariates |

grpregOverlap | Penalized Regression Models with Overlapping Grouped Covariates |

grpSLOPE | Group Sorted L1 Penalized Estimation |

grpss | Group Screening and Selection |

grr | Alternative Implementations of Base R Functions |

grt | General Recognition Theory |

GRTo | Tools for the Analysis of Gutenberg-Richter Distributions of Earthquake Magnitudes |

GSA | Gene set analysis |

GSAgm | Gene Set Analysis using the Gamma Method |

gsalib | Utility Functions For GATK |

gsarima | Two functions for Generalized SARIMA time series simulation |

gsbDesign | Group Sequential Bayes Design |

gsDesign | Group Sequential Design |

GSE | Robust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data |

gsEasy | Gene Set Enrichment Analysis in R |

gSeg | Graph-Based Change-Point Detection (g-Segmentation) |

gSEM | Semi-Supervised Generalized Structural Equation Modeling |

gset | Group Sequential Design in Equivalence Studies |

gsg | Calculation of selection coefficients |

gsheet | Download Google Sheets Using Just the URL |

GSIF | Global Soil Information Facilities |

gskat | GEE_KM |

gsl | wrapper for the Gnu Scientific Library |

GSM | Gamma Shape Mixture |

gsmoothr | Smoothing tools |

GSODR | Download, Clean and Generate New Variables from GSOD Data |

gss | General Smoothing Splines |

gsscopu | Copula Density and 2-D Hazard Estimation using Smoothing Splines |

GSSE | Genotype-Specific Survival Estimation |

gstat | Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation |

gsubfn | Utilities for strings and function arguments |

gsw | Gibbs Sea Water Functions |

GsymPoint | Estimation of the Generalized Symmetry Point, an Optimal Cutpoint in Continuous Diagnostic Tests |

gtable | Arrange 'Grobs' in Tables |

gtcorr | Calculate efficiencies of group testing algorithms with correlated responses |

gte | Generalized Turnbull's Estimator |

gtools | Various R Programming Tools |

gtop | Game-Theoretically OPtimal (GTOP) Reconciliation Method |

gtrendsR | R Functions to Perform and Display Google Trends Queries |

gtx | Genetics ToolboX |

GuardianR | The Guardian API Wrapper |

Guerry | Maps, data and methods related to Guerry (1833) "Moral Statistics of France" |

guess | Adjust Estimates of Learning for Guessing |

GUIDE | GUI for DErivatives in R |

GUILDS | Implementation of Sampling Formulas for the Unified Neutral Model of Biodiversity and Biogeography, with or without Guild Structure |

GUIProfiler | Graphical User Interface for Rprof() |

gumbel | The Gumbel-Hougaard Copula |

GUniFrac | Generalized UniFrac distances |

gunsales | Statistical Analysis of Monthly Background Checks of Gun Purchases |

gutenbergr | Download and Process Public Domain Works from Project Gutenberg |

GUTS | Fast Calculation of the Likelihood of a Stochastic Survival Model |

gvc | Global Value Chains Tools |

gvcm.cat | Regularized Categorical Effects/Categorical Effect Modifiers/Continuous/Smooth Effects in GLMs |

gvlma | Global Validation of Linear Models Assumptions |

GWAF | Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data |

GWASExactHW | Exact Hardy-Weinburg testing for Genome Wide Association Studies |

gwerAM | Controlling the genome-wide type I error rate in association mapping experiments |

GWG | Calculation of probabilities for inadequate and excessive gestational weight gain |

gWidgets | gWidgets API for building toolkit-independent, interactive GUIs |

gWidgets2 | Rewrite of gWidgets API for Simplified GUI Construction |

gWidgetsRGtk2 | Toolkit implementation of gWidgets for RGtk2 |

gWidgetstcltk | Toolkit implementation of gWidgets for tcltk package |

GWLelast | Geographically Weighted Logistic Elastic Net Regression |

GWmodel | Geographically-Weighted Models |

GWRM | Generalized Waring Regression Model for Count Data |

gwrr | Fits geographically weighted regression models with diagnostic tools |

GWsignif | Genome-wide significance for whole genome sequencing studies |

GxM | Maximum Likelihood Estimation for Gene-by-Measured Environment Interaction Models |

gyriq | Kinship-Adjusted Survival SNP-Set Analysis |

h2o | R Interface for H2O |

h5 | Interface to the 'HDF5' Library |

haarfisz | Software to perform Haar Fisz transforms |

HAC | Estimation, Simulation and Visualization of Hierarchical Archimedean Copulae (HAC) |

HadoopStreaming | Utilities for using R scripts in Hadoop streaming |

hail | Read HYDRA Rainfall Data |

hamlet | Hierarchical Optimal Matching and Machine Learning Toolbox |

HandTill2001 | Multiple Class Area under ROC Curve |

Hankel | Univariate non-parametric two-sample test based on empirical Hankel transforms |

hapassoc | Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm |

HapEstXXR | Multi-Locus Stepwise Regression |

HAPim | HapIM |

Haplin | Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes |

haplo.ccs | Estimate Haplotype Relative Risks in Case-Control Data |

HaploSim | Functions to simulate haplotypes |

haplo.stats | Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous |

haplotyper | Tool for Clustering Genotypes in Haplotypes |

haplotypes | Haplotype Inference and Statistical Analysis of Genetic Variation |

HAP.ROR | Recursive Organizer (ROR) |

HardyWeinberg | Statistical Tests and Graphics for Hardy-Weinberg Equilibrium |

HarmonicRegression | Harmonic Regression to One or more Time Series |

harvestr | A Parallel Simulation Framework |

Harvest.Tree | Harvest the Classification Tree |

hash | Full feature implementation of hash/associated arrays/dictionaries |

hashFunction | A collection of non-cryptographic hash functions |

hashids | Generate Short Unique YouTube-Like IDs (Hashes) from Integers |

hashmap | The Faster Hash Map |

hashr | Hash R Objects to Integers Fast |

hasseDiagram | Drawing Hasse diagram |

haven | Import SPSS, Stata and SAS Files |

hawkes | Hawkes process simulation and calibration toolkit |

hazus | Damage functions from FEMA's HAZUS software for use in modeling financial losses from natural disasters |

hBayesDM | Hierarchical Bayesian Modeling of Decision-Making Tasks |

HBglm | Hierarchical Bayesian Regression for GLMs |

hbim | Hill/Bliss Independence Model for Combination Vaccines |

hbm | Hierarchical Block Matrix Analysis |

hbmem | Hierarchical Bayesian Analysis of Recognition Memory |

hbsae | Hierarchical Bayesian Small Area Estimation |

HBSTM | Hierarchical Bayesian Space-Time models for Gaussian space-time data |

hcc | Hidden correlation check |

hcci | Interval estimation for the parameters of linear models with heteroskedasticity (Wild Bootstrap) |

hcp | Change Point Estimation for Regression with Heteroscedastic Data |

hda | Heteroscedastic Discriminant Analysis |

HDclassif | High Dimensional Supervised Classification and Clustering |

hddplot | Use known groups in high-dimensional data to derive scores for plots |

hddtools | Hydrological Data Discovery Tools |

hdeco | Hierarchical DECOmposition of Entropy for Categorical Map Comparisons |

HDGLM | Tests for High Dimensional Generalized Linear Models |

hdi | High-Dimensional Inference |

HDInterval | Highest (Posterior) Density Intervals |

hdlm | Fitting High Dimensional Linear Models |

hdm | High-Dimensional Metrics |

HDMD | Statistical Analysis Tools for High Dimension Molecular Data (HDMD) |

hdnom | Nomograms for High-Dimensional Cox Models |

HDPenReg | High-Dimensional Penalized Regression |

hdr | Interface to the UNDR Human Development Report API |

hdrcde | Highest density regions and conditional density estimation |

HDtweedie | The Lasso for the Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm |

HEAT | Health Effects of Air Pollution and Temperature (HEAT) |

heatex | Heat exchange calculations during physical activity |

heatmap3 | An Improved Heatmap Package |

heatmapFit | Fit statistic for binary dependent variable models |

heatmap.plus | Heatmap with more sensible behavior |

heavy | Robust Estimation Using Heavy-Tailed Distributions |

heemod | Models for Health Economic Evaluation |

hellno | Providing 'stringsAsFactors=FALSE' Variants of 'data.frame()' and 'as.data.frame()' |

helloJavaWorld | Hello Java World |

HelpersMG | Tools for Earth Meteorological Analysis |

helsinki | R Tools for Helsinki Open Data |

heplots | Visualizing Hypothesis Tests in Multivariate Linear Models |

hergm | Hierarchical Exponential-Family Random Graph Models |

heritability | Marker-Based Estimation of Heritability Using Individual Plant or Plot Data |

hermite | Generalized Hermite Distribution |

hetmeta | Heterogeneity Measures in Meta-Analysis |

hett | Heteroscedastic t-regression |

het.test | White's Test for Heteroskedasticity |

hexbin | Hexagonal Binning Routines |

hextri | Hexbin Plots with Triangles |

hexView | Viewing Binary Files |

hflights | Flights that departed Houston in 2011 |

hgam | High-dimensional Additive Modelling |

hglasso | Learning graphical models with hubs |

hglm | Hierarchical Generalized Linear Models |

hglm.data | Data for The hglm Package |

hgm | Holonomic Gradient Method and Gradient Descent |

HGNChelper | Handy Functions for Working With HGNC Gene Symbols and Affymetrix Probeset Identifiers |

HH | Statistical Analysis and Data Display: Heiberger and Holland |

HHG | Heller-Heller-Gorfine Tests of Independence and Equality of Distributions |

hht | The Hilbert-Huang Transform: Tools and Methods |

HI | Simulation from distributions supported by nested hyperplanes |

HiCfeat | Multiple Logistic Regression for 3D Chromatin Domain Border Analysis |

HiClimR | Hierarchical Climate Regionalization |

HiCseg | Detection of domains in HiC data |

hiddenf | The All-Configurations, Maximum-Interaction F-Test for Hidden Additivity |

HiddenMarkov | Hidden Markov Models |

HiDimDA | High Dimensional Discriminant Analysis |

HiDimMaxStable | Inference on High Dimensional Max-Stable Distributions |

hierarchicalDS | Functions For Performing Hierarchical Analysis of Distance Sampling Data |

hierarchicalSets | Set Data Visualization Using Hierarchies |

hierband | Convex Banding of the Covariance Matrix |

hierDiversity | Hierarchical Multiplicative Partitioning of Complex Phenotypes |

hierfstat | Estimation and Tests of Hierarchical F-Statistics |

hierNet | A Lasso for Hierarchical Interactions |

HierO | A graphical user interface for calculating power and sample size for hierarchical data |

hier.part | Hierarchical Partitioning |

hiertest | Convex Hierarchical Testing of Interactions |

HIest | Hybrid index estimation |

highcharter | A Wrapper for the 'Highcharts' Library |

highD2pop | Two-Sample Tests for Equality of Means in High Dimension |

HighDimOut | Outlier Detection Algorithms for High-Dimensional Data |

highfrequency | Tools For Highfrequency Data Analysis |

highlight | Syntax Highlighter |

highmean | Two-Sample Tests for High-Dimensional Mean Vectors |

highr | Syntax Highlighting for R Source Code |

highriskzone | Determining and Evaluating High-Risk Zones |

highSCREEN | High Throughput Screening for Plate Based Essays |

highTtest | Simultaneous Critical Values for t-Tests in Very High Dimensions |

hillmakeR | Perform occupancy analysis |

HiLMM | Estimation of Heritability in Linear Mixed Models |

hindexcalculator | H-Index Calculator using Data from a Web of Science (WoS) Citation Report |

hint | Tools for hypothesis testing based on Hypergeometric Intersection distributions |

HiPLARM | High Performance Linear Algebra in R |

hiPOD | hierarchical Pooled Optimal Design |

hisemi | Hierarchical Semiparametric Regression of Test Statistics |

hisse | Hidden State Speciation and Extinction |

HistData | Data Sets from the History of Statistics and Data Visualization |

HistDAWass | Histogram-Valued Data Analysis |

histmdl | A Most Informative Histogram-Like Model |

histogram | Construction of regular and irregular histograms with different options for automatic choice of bins |

HistogramTools | Utility Functions for R Histograms |

historydata | Data Sets for Historians |

hit | Hierarchical Inference Testing |

hitandrun | "Hit and Run" and "Shake and Bake" for Sampling Uniformly from Convex Shapes |

hive | Hadoop InteractiVE |

HiveR | 2D and 3D Hive Plots for R |

HIV.LifeTables | HIV calibrated model life tables for countries with generalized HIV epidemics |

HK80 | Conversion Tools for HK80 Geographical Coordinate System |

hkevp | Spatial Extreme Value Analysis with the Hierarchical Model of Reich and Shaby (2012) |

HKprocess | Hurst-Kolmogorov Process |

HLMdiag | Diagnostic Tools for Hierarchical (Multilevel) Linear Models |

HLSM | Hierarchical Latent Space Network Model (HLSM) |

HMDHFDplus | Read HMD and HFD Data from the Web |

hmeasure | The H-measure and other scalar classification performance metrics |

Hmisc | Harrell Miscellaneous |

HMM | HMM - Hidden Markov Models |

HMMCont | Hidden Markov Model for Continuous Observations Processes |

hmm.discnp | Hidden Markov Models with Discrete Non-Parametric Observation Distributions |

hmmm | hierarchical multinomial marginal models |

HMMpa | Analysing accelerometer data using hidden Markov models |

HMP | Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP |

HMPTrees | Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data |

HMR | Flux Estimation with Static Chamber Data |

hms | Pretty Time of Day |

HMVD | Group Association Test using a Hidden Markov Model |

hnp | Half-Normal Plots with Simulation Envelopes |

hoa | Higher Order Likelihood Inference |

hoardeR | Information Retrieval for Genetic Datasets |

holdem | Texas Holdem simulator |

Holidays | Holiday and Half-Day Data, for Use with the 'TimeWarp' Package |

homals | Gifi Methods for Optimal Scaling |

homeR | Functions useful for building physics |

homomorpheR | Homomorphic Computations in R |

HomoPolymer | Theoretical Model to Simulate Radical Polymerization |

homtest | Homogeneity tests for Regional Frequency Analysis |

hopbyhop | Transmissions and Receptions in a Hop by Hop Network |

hornpa | Horn's (1965) Test to Determine the Number of Components/Factors |

hot.deck | Multiple Hot-Deck Imputation |

HotDeckImputation | Hot Deck Imputation Methods for Missing Data |

Hotelling | Hotelling's T-squared test and variants |

hotspot | Software Hotspot Analysis |

hotspots | Hot spots |

housingData | U.S. Housing Data from 2008 to 2016 |

howmany | A lower bound for the number of correct rejections |

HPbayes | Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling |

hpcwld | High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion |

hpoPlot | Functions for Plotting HPO Terms |

hqmisc | Miscellaneous convenience functions and dataset |

hqreg | Regularization Paths for Lasso or Elastic-Net Penalized Huber Loss Regression and Quantile Regression |

HRM | High-Dimensional Repeated Measures |

hrr | Horizontal rule for the R language |

HSAR | Hierarchical Spatial Autoregressive Model (HSAR) |

HSAUR | A Handbook of Statistical Analyses Using R (1st Edition) |

HSAUR2 | A Handbook of Statistical Analyses Using R (2nd Edition) |

HSAUR3 | A Handbook of Statistical Analyses Using R (3rd Edition) |

hsdar | Manage, Analyse and Simulate Hyperspectral Data |

hSDM | hierarchical Bayesian species distribution models |

hsicCCA | Canonical Correlation Analysis based on Kernel Independence Measures |

hsmm | Hidden Semi Markov Models |

hsphase | Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data |

HSROC | Meta-Analysis of Diagnostic Test Accuracy when Reference Test is Imperfect |

HSSVD | Biclustering with Heterogeneous Variance |

htmltab | Assemble Data Frames from HTML Tables |

htmlTable | Advanced Tables for Markdown/HTML |

htmltools | Tools for HTML |

HTMLUtils | Facilitates Automated HTML Report Creation |

htmlwidgets | HTML Widgets for R |

hts | Hierarchical and Grouped Time Series |

HTSCluster | Clustering high throughput sequencing (HTS) data |

httk | High-Throughput Toxicokinetics |

httpcache | Query Cache for HTTP Clients |

httpcode | 'HTTP' Status Code Helper |

httping | 'Ping' 'URLs' to Time 'Requests' |

httpRequest | Basic HTTP Request |

httpuv | HTTP and WebSocket Server Library |

httr | Tools for Working with URLs and HTTP |

huge | High-Dimensional Undirected Graph Estimation |

HUM | compute HUM value and visualize ROC curves |

humanFormat | Human-friendly formatting functions |

humaniformat | A Parser for Human Names |

humarray | Simplify Analysis and Annotation of Human Microarray Datasets |

hunspell | Morphological Analysis and Spell Checker for R |

hwde | Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci |

HWEBayes | Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing |

HWEintrinsic | Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem |

HW.pval | Testing Hardy-Weinberg Equilibrium for Multiallelic Genes |

hwriter | HTML Writer - Outputs R objects in HTML format |

hwriterPlus | hwriterPlus: Extending the hwriter Package |

hwwntest | Tests of White Noise using Wavelets |

HWxtest | Exact Tests for Hardy-Weinberg Proportions |

hybridEnsemble | Build, Deploy and Evaluate Hybrid Ensembles |

hybridHclust | Hybrid Hierarchical Clustering |

HybridMC | Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques |

hybridModels | Stochastic Hybrid Models in Dynamic Networks |

HydeNet | Hybrid Bayesian Networks Using R and JAGS |

hydroApps | Tools and models for hydrological applications |

hydrogeo | Groundwater data presentation and interpretation |

hydroGOF | Goodness-of-fit functions for comparison of simulated and observed hydrological time series |

HydroMe | R codes for estimating water retention and infiltration model parameters using experimental data |

hydroPSO | Particle Swarm Optimisation, with focus on Environmental Models |

hydrostats | Hydrologic Indices for Daily Time Series Data |

hydroTSM | Time series management, analysis and interpolation for hydrological modelling |

hyfo | Hydrology and Climate Forecasting |

HyperbolicDist | The hyperbolic distribution |

hyperdirichlet | A generalization of the Dirichlet distribution |

hypergea | Hypergeometric Tests |

hypergeo | The Gauss Hypergeometric Function |

hyperSpec | Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...) |

hypervolume | High-Dimensional Kernel Density Estimation and Geometry Operations |

hyphenatr | Tools to Hyphenate Strings Using the 'Hunspell' Hyphenation Library |

HyPhy | Macroevolutionary phylogentic analysis of species trees and gene trees |

hypothesestest | Confidence Intervals and Tests of Statistical Hypotheses |

hysteresis | Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses |

hzar | Hybrid Zone Analysis using R |

IalsaSynthesis | Synthesizing Information Across Collaborating Research |

IASD | Model Selection for Index of Asymmetry Distribution |

IAT | Cleaning and Visualizing Implicit Association Test (IAT) Data |

IATscores | Implicit Association Test Scores Using Robust Statistics |

iBATCGH | Integrative Bayesian Analysis of Transcriptomic and CGH Data |

ibd | INCOMPLETE BLOCK DESIGNS |

IBDhaploRtools | Functions for the Analysis of IBD Haplo Output |

IBDLabels | Convert Between Different IBD-State Labelling Schemes |

ibdreg | Regression Methods for IBD Linkage With Covariates |

IBDsim | Simulation of Chromosomal Regions Shared by Family Members |

ibeemd | Irregular-lattice based ensemble empirical mode decomposition |

ibelief | Belief Function Implementation |

IBHM | Approximation using the IBHM method |

ibmdbR | IBM in-Database Analytics for R |

Iboot | Iboot: iterated bootstrap tests and confidence sets |

ibr | Iterative Bias Reduction |

IBrokers | R API to Interactive Brokers Trader Workstation |

iBUGS | An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets |

iC10 | A Copy Number and Expression-Based Classifier for Breast Tumours |

iC10TrainingData | Training datasets for iC10 package |

IC2 | Inequality and Concentration Indices and Curves |

ic50 | Standardized high-throughput evaluation of cell-based compound screens |

ica | Independent Component Analysis |

ICAFF | Imperialist Competitive Algorithm |

icamix | Estimation of ICA Mixture Models |

icaOcularCorrection | Independent Components Analysis (ICA) based artifact correction |

icapca | Mixed ICA/PCA |

icarus | Calibrates and Reweights Units in Samples |

ICBayes | Bayesian Semiparametric Models for Interval-Censored Data |

ICC | Facilitating Estimation of the Intraclass Correlation Coefficient |

iccbeta | Multilevel model intraclass correlation for slope heterogeneity |

ICC.Sample.Size | Calculation of Sample Size and Power for ICC |

icd | Tools for Working with ICD-9 and ICD-10 Codes, and Finding Comorbidities |

icd9 | Tools for Working with ICD-9 Codes, and Finding Comorbidities |

ICE | Iterated Conditional Expectation |

ICEbox | Individual Conditional Expectation Plot Toolbox |

ICEinfer | Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples |

icenReg | Regression Models for Interval Censored Data |

icensmis | Study Design and Data Analysis in the Presence of Error-Prone Diagnostic Tests and Self-Reported Outcomes |

icesAdvice | Functions Related to ICES Advice |

ICGE | Estimation of number of clusters and identification of atypical units |

ICGOR | Fit Generalized Odds Rate Hazards Model with Interval Censored Data |

ic.infer | Inequality constrained inference in linear normal situations |

iClick | A Button-Based GUI for Financial and Economic Data Analysis |

iCluster | Integrative clustering of multiple genomic data types |

icpsrdata | Reproducible Retrieval from the ICPSR Data Archive |

icRSF | A Modified Random Survival Forest Algorithm |

ICS | Tools for Exploring Multivariate Data via ICS/ICA |

ICSNP | Tools for Multivariate Nonparametrics |

ICsurv | A package for semiparametric regression analysis of interval-censored data |

icsw | Inverse Compliance Score Weighting |

idbg | R debugger |

idbr | R Interface to the US Census Bureau International Data Base API |

idendr0 | Interactive Dendrograms |

identity | Jacquard Condensed Coefficients of Identity |

idm | Incremental Decomposition Methods |

IDPmisc | Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch) |

IDPSurvival | Imprecise Dirichlet Process for Survival Analysis |

idr | Irreproducible discovery rate |

IDSpatialStats | Estimate Global Clustering in Infectious Disease |

IDTurtle | Identify Turtles by their Plastral Biometries |

iDynoR | R Analysis package for iDynoMiCS Simulation Results |

ieeeround | Functions to set and get the IEEE rounding mode |

iemisc | Irucka Embry's Miscellaneous Functions |

iemiscdata | Irucka Embry's Miscellaneous Data Collection |

ifa | Independent Factor Analysis |

iFad | An integrative factor analysis model for drug-pathway association inference |

ifaTools | Toolkit for Item Factor Analysis with OpenMx |

ifctools | Italian Fiscal Code ('Codice Fiscale') Utilities |

IFP | Identifying Functional Polymorphisms |

ifs | Iterated Function Systems |

ifultools | Insightful Research Tools |

iGasso | Statistical Tests and Utilities for Genetic Association |

IGM.MEA | IGM MEA Analysis |

IgorR | Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic' Data) |

igraph | Network Analysis and Visualization |

igraphdata | A Collection of Network Data Sets for the 'igraph' Package |

igraphinshiny | Use 'shiny' to Demo 'igraph' |

igraphtosonia | Convert iGraph graps to SoNIA .son files |

ig.vancouver.2014.topcolour | Instagram 2014 Vancouver Top Colour Dataset |

ihs | Inverse Hyperbolic Sine Distribution |

iki.dataclim | Consistency, Homogeneity and Summary Statistics of Climatological Data |

iLaplace | Improved Laplace Approximation for Integrals of Unimodal Functions |

ilc | Lee-Carter Mortality Models using Iterative Fitting Algorithms |

ILS | Interlaboratory Study |

IM | Orthogonal Moment Analysis |

imageData | Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer |

imager | Image Processing Library Based on CImg |

IMak | Item Maker |

Imap | Interactive Mapping |

imguR | An Imgur.com API Client Package |

IMIS | Increamental Mixture Importance Sampling |

immer | Item Response Models for Multiple Ratings |

IMP | Interactive Model Performance Evaluation |

ImpactIV | Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method |

imPois | Imprecise Inferential Framework for Poisson Sampling Model |

import | An Import Mechanism for R |

ImportExport | Import and Export Data |

imprProbEst | Minimum distance estimation in an imprecise probability model |

imputeLCMD | A collection of methods for left-censored missing data imputation |

imputeMDR | The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data |

imputeMissings | Impute Missing Values in a Predictive Context |

imputeMulti | Imputation Methods for Multivariate Multinomial Data |

imputePSF | Impute Missing Data in Time Series Data with PSF Based Method |

imputeTestbench | Test Bench for Missing Data Imputing Models/Methods Comparison |

imputeTS | Time Series Missing Value Imputation |

imputeYn | Imputing the Last Largest Censored Observation(s) Under Weighted Least Squares |

in2extRemes | Into the extRemes Package |

inarmix | Mixture models for longitudinal count data |

inbreedR | Analysing Inbreeding Based on Genetic Markers |

inctools | Incidence Estimation Tools |

IncucyteDRC | Dose Response Curves from Incucyte Proliferation Assays |

IndependenceTests | Nonparametric tests of independence between random vectors |

indicspecies | Relationship Between Species and Groups of Sites |

inegiR | Integrate INEGIâ€™s (Mexican Stats Office) API with R |

ineq | Measuring Inequality, Concentration, and Poverty |

iNEXT | Interpolation and Extrapolation for Species Diversity |

InfDim | Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories |

inference | Functions to extract inferential values of a fitted model object |

InferenceSMR | Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival |

inferference | Methods for Causal Inference with Interference |

inflection | Finds the inflection point of a curve |

influence.ME | Tools for Detecting Influential Data in Mixed Effects Models |

influenceR | Software Tools to Quantify Structural Importance of Nodes in a Network |

influence.SEM | Case Influence in Structural Equation Models |

infoDecompuTE | Information Decomposition of Two-phase Experiments |

Information | Data Exploration with Information Theory (Weight-of-Evidence and Information Value) |

InformationValue | Performance Analysis and Companion Functions for Binary Classification Models |

informR | Sequence Statistics for Relational Event Models |

infotheo | Information-Theoretic Measures |

infra | An Infrastructure Proxy Function |

infuser | A Very Basic Templating Engine |

infutil | Information Utility |

ini | Read and Write '.ini' Files |

injectoR | R Dependency Injection |

INLABMA | Bayesian Model Averaging with INLA |

inline | Functions to Inline C, C++, Fortran Function Calls from R |

inlinedocs | Convert inline comments to documentation |

inpdfr | Analyse Text Documents Using Ecological Tools |

InPosition | Inference Tests for ExPosition |

insideRODE | insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes |

InSilicoVA | Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm |

insol | Solar Radiation |

install.load | Check, Install and Load CRAN & USGS GRAN Packages |

installr | Using R to Install Stuff (Such As: R, Rtools, RStudio, Git, and More!) |

instaR | Access to Instagram API via R |

insuranceData | A Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance |

intamap | procedures for automated interpolation |

intamapInteractive | procedures for automated interpolation - methods only to be used interactively, not included in intamap package |

IntClust | Integrated Data Analysis via Clustering |

intcox | Iterated Convex Minorant Algorithm for interval censored event data |

IntegratedJM | Joint Modelling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature |

IntegratedMRF | Integrated Prediction using Univariate and Multivariate Random Forests |

Interact | Tests for marginal interactions in a 2 class response model |

interactionTest | Calculates Critical Test Statistics to Control False Discovery and Familywise Error Rates in Marginal Effects Plots |

InteractiveIGraph | interactive network analysis and visualization |

interAdapt | interAdapt |

Interatrix | Compute Chi-Square Measures with Corrections |

intercure | Cure Rate Estimators for Interval Censored Data |

interferenceCI | Exact Confidence Intervals in the Presence of Interference |

intergraph | Coercion Routines for Network Data Objects |

internetarchive | An API Client for the Internet Archive |

interplot | Plot the Effects of Variables in Interaction Terms |

Interpol | Interpolation of amino acid sequences |

Interpol.T | Hourly interpolation of multiple temperature daily series |

interpretR | Binary Classifier and Regression Model Interpretation Functions |

InterSIM | Simulation of Inter-Related Genomic Datasets |

InterVA4 | Replicate and Analyse InterVA4 |

interval | Weighted Logrank Tests and NPMLE for interval censored data |

intervals | Tools for Working with Points and Intervals |

interventionalDBN | Interventional Inference for Dynamic Bayesian Networks |

IntLik | Numerical Integration for Integrated Likelihood |

IntNMF | Integrative Clustering of Multiple Genomic Dataset |

intpoint | linear programming solver by the interior point method and graphically (two dimensions) |

inTrees | Interpret Tree Ensembles |

intReg | Interval Regression |

intRegGOF | Integrated Regression Goodness of Fit |

introgress | methods for analyzing introgression between divergent lineages |

intsvy | International Assessment Data Manager |

InvariantCausalPrediction | Invariant Causal Prediction |

InventorymodelPackage | Inventorymodel |

investr | Inverse Estimation/Calibration Functions |

invGauss | Threshold regression that fits the (randomized drift) inverse Gaussian distribution to survival data |

invLT | Inversion of Laplace-Transformed Functions |

io | A Unified Framework for Input-Output Operations in R |

ioncopy | Calling Copy Number Alterations in Amplicon Sequencing Data |

ionflows | Calculate the Number of Required Flows for Semiconductor Sequencing |

ionr | Test for Indifference of Indicator |

iopsych | Methods for Industrial/Organizational Psychology |

iosmooth | Functions for smoothing with infinite order flat-top kernels |

iotools | I/O Tools for Streaming |

ipdmeta | Tools for subgroup analyses with multiple trial data using aggregate statistics |

ipdw | Spatial Interpolation by Inverse Path Distance Weighting |

ipflasso | Integrative Lasso with Penalty Factors |

ipfp | Fast Implementation of the Iterative Proportional Fitting Procedure in C |

iplots | iPlots - interactive graphics for R |

IPMpack | Builds and analyses Integral Projection Models (IPMs) |

ipred | Improved Predictors |

ips | Interfaces to Phylogenetic Software in R |

IPSUR | Introduction to Probability and Statistics Using R |

iptools | Manipulate, Validate and Resolve 'IP' Addresses |

ipw | Estimate Inverse Probability Weights |

IQCC | Improved Quality Control Charts |

iqLearn | Interactive Q-Learning |

iqspr | Generate Chemical Strings (SMILES) with the Inverse QSPR Model |

irace | Iterated Racing Procedures |

iRafNet | Integrative Random Forest for Gene Regulatory Network Inference |

iRefR | iRefIndex Manager |

iRegression | Regression methods for interval-valued variables |

iRepro | Reproducibility for Interval-Censored Data |

IRISMustangMetrics | Statistics and Metrics for Seismic Data |

IRISSeismic | Classes and Methods for Seismic Data Analysis |

irlba | Fast Truncated SVD, PCA and Symmetric Eigendecomposition for Large Dense and Sparse Matrices |

irr | Various Coefficients of Interrater Reliability and Agreement |

irtDemo | Item Response Theory Demo Collection |

irtoys | Simple interface to the estimation and plotting of IRT models |

irtProb | Utilities and Probability Distributions Related to Multidimensional Person Item Response Models |

irtrees | Estimation of Tree-Based Item Response Models |

IRTShiny | Item Response Theory via Shiny |

isa2 | The Iterative Signature Algorithm |

ISBF | Iterative Selection of Blocks of Features - ISBF |

isdals | Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences |

ISDA.R | interval symbolic data analysis for R |

IsingFit | Fitting Ising models using the eLasso method |

isingLenzMC | Monte Carlo for Classical Ising Model |

IsingSampler | Sampling Methods and Distribution Functions for the Ising Model |

island | Stochastic Island Biogeography Theory Made Easy |

ISLR | Data for An Introduction to Statistical Learning with Applications in R |

ismev | An Introduction to Statistical Modeling of Extreme Values |

Iso | Functions to Perform Isotonic Regression |

IsoCI | Confidence intervals for current status data based on transformations and bootstrap |

isocir | Isotonic Inference for Circular data |

ISOcodes | Selected ISO Codes |

IsoGene | Order-Restricted Inference for Microarray Experiments |

isopam | Isopam (Clustering) |

isopat | Calculation of isotopic pattern for a given molecular formula |

isoph | Isotonic Proportional Hazards Model |

IsoplotR | Statistical Toolbox for Radiometric Geochronology |

ISOpureR | Deconvolution of Tumour Profiles |

isotone | Active Set and Generalized PAVA for Isotone Optimization |

isotonic.pen | Penalized Isotonic Regression in one and two dimensions |

IsotopeR | Stable Isotope Mixing Model |

ISOweek | Week of the year and weekday according to ISO 8601 |

isva | Independent Surrogate Variable Analysis |

ISwR | Introductory Statistics with R |

itcSegment | Individual Tree Crowns Segmentation |

ITEMAN | Classical Item Analysis |

iteRates | Parametric rate comparison |

iterators | Provides Iterator Construct for R |

iterLap | Approximate probability densities by iterated Laplace Approximations |

iterpc | Efficient Iterator for Permutations and Combinations |

itertools | Iterator Tools |

itertools2 | itertools2: Functions creating iterators for efficient looping |

itree | Tools for classification and regression trees, with an emphasis on interpretability |

its | Irregular Time Series |

itsadug | Interpreting Time Series and Autocorrelated Data Using GAMMs |

itsmr | Time series analysis package for students |

IUPS | Incorporating Uncertainties in Propensity Scores |

ivbma | Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors |

ivfixed | Instrumental fixed effect panel data model |

ivlewbel | Uses heteroscedasticity to estimate mismeasured and endogenous regressor models |

ivmodel | Statistical Inference and Sensitivity Analysis for Instrumental Variables Model |

ivpack | Instrumental Variable Estimation |

ivpanel | Instrumental Panel Data Models |

ivprobit | Instrumental variables probit model |

iWeigReg | Improved methods for causal inference and missing data problems |

iWISA | Wavelet-Based Index of Storm Activity |

jaatha | Simulation-Based Maximum Likelihood Parameter Estimation |

jackknifeKME | Jackknife Estimates of Kaplan-Meier Estimators or Integrals |

jackstraw | Statistical Inference of Variables Driving Systematic Variation |

JacobiEigen | Classical Jacobi Eigensolution Algorithm |

JADE | Blind Source Separation Methods Based on Joint Diagonalization and Some BSS Performance Criteria |

jagsUI | A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses |

JAGUAR | Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL) |

james.analysis | Analysis Tools for the 'JAMES' Framework |

janeaustenr | Jane Austen's Complete Novels |

JASPAR | R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices |

JavaGD | Java Graphics Device |

JBTools | Misc Small Tools and Helper Functions for Other Code of J. Buttlar |

jetset | One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays |

JGEE | Joint Generalized Estimating Equation Solver |

JGL | Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes |

JGR | JGR - Java GUI for R |

jiebaR | Chinese Text Segmentation |

jiebaRD | Chinese Text Segmentation Data for jiebaR Package |

JM | Joint Modeling of Longitudinal and Survival Data |

JMbayes | Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach |

jmcm | Joint Mean-Covariance Models using 'Armadillo' and S4 |

JMdesign | Joint Modeling of Longitudinal and Survival Data - Power Calculation |

jmetrik | Tools for Interacting with 'jMetrik' |

Jmisc | Julian Miscellaneous Function |

jmotif | Tools for Time Series Analysis Based on Symbolic Aggregate Dicretization |

jmuOutlier | Permutation Tests for Nonparametric Statistics |

Johnson | Johnson Transformation |

JohnsonDistribution | Johnson Distribution |

joineR | Joint modelling of repeated measurements and time-to-event data |

joint.Cox | Penalized Likelihood Estimation and Dynamic Prediction under the Joint Frailty-Copula Models Between Tumour Progression and Death for Meta-Analysis |

jointDiag | Joint Approximate Diagonalization of a set of square matrices |

jointPm | Risk estimation using the joint probability method |

JointRegBC | Joint Modelling of Mixed Correlated Binary and Continuous Responses : A Latent Variable Approach |

jomo | Multilevel Joint Modelling Multiple Imputation |

JOP | Joint Optimization Plot |

JoSAE | Functions for some Unit-Level Small Area Estimators and their Variances |

jpeg | Read and write JPEG images |

JPEN | Covariance and Inverse Covariance Matrix Estimation Using Joint Penalty |

JPSurv | Methods for population-based cancer survival analysis |

jqr | Client for 'jq', a JSON Processor |

JRF | Joint Random Forest (JRF) for the Simultaneous Estimation of Multiple Related Networks |

jrich | Jack-Knife Support for Evolutionary Distinctiveness Indices I and W |

jrvFinance | Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes |

js | Tools for Working with JavaScript in R |

jSonarR | jSonar Analytics Platform API for R |

jsonlite | A Robust, High Performance JSON Parser and Generator for R |

jtrans | Johnson Transformation for Normality |

jug | Create a Simple Web API for your R Functions |

Julia | Fractal Image Data Generator |

junr | Access Open Data Through the Junar API |

jvnVaR | Value at Risk |

KANT | Package to identify and sort genes overexpressed |

kantorovich | Kantorovich Distance Between Probability Measures |

KappaGUI | GUI for Cohen's and Fleiss' Kappa |

kappalab | Non-Additive Measure and Integral Manipulation Functions |

kappaSize | Sample Size Estimation Functions for Studies of Interobserver Agreement |

KappaV | Calculates "vectorial Kappa", an index of congruence between patchy mosaics |

kaps | K-Adaptive Partitioning for Survival data |

karaoke | Remove Vocals from a Song |

KATforDCEMRI | Kinetic analysis and visualization of DCE-MRI data |

kcirt | k-Cube Thurstonian IRT Models |

kdecopula | Kernel Smoothing for Bivariate Copula Densities |

kdetrees | Nonparametric method for identifying discordant phylogenetic trees |

kedd | Kernel Estimator and Bandwidth Selection for Density and Its Derivatives |

keep | Arrays with Better Control over Dimension Dropping |

kelvin | Calculate Solutions to the Kelvin Differential Equation using Bessel Functions |

Kendall | Kendall rank correlation and Mann-Kendall trend test |

kequate | The Kernel Method of Test Equating |

kerdiest | Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions |

KERE | Expectile Regression in Reproducing Kernel Hilbert Space |

kergp | Gaussian Process Laboratory |

kernDeepStackNet | Kernel Deep Stacking Networks |

kerndwd | Distance Weighted Discrimination (DWD) and Kernel Methods |

kernelFactory | Kernel Factory: An Ensemble of Kernel Machines |

Kernelheaping | Kernel Density Estimation for Heaped and Rounded Data |

kernlab | Kernel-Based Machine Learning Lab |

kernscr | Kernel Machine Score Test for Semi-Competing Risks |

KernSmooth | Functions for Kernel Smoothing Supporting Wand & Jones (1995) |

KernSmoothIRT | Nonparametric Item Response Theory |

keyplayer | Locating Key Players in Social Networks |

keypress | Wait for a Key Press in a Terminal |

KFAS | Kalman Filter and Smoother for Exponential Family State Space Models |

kfigr | Integrated Code Chunk Anchoring and Referencing for R Markdown Documents |

KFKSDS | Kalman Filter, Smoother and Disturbance Smoother |

kimisc | Kirill's Miscellaneous Functions |

kin.cohort | Analysis of Kin-Cohort Studies |

kineticF | Framework for the Analysis of Kinetic Visual Field Data |

kinfit | Routines for Fitting Kinetic Models to Chemical Degradation Data |

kinn | An Implementation of 'kinn' Algorithm, a Graph Based Regression Model |

kinship2 | Pedigree Functions |

kissmig | a Keep It Simple Species Migration Model |

kitagawa | Spectral response of water wells to harmonic strain and pressure |

kknn | Weighted k-Nearest Neighbors |

klaR | Classification and visualization |

klausuR | Multiple Choice Test Evaluation |

klin | Linear equations with Kronecker structure |

kmc | Kaplan-Meier Estimator with Constraints for Right Censored Data – a Recursive Computational Algorithm |

km.ci | Confidence intervals for the Kaplan-Meier estimator |

kmconfband | Kaplan-Meier Simultaneous Confidence Band for the Survivor Function |

KMDA | Kernel-Based Metabolite Differential Analysis |

kmeans.ddR | Distributed k-Means for Big Data using 'ddR' API |

kmi | Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting |

Kmisc | Kevin Miscellaneous |

kml | K-Means for Longitudinal Data |

kml3d | K-Means for Joint Longitudinal Data |

kmlcov | Clustering longitudinal data using the likelihood as a metric of distance |

kmlShape | K-Means for Longitudinal Data using Shape-Respecting Distance |

kmodR | K-Means with Simultaneous Outlier Detection |

KMsurv | Data sets from Klein and Moeschberger (1997), Survival Analysis |

knitcitations | Citations for 'Knitr' Markdown Files |

knitLatex | 'Knitr' Helpers - Mostly Tables |

knitr | A General-Purpose Package for Dynamic Report Generation in R |

knitrBootstrap | Knitr Bootstrap Framework |

knncat | Nearest-neighbor Classification with Categorical Variables |

knnGarden | Multi-distance based k-Nearest Neighbors |

knnIndep | Independence tests and benchmarks |

knockoff | Knockoff Filter for Controlling the False Discovery Rate |

kobe | Tools for the provision of scientific fisheries management advice |

KODAMA | Knowledge discovery by accuracy maximization |

kofnGA | A Genetic Algorithm for Fixed-Size Subset Selection |

KOGMWU | Functional Summary and Meta-Analysis of Gene Expression Data |

kohonen | Supervised and Unsupervised Self-Organising Maps |

kolmim | An Improved Evaluation of Kolmogorov's Distribution |

KoNLP | Korean NLP Package |

koRpus | An R Package for Text Analysis |

KoulMde | Koul's Minimum Distance Estimation in Linear Regression and Autoregression Model |

Kpart | Spline Fitting |

kpodclustr | Method for Clustering Partially Observed Data |

kriens | Continuation Passing Style Development |

kriging | Ordinary Kriging |

KrigInv | Kriging-based Inversion for Deterministic and Noisy Computer Experiments |

KRLS | Kernel-based Regularized Least squares (KRLS) |

krm | Kernel Based Regression Models |

ks | Kernel Smoothing |

kSamples | K-Sample Rank Tests and their Combinations |

KScorrect | Lilliefors-Corrected Kolmogorov-Smirnoff Goodness-of-Fit Tests |

kselection | Selection of K in K-Means Clustering |

ksrlive | Identify Kinase Substrate Relationships Using Dynamic Data |

kst | Knowledge Space Theory |

ktsolve | Configurable function for solving families of nonlinear equations |

ktspair | k-Top Scoring Pairs for Microarray Classification |

kulife | Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen |

kwb.hantush | Calculation of Groundwater Mounding Beneath an Infiltration Basin |

kyotil | Utility Functions by Youyi, Krisz and Others |

kza | Kolmogorov-Zurbenko Adaptive Filters |

kzft | Kolmogorov-Zurbenko Fourier Transform and Applications |

kzs | Kolmogorov-Zurbenko Spatial Smoothing and Applications |

L1pack | Routines for L1 Estimation |

l2boost | l2boost - Friedman's boosting algorithm for regularized linear regression |

labdsv | Ordination and Multivariate Analysis for Ecology |

labeledLoop | Labeled Loop |

labeling | Axis Labeling |

labelled | Manipulating Labelled Data |

labelrank | Predicting Rankings of Labels |

label.switching | Relabelling MCMC Outputs of Mixture Models |

labeltodendro | Convert labels or tables to a dendrogram |

labstatR | Libreria Del Laboratorio Di Statistica Con R |

labstats | Data Sets for the Book "Experimental Design for Laboratory Biologists" |

laeken | Estimation of indicators on social exclusion and poverty |

laercio | Duncan test, Tukey test and Scott-Knott test |

LaF | Fast access to large ASCII files |

laGP | Local Approximate Gaussian Process Regression |

Lahman | Sean Lahman's Baseball Database |

LakeMetabolizer | Tools for the Analysis of Ecosystem Metabolism |

lakemorpho | Lake Morphometry Metrics in R |

laketemps | Lake Temperatures Collected by Situ and Satellite Methods from 1985-2009 |

Lambda4 | Collection of Internal Consistency Reliability Coefficients |

lambda.r | Modeling Data with Functional Programming |

lambda.tools | Tools for Modeling Data with Functional Programming |

LambertW | Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data |

lamW | Lambert-W Function |

LANDD | Liquid Association for Network Dynamics Detection |

landest | Landmark Estimation of Survival and Treatment Effect |

landpred | Landmark Prediction of a Survival Outcome |

landsat | Radiometric and topographic correction of satellite imagery |

landsat8 | Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or Temperature |

landscapeR | Categorical Landscape Simulation Facility |

Langevin | Langevin Analysis in One and Two Dimensions |

languageR | Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics" |

LaplaceDeconv | Laplace Deconvolution with Noisy Discrete Non-Equally Spaced Observations on a Finite Time Interval |

lar | History of labour relations package |

LARF | Local Average Response Functions for Instrumental Variable Estimation of Treatment Effects |

lars | Least Angle Regression, Lasso and Forward Stagewise |

laser | Likelihood Analysis of Speciation/Extinction Rates from Phylogenies |

lasso2 | L1 constrained estimation aka ‘lasso’ |

LassoBacktracking | Modelling Interactions in High-Dimensional Data with Backtracking |

lassoscore | High-Dimensional Inference with the Penalized Score Test |

lassoshooting | L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting |

lasvmR | A Simple Wrapper for the LASVM Solver |

latdiag | Draws Diagrams Useful for Checking Latent Scales |

latentnet | Latent Position and Cluster Models for Statistical Networks |

Laterality | Functions to Calculate Common Laterality Statistics in Primatology |

latex2exp | Use LaTeX Expressions in Plots |

lattice | Trellis Graphics for R |

latticeDensity | Density estimation and nonparametric regression on irregular regions |

latticeExtra | Extra Graphical Utilities Based on Lattice |

LatticeKrig | Multiresolution Kriging Based on Markov Random Fields |

lava | Latent Variable Models |

lavaan | Latent Variable Analysis |

lavaan.shiny | Latent Variable Analysis with Shiny |

lavaan.survey | Complex Survey Structural Equation Modeling (SEM) |

lava.tobit | LVM with censored and binary outcomes |

lawn | Client for 'Turfjs' for 'Geospatial' Analysis |

lawstat | Tools for Biostatistics, Public Policy, and Law |

lazy | Lazy Learning for Local Regression |

lazyData | A LazyData Facility |

lazyeval | Lazy (Non-Standard) Evaluation |

lazysql | Lazy SQL Programming |

lazyWeave | LaTeX Wrappers for R Users |

lba | Latent Budget Analysis for Compositional Data |

lbfgs | Limited-memory BFGS Optimization |

lbfgsb3 | Limited Memory BFGS Minimizer with Bounds on Parameters |

lbiassurv | Length-biased correction to survival curve estimation |

LCA | Localised Co-Dependency Analysis |

LCAextend | Latent Class Analysis (LCA) with familial dependence in extended pedigrees |

lcda | Latent Class Discriminant Analysis |

LCFdata | Data sets for package “LMERConvenienceFunctions” |

LCMCR | Bayesian Nonparametric Latent-Class Capture-Recapture |

lcmm | Extended Mixed Models Using Latent Classes and Latent Processes |

lcopula | Liouville Copulas |

lctools | Local Correlation, Spatial Inequalities, Geographically Weighted Regression and Other Tools |

lda | Collapsed Gibbs Sampling Methods for Topic Models |

ldamatch | Multivariate Condition Matching by Backwards Elimination Using Linear Discriminant Analysis |

ldatuning | Tuning of the LDA Models Parameters |

LDAvis | Interactive Visualization of Topic Models |

ldbounds | Lan-DeMets Method for Group Sequential Boundaries |

LDcorSV | Linkage disequilibrium corrected by the structure and the relatedness |

LDheatmap | Graphical display of pairwise linkage disequilibria between SNPs |

ldlasso | LD LASSO Regression for SNP Association Study |

LDOD | Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models |

LDPD | Probability of Default Calibration |

ldr | Methods for likelihood-based dimension reduction in regression |

LDRTools | Tools for Linear Dimension Reduction |

LDtests | Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium |

leaderCluster | Leader Clustering Algorithm |

LeafAngle | Analysis and Visualization of Plant Leaf Angle Distributions |

LeafArea | Rapid Digital Image Analysis of Leaf Area |

leaflet | Create Interactive Web Maps with the JavaScript 'Leaflet' Library |

leafletR | Interactive Web-Maps Based on the Leaflet JavaScript Library |

LEAP | Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering |

LEAPFrOG | Likelihood Estimation of Admixture in Parents From Offspring Genotypes |

leapp | latent effect adjustment after primary projection |

leaps | regression subset selection |

LearnBayes | Functions for Learning Bayesian Inference |

learningr | Data and functions to accompany the book "Learning R" |

learNN | Examples of Neural Networks |

learnstats | An Interactive Environment for Learning Statistics |

lefse | Phylogenetic and Functional Analyses for Ecology |

leiv | Bivariate Linear Errors-In-Variables Estimation |

LeLogicielR | Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french) |

lessR | Less Code, More Results |

lestat | A package for LEarning STATistics |

letsR | Tools for Data Handling and Analysis in Macroecology |

lettercase | Utilities for Formatting Strings with Consistent Capitalization, Word Breaks and White Space |

LexisPlotR | Plot Lexis Diagrams for Demographic Purposes |

lfactors | Factors with Levels |

lfda | Local Fisher Discriminant Analysis |

LFDR.MLE | Estimation of the Local False Discovery Rates by Type II Maximum Likelihood Estimation |

lfe | Linear Group Fixed Effects |

lfl | Linguistic Fuzzy Logic |

lfstat | Calculation of Low Flow Statistics for Daily Stream Flow Data |

lga | Tools for linear grouping analysis (LGA) |

lgarch | Simulation and Estimation of Log-GARCH Models |

lgcp | Log-Gaussian Cox Process |

LGEWIS | Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Gene-Environment-Wide Interaction Studies |

LGRF | Set-Based Tests for Genetic Association in Longitudinal Studies |

lgtdl | A set of methods for longitudinal data objects |

lhs | Latin Hypercube Samples |

libamtrack | Computational Routines for Proton and Ion Radiotherapy |

LiblineaR | Linear Predictive Models Based on the LIBLINEAR C/C++ Library |

LiblineaR.ACF | Linear Classification with Online Adaptation of Coordinate Frequencies |

Libra | Linearized Bregman Algorithms for Generalized Linear Models |

LICORS | Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data |

LICurvature | Sensitivity Analysis for Case Weight in Normal Linear Regression |

lifecontingencies | Financial and Actuarial Mathematics for Life Contingencies |

lifecourse | Quantification of Lifecourse Fluidity |

LifeHist | Life History Models of Individuals |

LifeTables | Two-Parameter HMD Model Life Table System |

lift | Compute the Top Decile Lift and Plot the Lift Curve |

liftr | Dockerize R Markdown Documents |

LightningR | Tools for Communication with Lightning-Viz Server |

lightsout | Implementation of the 'Lights Out' Puzzle Game |

LIHNPSD | Poisson Subordinated Distribution |

likelihood | Methods for Maximum Likelihood Estimation |

likelihoodAsy | Functions for Likelihood Asymptotics |

likeLTD | Tools to Evaluate DNA Profile Evidence |

likert | Functions to Analyze and Visualize Likert Type Items |

LIM | Linear Inverse Model examples and solution methods |

limitplot | Jitter/CI Plot with Ordered Points Below the Limit of Detection |

limSolve | Solving Linear Inverse Models |

linbin | Binning and Plotting of Linearly Referenced Data |

LinCal | Static Univariate Frequentist and Bayesian Linear Calibration |

LindenmayeR | Functions to Explore L-Systems (Lindenmayer Systems) |

LindleyR | The Lindley Distribution and Its Modifications |

LinearizedSVR | Linearized Support Vector Regression |

LinearRegressionMDE | Minimum Distance Estimation in Linear Regression Model |

linear.tools | Manipulate Formulas and Evaluate Marginal Effects |

linERR | Linear Excess Relative Risk Model |

lineup | Lining Up Two Sets of Measurements |

linkcomm | Tools for Generating, Visualizing, and Analysing Link Communities in Networks |

LinkedMatrix | Column-Linked and Row-Linked Matrices |

linkim | Linkage information based genotype imputation method |

linkR | 3D Lever and Linkage Mechanism Modeling |

linLIR | linear Likelihood-based Imprecise Regression |

linprog | Linear Programming / Optimization |

LinRegInteractive | Interactive Interpretation of Linear Regression Models |

LINselect | Selection of Linear Estimators |

lint | Tools to check R code style |

lintools | Manipulation of Linear Systems of (in)Equalities |

lintr | Static R Code Analysis |

lira | LInear Regression in Astronomy |

liso | Fitting lasso penalised additive isotone models |

lisp | List-processing Ã la SRFI-1 |

lisrelToR | Import output from LISREL into R |

list | Statistical Methods for the Item Count Technique and List Experiment |

listenv | Environments Behaving (Almost) as Lists |

LIStest | Tests of independence based on the Longest Increasing Subsequence |

listWithDefaults | List with Defaults |

littler | R at the Command-Line via 'r' |

livechatR | R Wrapper for LiveChat REST API |

ljr | Logistic Joinpoint Regression |

llama | Leveraging Learning to Automatically Manage Algorithms |

lle | Locally linear embedding |

lllcrc | Local Log-linear Models for Capture-Recapture |

LLSR | Data Analysis of Liquid-Liquid Systems |

lm.beta | Add Standardized Regression Coefficients to lm-Objects |

lm.br | Linear Model with Breakpoint |

lme4 | Linear Mixed-Effects Models using 'Eigen' and S4 |

lmec | Linear Mixed-Effects Models with Censored Responses |

lmem.gwaser | Linear Mixed Effects Models for Genome-Wide Association Studies |

lmem.qtler | Linear Mixed Effects Models for QTL Mapping for Multienvironment and Multitrait Analysis |

lmeNB | Compute the Personalized Activity Index Based on a Negative Binomial Model |

lmeNBBayes | Compute the Personalized Activity Index Based on a Flexible Bayesian Negative Binomial Model |

lmenssp | Linear Mixed Effects Models with Non-Stationary Stochastic Processes |

LMERConvenienceFunctions | Model Selection and Post-hoc Analysis for (G)LMER Models |

lmerTest | Tests in Linear Mixed Effects Models |

lmeSplines | Add smoothing spline modelling capability to nlme |

LMest | Latent Markov Models with and without Covariates |

lmeVarComp | Testing for a subset of variance components in linear mixed models |

lmf | Functions for estimation and inference of selection in age-structured populations |

lmfor | Functions for Forest Biometrics |

lmm | Linear Mixed Models |

lmmlasso | Linear mixed-effects models with Lasso |

lmmot | Multiple Ordinal Tobit (MOT) Model |

lmms | Linear Mixed Effect Model Splines for Modelling and Analysis of Time Course Data |

lmodel2 | Model II Regression |

lmom | L-moments |

lmomco | L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions |

Lmoments | L-Moments and Quantile Mixtures |

lmomRFA | Regional frequency analysis using L-moments |

lmSupport | Support for Linear Models |

lmtest | Testing Linear Regression Models |

LncMod | Predicting Modulator and Functional/Survival Analysis |

LncPath | Identifying the Pathways Regulated by LncRNA Sets of Interest |

loa | Lattice Options and Add-Ins |

localdepth | Local Depth |

localgauss | Estimating Local Gaussian Parameters |

localsolver | R API to LocalSolver |

locfdr | Computes Local False Discovery Rates |

LocFDRPois | Functions for Performing Local FDR Estimation when Null and Alternative are Poisson |

locfit | Local Regression, Likelihood and Density Estimation |

locits | Test of Stationarity and Localized Autocovariance |

Lock5Data | Datasets for "Statistics: UnLocking the Power of Data" |

Lock5withR | Datasets for 'Statistics: Unlocking the Power of Data' |

locpol | Kernel local polynomial regression |

lodGWAS | Genome-Wide Association Analysis of a Biomarker Accounting for Limit of Detection |

loe | Local Ordinal Embedding |

log4r | A simple logging system for R, based on log4j |

logbin | Relative Risk Regression Using the Log-Binomial Model |

LogConcDEAD | Log-concave Density Estimation in Arbitrary Dimensions |

logconcens | Maximum likelihood estimation of a log-concave density based on censored data |

logcondens | Estimate a Log-Concave Probability Density from iid Observations |

logcondens.mode | Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode |

logcondiscr | Estimate a Log-Concave Probability Mass Function from Discrete i.i.d. Observations |

logconPH | CoxPH Model with Log Concave Baseline Distribution |

logging | R logging package |

LogicForest | Logic Forest |

LOGICOIL | LOGICOIL: multi-state prediction of coiled-coil oligomeric state |

LogicOpt | Truth Table Logic Optimizer |

LogicReg | Logic Regression |

logistf | Firth's bias reduced logistic regression |

LogisticDx | Diagnostic Tests for Models with a Binomial Response |

logisticPCA | Binary Dimensionality Reduction |

LOGIT | Functions, Data and Code for Binary and Binomial Data |

logitchoice | Fitting l2-regularized logit choice models via generalized gradient descent |

LogitNet | Infer network based on binary arrays using regularized logistic regression |

logitnorm | Functions for the logitnormal distribution |

loglognorm | Double log normal distribution functions |

logmult | Log-Multiplicative Models, Including Association Models |

LogrankA | Logrank Test for Aggregated Survival Data |

logspline | Logspline Density Estimation Routines |

lokern | Kernel Regression Smoothing with Local or Global Plug-in Bandwidth |

lomb | Lomb-Scargle Periodogram |

longCatEDA | Package for Plotting Categorical Longitudinal and Time-Series Data |

longclust | Model-Based Clustering and Classification for Longitudinal Data |

longitudinal | Analysis of Multiple Time Course Data |

longitudinalData | Longitudinal Data |

longmemo | Statistics for Long-Memory Processes (Jan Beran) – Data and Functions |

longpower | Sample Size Calculations for Longitudinal Data |

longurl | Expand Short URLs Using the 'LongURL' API |

loo | Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models |

lookupTable | Look-Up Tables using S4 |

loop | loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology |

LoopAnalyst | A Collection of Tools to Conduct Levins' Loop Analysis |

loopr | Uses an Archive to Amend Previous Stages of a Pipe using Current Output |

lordif | Logistic Ordinal Regression Differential Item Functioning using IRT |

lorec | LOw Rand and sparsE Covariance matrix estimation |

LOST | Missing morphometric data simulation and estimation |

LotkasLaw | Runs Lotka's Law which is One of the Special Applications of Zipf's Law |

LowRankQP | Low Rank Quadratic Programming |

lpbrim | LP-BRIM Bipartite Modularity |

lpc | Lassoed principal components for testing significance of features |

LPCM | Local Principal Curve Methods |

lpint | Local polynomial estimators of intensity function or its derivatives |

LPM | Linear Parametric Models Applied to Hydrological Series |

lpme | Local Polynomial Estimator in Measurement Error Models |

LPmerge | Merging linkage maps by linear programming |

lpmodeler | Modeler for linear programs (LP) and mixed integer linear programs (MILP) |

LPR | Lasso and Partial Ridge |

lpridge | Local Polynomial (Ridge) Regression |

LPS | Linear Predictor Score, for Binary Inference from Multiple Continuous Variables |

lpSolve | Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs |

lpSolveAPI | R Interface to 'lp_solve' Version 5.5.2.0 |

LPStimeSeries | Learned Pattern Similarity and Representation for Time Series |

LPTime | LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series Modelling |

lqa | Penalized Likelihood Inference for GLMs |

lqmm | Linear Quantile Mixed Models |

lqr | Robust Linear Quantile Regression |

LRcontrast | Dose Response Signal Detection under Model Uncertainty |

lrequire | Sources an R "Module" with Caching & Encapsulation, Returning Exported Vars |

lrgs | Linear Regression by Gibbs Sampling |

lrmest | Different Types of Estimators to Deal with Multicollinearity |

LRTH | A Likelihood Ratio Test Accounting for Genetic Heterogeneity |

LS2W | Locally stationary two-dimensional wavelet process estimation scheme |

LS2Wstat | A Multiscale Test of Spatial Stationarity for LS2W processes |

lsa | Latent Semantic Analysis |

LSAfun | Applied Latent Semantic Analysis (LSA) Functions |

lsbclust | Least-Squares Bilinear Clustering for Three-Way Data |

LSC | Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data |

LSD | Lots of Superior Depictions |

LSDinterface | Reading LSD Results (.res) Files |

lsdv | Least square dummy variable regression |

lsei | Solving Least Squares Problems under Equality/Inequality Constraints |

lsgl | Linear Sparse Group Lasso |

lshorth | The Length of the Shorth |

lsl | Latent Structure Learning |

lsmeans | Least-Squares Means |

LSMonteCarlo | American options pricing with Least Squares Monte Carlo method |

LSPFP | Lysate and Secretome Peptide Feature Plotter |

lspls | LS-PLS Models |

lsr | Companion to "Learning Statistics with R" |

lss | the accelerated failure time model to right censored data based on least-squares principle |

LSTS | Locally Stationary Time Series |

ltbayes | Simulation-Based Bayesian Inference for Latent Traits of Item Response Models |

ltm | Latent Trait Models under IRT |

ltmle | Longitudinal Targeted Maximum Likelihood Estimation |

LTPDvar | LTPD and AOQL Plans for Acceptance Sampling Inspection by Variables |

LTR | Perform LTR analysis on microarray data |

ltsa | Linear Time Series Analysis |

ltsbase | Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method |

ltsk | Local Time Space Kriging |

lubridate | Make Dealing with Dates a Little Easier |

luca | Likelihood inference from case-control data Under Covariate Assumptions (LUCA) |

lucid | Printing Floating Point Numbers in a Human-Friendly Format |

lucr | Currency Formatting and Conversion |

lulcc | Land Use Change Modelling in R |

lumendb | Lumen Database API Client |

Luminescence | Comprehensive Luminescence Dating Data Analysis |

lunar | Lunar Phase & Distance, Seasons and Other Environmental Factors |

luzlogr | Lightweight Logging for R Scripts |

lvm4net | Latent Variable Models for Networks |

LVMMCOR | A Latent Variable Model for Mixed Continuous and Ordinal Responses |

lvplot | Letter Value 'Boxplots' |

LW1949 | An Automated Approach to Evaluating Dose-Effect Experiments Following Litchfield and Wilcoxon (1949) |

lxb | Fast LXB File Reader |

lymphclon | Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates |

M3 | Reading M3 files |

M4comp | Data from the M4 Time Series Forecasting Competition |

m4fe | Models for Financial Economics |

maboost | Binary and Multiclass Boosting Algorithms |

MAc | Meta-Analysis with Correlations |

machina | Machina Time Series Generation and Backtesting |

MAclinical | Class prediction based on microarray data and clinical parameters |

MAd | Meta-Analysis with Mean Differences |

mada | Meta-Analysis of Diagnostic Accuracy |

maddison | Maddison Project Database |

madness | Automatic Differentiation of Multivariate Operations |

mads | Multi-Analysis Distance Sampling |

madsim | A Flexible Microarray Data Simulation Model |

Maeswrap | Wrapper Functions for MAESTRA/MAESPA |

magclass | Data Class and Tools for Handling Spatial-Temporal Data |

magic | create and investigate magic squares |

magicaxis | Pretty Scientific Plotting with Minor-Tick and log Minor-Tick Support |

magrittr | A Forward-Pipe Operator for R |

maGUI | A Graphical User Interface for Microarray Data Analysis |

Sending Email Notifications from R | |

mailR | A Utility to Send Emails from R |

MAINT.Data | Model and Analyse Interval Data |

MakefileR | Create 'Makefiles' Using R |

makeProject | Creates an empty package framework for the LCFD format |

MALDIquant | Quantitative Analysis of Mass Spectrometry Data |

MALDIquantForeign | Import/Export Routines for MALDIquant |

mallet | A wrapper around the Java machine learning tool MALLET |

MAMA | Meta-Analysis of MicroArray |

MAMS | Designing Multi-Arm Multi-Stage Studies |

MAMSE | Calculation of Minimum Averaged Mean Squared Error (MAMSE) weights |

managelocalrepo | Manage a CRAN-Style Local Repository |

MANCIE | Matrix Analysis and Normalization by Concordant Information Enhancement |

mangoTraining | Mango Solutions Training Datasets |

manifestoR | Access and Process Data and Documents of the Manifesto Project |

manipulate | Interactive Plots for RStudio |

ManlyMix | Manly Mixture Modeling and Model-Based Clustering |

ManyTests | Multiple testing procedures of Cox (2011) and Wang and Cox (2007) |

Map2NCBI | Mapping Markers to the Nearest Genomic Feature |

MAPA | Multiple Aggregation Prediction Algorithm |

mapdata | Extra Map Databases |

mapfit | A Tool for PH/MAP Parameter Estimation |

MapGAM | Mapping Smoothed Effect Estimates from Individual-Level Data |

MAPLES | Smoothed age profile estimation |

mapmisc | Utilities for Producing Maps |

mapplots | Data Visualisation on Maps |

mapproj | Map Projections |

mapr | 'Visualize' Species Occurrence Data |

maps | Draw Geographical Maps |

mapStats | Geographic Display of Survey Data Statistics |

maptools | Tools for Reading and Handling Spatial Objects |

maptpx | MAP Estimation of Topic Models |

maptree | Mapping, pruning, and graphing tree models |

mapview | Interactive Viewing of Spatial Objects in R |

mAr | Multivariate AutoRegressive analysis |

MAR1 | Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data |

mar1s | Multiplicative AR(1) with Seasonal Processes |

march | Markov Chains |

marelac | Tools for Aquatic Sciences |

MareyMap | Estimation of Meiotic Recombination Rates Using Marey Maps |

marg | Approximate marginal inference for regression-scale models |

marima | Multivariate ARIMA and ARIMA-X Analysis |

markdown | 'Markdown' Rendering for R |

marked | Mark-Recapture Analysis for Survival and Abundance Estimation |

maRketSim | Market simulator for R |

markmyassignment | Automatic Marking of R Assignments |

markophylo | Markov Chain Models for Phylogenetic Trees |

markovchain | Easy Handling Discrete Time Markov Chains |

MarkowitzR | Statistical Significance of the Markowitz Portfolio |

marl | Multivariate Analysis Based on Relative Likelihoods |

marmap | Import, Plot and Analyze Bathymetric and Topographic Data |

marqLevAlg | An algorithm for least-squares curve fitting |

MARSS | Multivariate Autoregressive State-Space Modeling |

maSAE | Mandallaz' Model-Assisted Small Area Estimators |

MASS | Support Functions and Datasets for Venables and Ripley's MASS |

MASSTIMATE | Body Mass Estimation Equations for Vertebrates |

MasterBayes | ML and MCMC Methods for Pedigree Reconstruction and Analysis |

MAT | Multidimensional Adaptive Testing |

MATA | Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval |

Matching | Multivariate and Propensity Score Matching with Balance Optimization |

MatchingFrontier | Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference |

matchingMarkets | Analysis of Stable Matchings |

matchingR | Matching Algorithms in R and C++ |

MatchIt | MatchIt: Nonparametric Preprocessing for Parametric Casual Inference |

MatchLinReg | Combining Matching and Linear Regression for Causal Inference |

matchMulti | Optimal Multilevel Matching using a Network Algorithm |

matconv | A Code Converter from the Matlab/Octave Language to R |

mateable | Tools to Assess Mating Potential in Space and Time |

mathgraph | Directed and undirected graphs |

matie | Measuring Association and Testing Independence Efficiently |

matlab | MATLAB emulation package |

matlabr | An Interface for MATLAB using System Calls |

matlib | Matrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics |

matpow | matrix powers |

matR | Metagenomics Analysis Tools for R |

Matrix | Sparse and Dense Matrix Classes and Methods |

matrixcalc | Collection of functions for matrix calculations |

MatrixCorrelation | Matrix Correlation Coefficients |

MatrixEQTL | Matrix eQTL: Ultra fast eQTL analysis via large matrix operations |

MatrixModels | Modelling with Sparse And Dense Matrices |

matrixpls | Matrix-Based Partial Least Squares Estimation |

matrixStats | Functions that Apply to Rows and Columns of Matrices (and to Vectors) |

Matrix.utils | Data.frame-Like Operations on Sparse and Dense Matrix Objects |

MATTOOLS | Modern Calibration Functions for the Modern Analog Technique (MAT) |

MAVIS | Meta Analysis via Shiny |

MAVTgsa | Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest |

MaXact | Exact max-type Cochran-Armitage trend test(CATT) |

maxent | Low-memory Multinomial Logistic Regression with Support for Text Classification |

MaxentVariableSelection | Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling |

maxLik | Maximum Likelihood Estimation and Related Tools |

maxlike | Model species distributions by estimating the probability of occurrence using presence-only data |

MaxPro | Maximum Projection Designs |

maxstat | Maximally Selected Rank Statistics |

MazamaSpatialUtils | Mazama Science Spatial Data Download and Utility Functions |

MBA | Multilevel B-spline Approximation |

mbbefd | Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling |

MBCluster.Seq | Model-Based Clustering for RNA-seq Data |

MBESS | The MBESS R Package |

mbest | Moment-Based Estimation for Hierarchical Models |

MBI | (M)ultiple-site (B)iodiversity (I)ndices Calculator |

mblm | Median-Based Linear Models |

MBmca | Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R |

mbmdr | Model Based Multifactor Dimensionality Reduction |

mboost | Model-Based Boosting |

MBTAr | Access Data from the Massachusetts Bay Transit Authority (MBTA) Web API |

mBvs | Multivariate Bayesian Variable Selection Method Exploiting Dependence among Outcomes |

mc2d | Tools for Two-Dimensional Monte-Carlo Simulations |

MC2toPath | Translates information from netcdf files with MC2 output into inter-PVT transitions |

MCAPS | MCAPS data and results |

mcbiopi | Matrix Computation Based Identification Of Prime Implicants |

mcc | Moment Corrected Correlation |

mcclust | Process an MCMC Sample of Clusterings |

MCDA | Functions to Support the Multicriteria Decision Aiding Process |

MCDM | Multi-Criteria Decision Making Methods |

mcemGLM | Maximum Likelihood Estimation for Generalized Linear Mixed Models |

mcga | Machine Coded Genetic Algorithms for Real-Valued Optimization Problems |

mcgibbsit | Warnes and Raftery's MCGibbsit MCMC diagnostic |

mcGlobaloptim | Global optimization using Monte Carlo and Quasi Monte Carlo simulation |

mcheatmaps | Multiple matrices heatmap visualization |

MChtest | Monte Carlo hypothesis tests with Sequential Stopping |

MCI | Multiplicative Competitive Interaction (MCI) Model |

mcIRT | IRT models for multiple choice items (mcIRT) |

MCL | Markov Cluster Algorithm |

mcll | Monte Carlo Local Likelihood Estimation |

mclogit | Mixed Conditional Logit |

mclust | Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation |

mcmc | Markov Chain Monte Carlo |

MCMC4Extremes | Posterior Distribution of Extreme Value Models in R |

MCMCglmm | MCMC Generalised Linear Mixed Models |

MCMC.OTU | Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology |

MCMCpack | Markov Chain Monte Carlo (MCMC) Package |

mcmcplots | Create Plots from MCMC Output |

MCMC.qpcr | Bayesian Analysis of qRT-PCR Data |

mcmcse | Monte Carlo Standard Errors for MCMC |

mco | Multiple Criteria Optimization Algorithms and Related Functions |

Mcomp | Data from the M-competitions |

MConjoint | Conjoint Analysis through Averaging of Multiple Analyses |

mcPAFit | Estimating Node Fitness from a Single Network Snapshot by Markov Chain Monte Carlo |

MCPAN | Multiple Comparisons Using Normal Approximation |

mcparallelDo | A Simplified Interface for Running Commands on Parallel Processes |

MCPerm | A Monte Carlo permutation method for multiple test correlation |

MCPMod | Design and Analysis of Dose-Finding Studies (see also DoseFinding package) |

mcprofile | Multiple Contrast Profiles |

mcr | Method Comparison Regression |

MCS | Model Confidence Set Procedure |

mcsm | Functions for Monte Carlo Methods with R |

McSpatial | Nonparametric spatial data analysis |

MCTM | Markov Chains Transition Matrices |

md | Selecting Bandwidth for Kernel Density Estimator with Minimum Distance Method |

mda | Mixture and Flexible Discriminant Analysis |

mdatools | Multivariate Data Analysis for Chemometrics |

mded | Measuring the Difference Between Two Empirical Distributions |

mdhglm | Multivariate Double Hierarchical Generalized Linear Models |

MDimNormn | Multi-Dimensional MA Normalization for Plate Effect |

MDM | Multinomial Diversity Model |

MDMR | Multivariate Distance Matrix Regression |

MDplot | Visualising Molecular Dynamics Analyses |

MDPtoolbox | Markov Decision Processes toolbox |

MDR | Detect gene-gene interactions using multifactor dimensionality reduction |

mdscore | Improved Score Tests for Generalized Linear Models |

mdsdt | Functions for Analysis of Data with General Recognition Theory |

MDSGUI | A GUI for interactive MDS in R |

MeanShift | Clustering via the Mean Shift Algorithm |

measuRing | Detection and Control of Tree-Ring Widths on Scanned Image Sections |

meboot | Maximum Entropy Bootstrap for Time Series |

mederrRank | Bayesian Methods for Identifying the Most Harmful Medication Errors |

medflex | Flexible Mediation Analysis Using Natural Effect Models |

MediaK | Calculate MeDiA_K Distance |

Mediana | Clinical Trial Simulations |

mediation | Causal Mediation Analysis |

medicalrisk | Medical Risk and Comorbidity Tools for ICD-9-CM Data |

MedOr | Median Ordering Statistical R package |

medSTC | A max-margin supervised Sparse Topical Coding Model |

MEET | MEET: Motif Elements Estimation Toolkit |

mefa | Multivariate Data Handling in Ecology and Biogeography |

mefa4 | Multivariate Data Handling with S4 Classes and Sparse Matrices |

megaptera | MEGAPhylogeny Techniques in R |

meifly | Interactive model exploration using GGobi |

mem | Moving Epidemic Method R Package |

memgene | Spatial pattern detection in genetic distance data using Moran's Eigenvector Maps |

memisc | Tools for Management of Survey Data and the Presentation of Analysis Results |

memoise | Memoisation of Functions |

MEMSS | Data sets from Mixed-effects Models in S |

memuse | Memory Estimation Utilities |

MenuCollection | Collection of Configurable GTK+ Menus |

MergeGUI | A GUI for Merging Datasets in R |

merror | Accuracy and Precision of Measurements |

merTools | Tools for Analyzing Mixed Effect Regression Models |

MESS | Miscellaneous Esoteric Statistical Scripts |

meta | General Package for Meta-Analysis |

meta4diag | Meta-Analysis for Diagnostic Test Studies |

MetABEL | Meta-analysis of genome-wide SNP association results |

MetabolAnalyze | Probabilistic latent variable models for metabolomic data |

metabolomics | Analysis of Metabolomics Data |

metacom | Analysis of the 'Elements of Metacommunity Structure' |

metacor | Meta-analysis of correlation coefficients |

MetaCycle | Evaluate Periodicity in Large Scale Data |

MetaDE | MetaDE: Microarray meta-analysis for differentially expressed gene detection |

metafolio | Metapopulation simulations for conserving salmon through portfolio optimization |

metafor | Meta-Analysis Package for R |

metafuse | Fused Lasso Approach in Regression Coefficient Clustering |

metagear | Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis |

metagen | Inference in Meta Analysis and Meta Regression |

metaheur | Metaheuristic Optimization Framework for Preprocessing Combinations |

MetaLandSim | Landscape and Range Expansion Simulation |

metaLik | Likelihood Inference in Meta-Analysis and Meta-Regression Models |

metaMA | Meta-analysis for MicroArrays |

metamisc | Diagnostic and prognostic meta analysis (metamisc) |

metaMix | Bayesian Mixture Analysis for Metagenomic Community Profiling |

metansue | Meta-Analysis of Studies with Non Statistically-Significant Unreported Effects |

metap | Meta-Analysis of Significance Values |

MetaPath | Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE) |

MetaPCA | MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data |

metaplus | Robust Meta-Analysis and Meta-Regression |

MetaQC | MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis |

metaRNASeq | Meta-analysis of RNA-seq data |

metaSEM | Meta-Analysis using Structural Equation Modeling |

metasens | Advanced Statistical Methods to Model and Adjust for Bias in Meta-Analysis |

MetaSKAT | Meta Analysis for SNP-Set (Sequence) Kernel Association Test |

metatest | Fit and test metaregression models |

Metatron | Meta-analysis for Classification Data and Correction to Imperfect Reference |

meteo | Spatio-Temporal Analysis and Mapping of Meteorological Observations |

meteoForecast | Numerical Weather Predictions |

meteogRam | Tools for plotting meteograms |

meteR | Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE) |

MetFns | Analysis of Visual Meteor Data |

Meth27QC | Meth27QC: sample quality analysis, and sample control analysis |

MethComp | Functions for Analysis of Agreement in Method Comparison Studies |

Methplot | Visualize the methylation patterns |

MethylCapSig | Detection of Differentially Methylated Regions using MethylCap-Seq Data |

MetNorm | Statistical Methods for Normalizing Metabolomics Data |

MetProc | Separate Metabolites into Likely Measurement Artifacts and True Metabolites |

Metrics | Evaluation metrics for machine learning |

metricsgraphics | Create Interactive Charts with the JavaScript 'MetricsGraphics' Library |

metricTester | Test Metric and Null Model Statistical Performance |

metRology | Support for metrological applications |

mets | Analysis of Multivariate Event Times |

MetSizeR | GUI Tool for Estimating Sample Sizes for Metabolomic Experiments |

MetStaT | Statistical metabolomics tools |

mev | Multivariate Extreme Value Distributions |

mewAvg | A Fixed Memeory Moving Expanding Window Average |

mexhaz | Mixed Effect Excess Hazard Models |

MExPosition | Multi-table ExPosition |

MF | Mitigated Fraction |

MFAg | Multiple Factor Analysis (MFA) |

MFHD | Multivariate Functional Halfspace Depth |

mFilter | Miscellaneous time series filters |

mfp | Multivariable Fractional Polynomials |

MfUSampler | Multivariate-from-Univariate (MfU) MCMC Sampler |

mfx | Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs |

mgarchBEKK | Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR) Processes |

mgcv | Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness Estimation |

MGGM | Structural Pursuit Over Multiple Undirected Graphs |

MGLM | Multivariate Response Generalized Linear Models |

mglmn | Model Averaging for Multivariate GLM with Null Models |

mgm | Estimating Time-Varying Mixed Graphical Models |

mgpd | mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II) |

mgraph | Graphing map attributes and non-map variables in R |

MGRASTer | API Client for the MG-RAST Server of the US DOE KBase |

MGSDA | Multi-Group Sparse Discriminant Analysis |

mGSZ | Gene set analysis based on GSZ-scoring function and asymptotic p-value |

MHadaptive | General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling |

mhde | Minimum Hellinger Distance Test for Normality |

mHG | Minimum-Hypergeometric Test |

mhsmm | Inference for Hidden Markov and Semi-Markov Models |

mht | Multiple Hypothesis Testing for Variable Selection in High-Dimensional Linear Models |

MHTrajectoryR | Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions |

mhurdle | Multiple hurdle Tobit models |

mi | Missing Data Imputation and Model Checking |

mice | Multivariate Imputation by Chained Equations |

miceadds | Some Additional Multiple Imputation Functions, Especially for 'mice' |

micEcon | Microeconomic Analysis and Modelling |

micEconAids | Demand Analysis with the Almost Ideal Demand System (AIDS) |

micEconCES | Analysis with the Constant Elasticity of Substitution (CES) function |

micEconSNQP | Symmetric Normalized Quadratic Profit Function |

micompr | Multivariate Independent Comparison of Observations |

miCoPTCM | Promotion Time Cure Model with Mis-Measured Covariates |

microbats | An Implementation of Bat Algorithm in R |

microbenchmark | Accurate Timing Functions |

MicroDatosEs | Utilities for Official Spanish Microdata |

micromap | Linked Micromap Plots |

micromapST | Linked Micromap Plots for U. S. States |

micropan | Microbial Pan-genome Analysis |

MicroStrategyR | MicroStrategyR Package |

MicSim | Performing Continuous-Time Microsimulation |

midasr | Mixed Data Sampling Regression |

midastouch | Multiple Imputation by Distance Aided Donor Selection |

midrangeMCP | Multiple Comparisons Procedures Based on Studentized Midrange and Range Distributions |

MigClim | Implementing dispersal into species distribution models |

migest | Methods for the Indirect Estimation of Bilateral Migration |

migration.indices | Migration indices |

migui | Graphical User Interface to the 'mi' Package |

MIICD | Multiple Imputation for Interval Censored Data |

MIIVsem | Model Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models |

MILC | MIcrosimulation Lung Cancer (MILC) model |

milonga | Multiple Imputation for Multivariate Binary Outcome |

mime | Map Filenames to MIME Types |

MImix | Mixture summary method for multiple imputation |

MindOnStats | Data sets included in Utts and Heckard's Mind on Statistics |

minerva | Maximal Information-Based Nonparametric Exploration R Package for Variable Analysis |

Miney | Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix) |

miniCRAN | Create a Mini Version of CRAN Containing Only Selected Packages |

miniGUI | tktcl quick and simple function GUI |

minimap | Create Tile Grid Maps |

minimax | Minimax distribution family |

minimaxdesign | Minimax and Minimax Projection Designs |

minimist | Parse Argument Options |

miniUI | Shiny UI Widgets for Small Screens |

minpack.lm | R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for Bounds |

minPtest | Gene region-level testing procedure for SNP data, using the min P test resampling approach |

minqa | Derivative-free optimization algorithms by quadratic approximation |

minque | An R Package for Linear Mixed Model Analyses |

MInt | Learn Direct Interaction Networks |

minval | MINimal VALidation for Stoichiometric Reactions |

minxent | Entropy Optimization Distributions |

mipfp | Multidimensional Iterative Proportional Fitting and Alternative Models |

MIPHENO | Mutant Identification through Probabilistic High throughput Enabled NOrmalization |

miRada | MicroRNA Microarray Data Analysis |

MiRSEA | 'MicroRNA' Set Enrichment Analysis |

mirt | Multidimensional Item Response Theory |

mirtCAT | Computerized Adaptive Testing with Multidimensional Item Response Theory |

miRtest | combined miRNA- and mRNA-testing |

misc3d | Miscellaneous 3D Plots |

miscF | Miscellaneous Functions |

miscFuncs | Miscellaneous Useful Functions |

miscset | Miscellaneous Tools Set |

miscTools | Miscellaneous Tools and Utilities |

MiSPU | Microbiome Based Sum of Powered Score (MiSPU) Tests |

missDeaths | 'Correctly Analyse Disease Recurrence with Missing at Risk Information using Population Mortality' |

missForest | Nonparametric Missing Value Imputation using Random Forest |

MissingDataGUI | A GUI for Missing Data Exploration |

missMDA | Handling Missing Values with Multivariate Data Analysis |

MissMech | Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random |

MiST | Mixed effects Score Test for continuous outcomes |

mistat | Data Sets, Functions and Examples from the Book: "Modern Industrial Statistics" by Kenett, Zacks and Amberti |

mistral | Methods in Structural Reliability Analysis |

MitISEM | Mixture of Student t Distributions using Importance Sampling and Expectation Maximization |

mitml | Tools for Multiple Imputation in Multilevel Modeling |

mitools | Tools for multiple imputation of missing data |

mix | Estimation/Multiple Imputation for Mixed Categorical and Continuous Data |

mixAK | Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering |

MixAll | Clustering using Mixture Models |

mixcat | Mixed effects cumulative link and logistic regression models |

mixdist | Finite Mixture Distribution Models |

MixedDataImpute | Missing Data Imputation for Continuous and Categorical Data using Nonparametric Bayesian Joint Models |

mixedMem | Tools for Discrete Multivariate Mixed Membership Models |

MixedPoisson | Mixed Poisson Models |

mixedsde | Estimation Methods for Stochastic Differential Mixed Effects Models |

MixedTS | Mixed Tempered Stable Distribution |

mixer | Random graph clustering |

mixexp | Design and Analysis of Mixture Experiments |

MIXFIM | Evaluation of the FIM in NLMEMs using MCMC |

MixGHD | Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions |

mixlm | Mixed Model ANOVA and Statistics for Education |

MixMAP | Implements the MixMAP Algorithm |

mixOmics | Omics Data Integration Project |

mixor | Mixed-Effects Ordinal Regression Analysis |

mixpack | Tools to Work with Mixture Components |

mixPHM | Mixtures of Proportional Hazard Models |

mixRasch | Mixture Rasch Models with JMLE |

mixreg | Functions to fit mixtures of regressions |

MixRF | A Random-Forest-Based Approach for Imputing Clustered Incomplete Data |

mixsep | Forensic Genetics DNA Mixture Separation |

MixSim | Simulating Data to Study Performance of Clustering Algorithms |

mixsmsn | Fitting Finite Mixture of Scale Mixture of Skew-Normal Distributions |

mixtNB | DE Analysis of RNA-Seq Data by Mixtures of NB |

mixtools | Tools for Analyzing Finite Mixture Models |

mixtox | Curve Fitting and Mixture Toxicity Assessment |

mixture | Mixture Models for Clustering and Classification |

MixtureInf | Inference for Finite Mixture Models |

mizer | Multi-species sIZE spectrum modelling in R |

mkde | 2D and 3D movement-based kernel density estimates (MKDEs) |

mkin | Routines for Fitting Kinetic Models with One or More State Variables to Chemical Degradation Data |

MKLE | Maximum kernel likelihood estimation |

MKmisc | Miscellaneous Functions from M. Kohl |

mkssd | Efficient multi-level k-circulant supersaturated designs |

mlbench | Machine Learning Benchmark Problems |

MLCIRTwithin | Latent Class Item Response Theory (LC-IRT) Models under Within-Item Multidimensionality |

MLCM | Maximum Likelihood Conjoint Measurement |

mlDNA | Machine Learning-based Differential Network Analysis of Transcriptome Data |

mldr | Exploratory Data Analysis and Manipulation of Multi-Label Data Sets |

mldr.datasets | R Ultimate Multilabel Dataset Repository |

MLDS | Maximum Likelihood Difference Scaling |

mlearning | Machine learning algorithms with unified interface and confusion matrices |

MLEcens | Computation of the MLE for bivariate (interval) censored data |

mlegp | Maximum Likelihood Estimates of Gaussian Processes |

mleur | Maximum likelihood unit root test |

mlgt | Multi-Locus Geno-Typing |

mlica2 | Independent Component Analysis using Maximum Likelihood |

mlma | Multilevel Mediation Analysis |

mlmc | Multi-Level Monte Carlo |

MLmetrics | Machine Learning Evaluation Metrics |

mlmmm | ML estimation under multivariate linear mixed models with missing values |

mlmRev | Examples from Multilevel Modelling Software Review |

mlogit | multinomial logit model |

mlogitBMA | Bayesian Model Averaging for Multinomial Logit Models |

mlPhaser | Multi-Locus Haplotype Phasing |

mlr | Machine Learning in R |

MLRMPA | A package for Multilinear Regression Model Population Analysis |

mlsjunkgen | Use the MLS Junk Generator Algorithm to Generate a Stream of Pseudo-Random Numbers |

mlt | Most Likely Transformations |

mlt.docreg | Most Likely Transformations: Documentation and Regression Tests |

mlVAR | Multi-Level Vector Autoregression |

mlxR | Simulation of Longitudinal Data |

MM | The multiplicative multinomial distribution |

MM2S | Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines |

MM2Sdata | Gene Expression Datasets for the 'MM2S' Package |

mma | Multiple Mediation Analysis |

mmand | Mathematical Morphology in Any Number of Dimensions |

mmap | Map Pages of Memory |

mmc | Multivariate Measurement Error Correction |

mmcm | Modified Maximum Contrast Method |

mmds | Mixture Model Distance Sampling (mmds) |

mme | Multinomial Mixed Effects Models |

mmeln | Estimation of Multinormal Mixture Distribution |

mmeta | Multivariate Meta-Analysis |

mmm | an R package for analyzing multivariate longitudinal data with multivariate marginal models |

mmm2 | Multivariate marginal models with shared regression parameters |

MMMS | Multi-Marker Molecular Signature for Treatment-specific Subgroup Identification |

mmod | Modern Measures of Population Differentiation |

mmpp | Various Similarity and Distance Metrics for Marked Point Processes |

mmppr | Markov Modulated Poisson Process for Unsupervised Event Detection in Time Series of Counts |

MMS | Fixed effects Selection in Linear Mixed Models |

mmtfa | Model-Based Clustering and Classification with Mixtures of Modified t Factor Analyzers |

MMWRweek | Convert Dates to MMWR Day, Week, and Year |

mnlogit | Multinomial Logit Model |

MNM | Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks |

mnormpow | Multivariate Normal Distributions with Power Integrand |

mnormt | The Multivariate Normal and t Distributions |

MNP | R Package for Fitting the Multinomial Probit Model |

MNS | Mixed Neighbourhood Selection |

Mobilize | Mobilize plots and functions |

MOCCA | Multi-objective optimization for collecting cluster alternatives |

Modalclust | Hierarchical Modal Clustering |

modeest | Mode Estimation |

modehunt | Multiscale Analysis for Density Functions |

modelfree | Model-free estimation of a psychometric function |

ModelGood | Validation of risk prediction models |

modellingTools | A Collection of Useful Custom Tools for D&A and Modelling |

ModelMap | Modeling and Map Production using Random Forest and Stochastic Gradient Boosting |

modelObj | A Model Object Framework for Regression Analysis |

modeltools | Tools and Classes for Statistical Models |

modes | Find the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets |

modiscloud | R tools for processing Level 2 Cloud Mask products from MODIS |

MODISTools | MODIS Subsetting Tools |

modMax | Community Structure Detection via Modularity Maximization |

modQR | Multiple-Output Directional Quantile Regression |

modTempEff | Modelling temperature effects using time series data |

moduleColor | Basic Module Functions |

modules | Self Contained Units of Source Code |

mogavs | Multiobjective Genetic Algorithm for Variable Selection in Regression |

MOJOV | Mojo Variants: Rare Variants analysis |

mokken | Mokken Scale Analysis in R |

molaR | Dental Surface Complexity Measurement Tools |

mombf | Moment and Inverse Moment Bayes Factors |

momentchi2 | Moment-Matching Methods for Weighted Sums of Chi-Squared Random Variables |

moments | Moments, cumulants, skewness, kurtosis and related tests |

Momocs | Morphometrics using R |

momr | Mining Metaomics Data (MetaOMineR) |

mondate | Keep track of dates in terms of months |

Mondrian | A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events |

MonetDBLite | In-Process Version of MonetDB for R |

MonetDB.R | Connect MonetDB to R |

mongolite | Fast and Simple MongoDB Client for R |

monitoR | Acoustic Template Detection in R |

monmlp | Monotone Multi-Layer Perceptron Neural Network |

monogeneaGM | Geometric Morphometric Analysis of Monogenean Anchors |

monographaR | Taxonomic Monographs Tools |

MonoInc | Monotonic Increasing |

monomvn | Estimation for Multivariate Normal and Student-t Data with Monotone Missingness |

MonoPhy | Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny |

MonoPoly | Functions to Fit Monotone Polynomials |

monreg | Nonparametric Monotone Regression |

moonBook | Functions and Datasets for the Book by Keon-Woong Moon |

moonsun | Basic astronomical calculations with R |

mopsocd | MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance |

MOrder | Check Time Homogeneity and Markov Chain Order |

morgenstemning | Color schemes compatible with red-green color perception difficulties |

Morpho | Calculations and Visualisations Related to Geometric Morphometrics |

morse | MOdelling Tools for Reproduction and Survival Data in Ecotoxicology |

MorseGen | Simple raw data generator based on user-specified summary statistics |

MortalitySmooth | Smoothing and Forecasting Poisson Counts with P-Splines |

mosaic | Project MOSAIC Statistics and Mathematics Teaching Utilities |

mosaicData | Project MOSAIC (mosaic-web.org) data sets |

MoTBFs | Learning Hybrid Bayesian Networks using Mixtures of Truncated Basis Functions |

MotilityLab | Quantitative Analysis of Motion |

moult | Models for Analysing Moult in Birds |

mountainplot | Mountain Plots, Folded Empirical Cumulative Distribution Plots |

mousetrack | Mouse-Tracking Measures from Trajectory Data |

mousetrap | Process and Analyze Mouse-Tracking Data |

move | Visualizing and Analyzing Animal Track Data |

moveHMM | Animal Movement Modelling using Hidden Markov Models |

movMF | Mixtures of von Mises-Fisher Distributions |

mp | Multidimensional Projection Techniques |

mpa | CoWords Method |

MPAgenomics | Multi-Patient Analysis of Genomic Markers |

mpath | Regularized Linear Models |

mpbart | Multinomial Probit Bayesian Additive Regression Trees |

MPCI | Multivariate Process Capability Indices (MPCI) |

mpcv | Multivariate Process Capability Vector |

MPDiR | Data sets and scripts for Modeling Psychophysical Data in R |

mph | Multiscale persistent homology |

MPINet | The package can implement the network-based metabolite pathway identification of pathways |

MPLikelihoodWB | Modified Profile Likelihood Estimation for Weibull Shape and Regression Parameters |

mplot | Graphical Model Stability and Variable Selection Procedures |

MplusAutomation | Automating Mplus Model Estimation and Interpretation |

mpm | Multivariate Projection Methods |

mpMap | Multi-parent RIL genetic analysis |

mpmcorrelogram | Multivariate Partial Mantel Correlogram |

mpmi | Mixed-pair mutual information estimators |

mpoly | Symbolic Computation and More with Multivariate Polynomials |

Mposterior | Mposterior: R package for Robust and Scalable Bayes via a Median of Subset Posterior Measures |

mppa | Statistics for analysing multiple simultaneous point processes on the real line |

MPSEM | Modeling Phylogenetic Signals using Eigenvector Maps |

mpt | Multinomial Processing Tree Models |

MPTinR | Analyze Multinomial Processing Tree Models |

mptools | RAMAS Metapop Tools |

MPV | Data Sets from Montgomery, Peck and Vining's Book |

mQTL | Metabolomic Quantitative Trait Locus Mapping |

mra | Analysis of Mark-Recapture Data |

mratios | Inferences for ratios of coefficients in the general linear model |

MRCE | Multivariate regression with covariance estimation |

MRCV | Methods for Analyzing Multiple Response Categorical Variables (MRCVs) |

mrds | Mark-Recapture Distance Sampling |

mreg | Fits regression models when the outcome is partially missing |

MRH | Multi-Resolution Estimation of the Hazard Rate |

mri | Modified Rand Index (1 and 2.1 and 2.2) and Modified Adjusted Rand Index (1 and 2.1 and 2.2) |

MRIaggr | Management, Display, and Processing of Medical Imaging Data |

mritc | MRI Tissue Classification |

mRm | An R package for conditional maximum likelihood estimation in mixed Rasch models |

mrMLM | Multilocus Random Mixed Linear Model for Genome-Wide Association Study |

MRMR | Multivariate Regression Models for Reserving |

mRMRe | R package for parallelized mRMR ensemble feature selection |

MRQoL | Minimal Clinically Important Difference and Response Shift Effect for Health-Related Quality of Life |

MRS | Multi-Resolution Scanning for Cross-Sample Differences |

MRSP | Multinomial Response Models with Structured Penalties |

MRsurv | A multiplicative-regression model for relative survival |

MRwarping | Multiresolution time warping for functional data |

msap | Statistical analysis for Methylation-sensitive Amplification Polymorphism data |

msarc | Draw Diagrams (mis)Representing the Results of Mass Spec Experiments |

msBP | Multiscale Bernstein Polynomials for Densities |

MSBVAR | Markov-Switching, Bayesian, Vector Autoregression Models |

MScombine | Combine Data from Positive and Negative Ionization Mode Finding Common Entities |

mscsweblm4r | R Client for the Microsoft Cognitive Services Web Language Model REST API |

msda | Multi-Class Sparse Discriminant Analysis |

mseapca | Metabolite set enrichment analysis for factor loading in principal component analysis |

MSeasy | Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data |

MSeasyTkGUI | MSeasy Tcl/Tk Graphical User Interface |

MSG | Data and Functions for the Book Modern Statistical Graphics |

msgl | High Dimensional Multiclass Classification Using Sparse Group Lasso |

msgpackR | A library to serialize or unserialize data in MessagePack format |

msgps | Degrees of freedom of elastic net, adaptive lasso and generalized elastic net |

msir | Model-Based Sliced Inverse Regression |

MSIseq | Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations |

msltrend | Improved Techniques to Estimate Trend, Velocity and Acceleration from Sea Level Records |

msm | Multi-State Markov and Hidden Markov Models in Continuous Time |

msma | Multiblock Sparse Multivariable Analysis |

msme | Functions and Datasets for "Methods of Statistical Model Estimation" |

msmtools | Building Augmented Data to Run Multi-State Models with 'msm' Package |

msos | Datasets and Functions used in Multivariate Statistics: Old School by John Marden |

MSQC | Multivariate Statistical Quality Control |

msr | Morse-Smale Approximation, Regression and Visualization |

ms.sev | Package for Calculation of ARMSS, Local MSSS and Global MSSS |

msSurv | Nonparametric Estimation for Multistate Models |

MST | Multivariate Survival Trees |

mstate | Data Preparation, Estimation and Prediction in Multi-State Models |

MSwM | Fitting Markov Switching Models |

mtconnectR | Read Data from Delimited MTConnect Data Files |

mtk | Mexico ToolKit library (MTK) |

MTS | All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models |

mtsdi | Multivariate time series data imputation |

MTurkR | R Client for the MTurk Requester API |

MTurkRGUI | A Graphical User Interface for MTurkR |

MUCflights | Munich Franz-Josef-Strauss Airport Pattern Analysis |

MuFiCokriging | Multi-Fidelity Cokriging models |

muhaz | Hazard Function Estimation in Survival Analysis |

muir | Exploring Data with Tree Data Structures |

MultAlloc | Optimal Allocation in Stratified Sampling |

multcomp | Simultaneous Inference in General Parametric Models |

multcompView | Visualizations of Paired Comparisons |

MultEq | Multiple Equivalence Tests and Simultaneous Confidence Intervals |

multgee | GEE Solver for Correlated Nominal or Ordinal Multinomial Responses |

multiAssetOptions | Finite Difference Method for Multi-Asset Option Valuation |

multiband | Period Estimation for Multiple Bands |

multibiplotGUI | Multibiplot Analysis in R |

multic | Quantitative Linkage Analysis Tools using the Variance Components Approach |

MultiCNVDetect | Multiple Copy Number Variation Detection |

multicon | Multivariate Constructs |

multicool | Permutations of Multisets in Cool-Lex Order |

multifwf | Read Fixed Width Format Files Containing Lines of Different Type |

multigroup | Multigroup Data Analysis |

MultiLCIRT | Multidimensional Latent Class Item Response Theory Models |

multilevel | Multilevel Functions |

multilevelPSA | Multilevel Propensity Score Analysis |

multimark | Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks |

MultiMeta | Meta-analysis of Multivariate Genome Wide Association Studies |

multinbmod | Regression analysis of overdispersed correlated count data |

MultinomialCI | Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz |

multinomRob | Robust Estimation of Overdispersed Multinomial Regression Models |

MultiOrd | Generation of Multivariate Ordinal Variates |

MultiPhen | A Package to Test for Pleiotropic Effects |

multiPIM | Variable Importance Analysis with Population Intervention Models |

multipleNCC | Weighted Cox-Regression for Nested Case-Control Data |

multiplex | Algebraic Tools for the Analysis of Multiple Social Networks |

multiplyr | Data Manipulation with Parallelism and Shared Memory Matrices |

multipol | multivariate polynomials |

multirich | Calculate Multivariate Richness via UTC and sUTC |

MultiRR | Bias, Precision, and Power for Multi-Level Random Regressions |

multisensi | Multivariate Sensitivity Analysis |

multisom | Clustering a Dataset using Multi-SOM Algorithm |

multispatialCCM | Multispatial Convergent Cross Mapping |

MultiSV | MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing |

multitaper | Multitaper Spectral Analysis Tools |

MultivariateRandomForest | Multivariate Random Forest for Linearly Related Output Features |

multivator | A multivariate emulator |

multiwave | Estimation of Multivariate Long-Memory Models Parameters |

multiway | Component Models for Multi-Way Data |

multiwayvcov | Multi-Way Standard Error Clustering |

MultNonParam | Multivariate Nonparametric Methods |

multxpert | Common Multiple Testing Procedures and Gatekeeping Procedures |

muma | Metabolomics Univariate and Multivariate Analysis |

MuMIn | Multi-Model Inference |

munfold | Metric Unfolding |

munsell | Utilities for Using Munsell Colours |

munsellinterpol | Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB |

muRL | Mailmerge using R, LaTeX, and the Web |

murphydiagram | Murphy Diagrams for Forecast Comparisons |

musicNMR | Conversion of Nuclear Magnetic Resonance spectrum in audio file |

muStat | Prentice Rank Sum Test and McNemar Test |

mutoss | Unified Multiple Testing Procedures |

mutossGUI | A Graphical User Interface for the MuToss Project |

MuViCP | MultiClass Visualizable Classification using Combination of Projections |

MVA | An Introduction to Applied Multivariate Analysis with R |

mvabund | Statistical Methods for Analysing Multivariate Abundance Data |

MVar.pt | Analise multivariada (brazilian portuguese) |

MVB | Mutivariate Bernoulli log-linear model |

MvBinary | Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution |

mvbutils | Workspace organization, code and documentation editing, package prep and editing, etc |

mvc | Multi-View Clustering |

mvcluster | Multi-View Clustering |

mvctm | Multivariate Variance Components Tests for Multilevel Data |

mvcwt | Wavelet analysis of multiple time series |

mvdalab | Multivariate Data Analysis Laboratory |

mvglmmRank | Multivariate Generalized Linear Mixed Models for Ranking Sports Teams |

mvinfluence | Influence Measures and Diagnostic Plots for Multivariate Linear Models |

mvmesh | Multivariate Meshes and Histograms in Arbitrary Dimensions |

mvmeta | Multivariate and Univariate Meta-Analysis and Meta-Regression |

mvMORPH | Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data |

MVN | Multivariate Normality Tests |

mvna | Nelson-Aalen estimator of the cumulative hazard in multistate models |

mvnfast | Fast Multivariate Normal Methods |

mvngGrAd | Moving Grid Adjustment in Plant Breeding Field Trials |

mvnmle | ML estimation for multivariate normal data with missing values |

mvnormtest | Normality test for multivariate variables |

mvnpermute | Generate New Multivariate Normal Samples from Permutations |

mvnTest | Goodness of Fit Tests for Multivariate Normality |

mvoutlier | Multivariate outlier detection based on robust methods |

mvProbit | Multivariate Probit Models |

mvprpb | Orthant Probability of the Multivariate Normal Distribution |

mvQuad | Methods for Multivariate Quadrature |

MVR | Mean-Variance Regularization |

mvrtn | Mean and Variance of Truncated Normal Distribution |

mvsf | Shapiro-Francia Multivariate Normality Test |

mvShapiroTest | Generalized Shapiro-Wilk test for multivariate normality |

mvSLOUCH | Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses |

MVT | Estimation and Testing for the Multivariate t-Distribution |

mvtmeta | Multivariate meta-analysis |

mvtnorm | Multivariate Normal and t Distributions |

mvtsplot | Multivariate Time Series Plot |

mwa | Causal Inference in Spatiotemporal Event Data |

mwaved | Multichannel Wavelet Deconvolution with Additive Long Memory Noise |

mxkssd | Efficient mixed-level k-circulant supersaturated designs |

MXM | Discovering Multiple, Statistically-Equivalent Signatures |

mycobacrvR | Integrative immunoinformatics for Mycobacterial diseases in R platform |

mycor | Automatic Correlation and Regression Test in a Data Frame |

myepisodes | MyEpisodes RSS/API functions |

Myrrix | Interface to Myrrix. Myrrix is a complete, real-time, scalable clustering and recommender system, evolved from Apache Mahout |

Myrrixjars | External jars required for package Myrrix |

myTAI | Perform Evolutionary Transcriptomics Studies |

mztwinreg | Regression Models for Monozygotic Twin Data |

nabor | Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions |

NADA | Nondetects And Data Analysis for environmental data |

nadiv | (Non)Additive Genetic Relatedness Matrices |

NAEPprimer | The NAEP Primer |

NAM | Nested Association Mapping Analysis |

namespace | Provide namespace managment functions not (yet) present in base R |

nanop | Tools for Nanoparticle Simulation and Calculation of PDF and Total Scattering Structure Function |

NanoStringNorm | Normalize NanoString miRNA and mRNA Data |

NAPPA | Performs the Processing and Normalisation of Nanostring miRNA and mRNA Data |

nasadata | Interface to Various NASA API's |

nasaweather | Collection of datasets from the ASA 2006 data expo |

nat | NeuroAnatomy Toolbox for Analysis of 3D Image Data |

nat.nblast | NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering |

nat.templatebrains | NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains |

naturalsort | Natural Ordering |

nat.utils | File System Utility Functions for 'NeuroAnatomy Toolbox' |

NB | Maximum Likelihood method in estimating effective population size from genetic data |

NbClust | Determining the Best Number of Clusters in a Data Set |

nbconvertR | Vignette Engine Wrapping IPython Notebooks |

NBDdirichlet | NBD-Dirichlet Model of Consumer Buying Behavior for Marketing Research |

nbpMatching | Functions for Optimal Non-Bipartite Matching |

NBPSeq | Negative Binomial Models for RNA-Sequencing Data |

NCA | Necessary Condition Analysis |

nCal | Nonlinear Calibration |

ncappc | NCA Calculation and Population PK Model Diagnosis |

ncbit | retrieve and build NBCI taxonomic data |

ncdf4 | Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files |

ncdf4.helpers | Helper functions for use with the ncdf4 package |

ncdf.tools | Easier 'NetCDF' File Handling |

nCDunnett | Noncentral Dunnett's Test Distribution |

ncf | Spatial Nonparametric Covariance Functions |

ncg | Computes the noncentral gamma function |

NCmisc | Miscellaneous Functions for Creating Adaptive Functions and Scripts |

ncvreg | Regularization Paths for SCAD and MCP Penalized Regression Models |

ndl | Naive Discriminative Learning |

ndtv | Network Dynamic Temporal Visualizations |

NEArender | Network Enrichment Analysis |

neariso | Near-Isotonic Regression |

neat | Efficient Network Enrichment Analysis Test |

NeatMap | Non-clustered heatmap alternatives |

needs | Attaches and Installs Packages |

needy | needy |

NEff | Calculating Effective Sizes Based on Known Demographic Parameters of a Population |

negenes | Estimating the Number of Essential Genes in a Genome |

neldermead | R port of the Scilab neldermead module |

neotoma | Access to the Neotoma Paleoecological Database Through R |

nephro | Biostatistics Utilities for Nephrology |

NEpiC | Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals |

NestedCohort | Survival Analysis for Cohorts with Missing Covariate Information |

nestedRanksTest | Mann-Whitney-Wilcoxon Test for Nested Ranks |

netassoc | Inference of Species Associations from Co-Occurrence Data |

netClass | netClass: An R Package for Network-Based Biomarker Discovery |

NetCluster | Clustering for networks |

netcoh | Statistical Modeling with Network Cohesion |

NetComp | Network Generation and Comparison |

NetData | Network Data for McFarland's SNA R labs |

netdiffuseR | Network Analysis for Diffusion of Innovations |

netgen | Network Generator for Combinatorial Graph Problems |

netgsa | Network-Based Gene Set Analysis |

NetIndices | Estimating network indices, including trophic structure of foodwebs in R |

netmeta | Network Meta-Analysis using Frequentist Methods |

NetPreProc | Network Pre-Processing and Normalization |

nets | Network Estimation for Time Series |

NetSim | A Social Networks Simulation Tool in R |

NetSwan | Network Strengths and Weaknesses Analysis |

nettools | A Network Comparison Framework |

network | Classes for Relational Data |

networkD3 | D3 JavaScript Network Graphs from R |

networkDynamic | Dynamic Extensions for Network Objects |

networkDynamicData | Dynamic (Longitudinal) Network Datasets |

networkreporting | Tools for using Network Reporting Estimators |

networksis | Simulate Bipartite Graphs with Fixed Marginals Through Sequential Importance Sampling |

networkTomography | Tools for network tomography |

neural | Neural Networks |

neuralnet | Training of neural networks |

NeuralNetTools | Visualization and Analysis Tools for Neural Networks |

neuroblastoma | Neuroblastoma copy number profiles |

neuroim | Data Structures and Handling for Neuroimaging Data |

neuRosim | Functions to Generate fMRI Data Including Activated Data, Noise Data and Resting State Data |

Newdistns | Computes Pdf, Cdf, Quantile and Random Numbers, Measures of Inference for 19 General Families of Distributions |

nFactors | Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test |

nFCA | Numerical Formal Concept Analysis for Systematic Clustering |

ngram | Fast n-Gram 'Tokenization' |

ngramrr | A Simple General Purpose N-Gram Tokenizer |

ngspatial | Fitting the centered autologistic and sparse spatial generalized linear mixed models for areal data |

NHANES | Data from the US National Health and Nutrition Examination Study |

nhanesA | NHANES Data Retrieval |

NHEMOtree | Non-hierarchical evolutionary multi-objective tree learner to perform cost-sensitive classification |

nhlscrapr | Compiling the NHL Real Time Scoring System Database for easy use in R |

NHMM | Bayesian NHMM Modeling (Multiple Time Series) |

NHMSAR | Non-Homogeneous Markov Switching Autoregressive Models |

NHPoisson | Modelling and Validation of Non Homogeneous Poisson Processes |

nice | Get or Set UNIX Niceness |

nicheROVER | (Niche) (R)egion and Niche (Over)lap Metrics for Multidimensional Ecological Niches |

NightDay | Night and Day Boundary Plot Funtion |

nima | Nima Hejazi's Miscellaneous R Code |

Nippon | Japanese Utility Functions and Data |

NIPTeR | Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing |

NISTnls | Nonlinear least squares examples from NIST |

NISTunits | Fundamental Physical Constants and Unit Conversions from NIST |

nivm | Noninferiority Tests with Variable Margins |

NlcOptim | Solve Nonlinear Optimization with Nonlinear Constraints |

nleqslv | Solve Systems of Nonlinear Equations |

nlme | Linear and Nonlinear Mixed Effects Models |

nlmeODE | Non-linear mixed-effects modelling in nlme using differential equations |

nlmeU | Datasets and utility functions enhancing functionality of nlme package |

nlmrt | Functions for Nonlinear Least Squares Solutions |

nlnet | Nonlinear Network Reconstruction and Clustering Based on DCOL (Distance Based on Conditional Ordered List) |

nloptr | R interface to NLopt |

NLP | Natural Language Processing Infrastructure |

NLPutils | Natural Language Processing Utilities |

nlreg | Higher Order Inference for Nonlinear Heteroscedastic Models |

NLRoot | searching for the root of equation |

nlrr | Non-Linear Relative Risk Estimation and Plotting |

nls2 | Non-linear regression with brute force |

nlsem | Fitting Structural Equation Mixture Models |

nlshrink | Non-Linear Shrinkage Estimation of Population Eigenvalues and Covariance Matrices |

nlsMicrobio | Nonlinear regression in predictive microbiology |

nlsmsn | Fitting nonlinear models with scale mixture of skew-normal distributions |

nlstools | Tools for Nonlinear Regression Analysis |

NlsyLinks | Utilities and Kinship Information for Research with the NLSY |

nlt | A nondecimated lifting transform for signal denoising |

nlts | (non)linear time series analysis |

nLTT | Calculate the NLTT Statistic |

nlWaldTest | Wald Test of Nonlinear Restrictions and Nonlinear CI |

nmcdr | Non-parametric Multiple Change-points Detection |

NMF | Algorithms and Framework for Nonnegative Matrix Factorization (NMF) |

nmfgpu4R | Non-Negative Matrix Factorization (NMF) using CUDA |

NMFN | Non-negative Matrix Factorization |

NMOF | Numerical Methods and Optimization in Finance |

nnet | Feed-Forward Neural Networks and Multinomial Log-Linear Models |

nnetpredint | Prediction Intervals of Multi-Layer Neural Networks |

nnlasso | Non-Negative Lasso and Elastic Net Penalized Generalized Linear Models |

NNLM | Fast and Versatile Non-Negative Matrix Factorization |

nnls | The Lawson-Hanson algorithm for non-negative least squares (NNLS) |

NNS | Nonlinear Nonparametric Statistics |

NNTbiomarker | Calculate Design Parameters for Biomarker Validation Studies |

nodeHarvest | Node Harvest for Regression and Classification |

nodiv | Compares the Distribution of Sister Clades Through a Phylogeny |

noia | Implementation of the Natural and Orthogonal InterAction (NOIA) model |

nomclust | Hierarchical Nominal Clustering Package |

NominalLogisticBiplot | Biplot representations of categorical data |

noncensus | U.S. Census Regional and Demographic Data |

noncompliance | Causal Inference in the Presence of Treatment Noncompliance Under the Binary Instrumental Variable Model |

nonlinearTseries | Nonlinear Time Series Analysis |

nonmem2R | Loading NONMEM Output Files and Simulate with Parameter Uncertainty |

nonnest2 | Tests of Non-Nested Models |

nonparaeff | Nonparametric Methods for Measuring Efficiency and Productivity |

NonpModelCheck | Model Checking and Variable Selection in Nonparametric Regression |

nonrandom | Stratification and matching by the propensity score |

nontarget | Detecting Isotope, Adduct and Homologue Relations in LC-MS Data |

nontargetData | Quantized simulation data of isotope pattern centroids |

nopp | Nash Optimal Party Positions |

nor1mix | Normal (1-d) Mixture Models (S3 Classes and Methods) |

nordklimdata1 | Dataset for Climate Analysis with Data from the Nordic Region |

norm | Analysis of multivariate normal datasets with missing values |

norm2 | Analysis of Incomplete Multivariate Data under a Normal Model |

NormalGamma | Normal-gamma convolution model |

NormalLaplace | The Normal Laplace Distribution |

normalp | Routines for Exponential Power Distribution |

NormPsy | Normalisation of Psychometric Tests |

NORMT3 | Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t |

normtest | Tests for Normality |

normwhn.test | Normality and White Noise Testing |

NORRRM | Geochemical Toolkit for R |

NORTARA | Generation of Multivariate Data with Arbitrary Marginals |

nortest | Tests for Normality |

nortestARMA | Neyman Smooth Tests of Normality for the Errors of ARMA Models |

nose | nose Package for R |

NostalgiR | Advanced Text-Based Plots |

notifyR | Send push notifications to your smartphone via pushover.net (ACCOUNT REQUIRED!) |

novelist | NOVEL Integration of the Sample and Thresholded (NOVELIST) Correlation and Covariance Estimators |

noweb | Noweb system for R |

Nozzle.R1 | Nozzle Reports |

np | Nonparametric kernel smoothing methods for mixed data types |

nparACT | Non-Parametric Measures of Actigraphy Data |

nparcomp | Multiple Comparisons and Simultaneous Confidence Intervals |

nparLD | Nonparametric Analysis of Longitudinal Data in Factorial Experiments |

NPBayesImpute | Non-Parametric Bayesian Multiple Imputation for Categorical Data |

npbr | Nonparametric Boundary Regression |

NPC | Nonparametric Combination of Hypothesis Tests |

NPCD | Nonparametric Methods for Cognitive Diagnosis |

NPCirc | Nonparametric Circular Methods |

npcp | Some Nonparametric Tests for Change-Point Detection in Possibly Multivariate Observations |

npde | Normalised prediction distribution errors for nonlinear mixed-effect models |

NPflow | Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data |

NPHMC | Sample Size Calculation for the Proportional Hazards Mixture Cure Model |

npIntFactRep | Nonparametric Interaction Tests for Factorial Designs with Repeated Measures |

nplplot | Plotting linkage and association results |

nplr | N-Parameter Logistic Regression |

NPMLEcmprsk | Type-Specific Failure Rate and Hazard Rate on Competing Risks Data |

npmlreg | Nonparametric maximum likelihood estimation for random effect models |

NPMPM | tertiary probabilistic model in predictive microbiology for use in food manufacture |

npmr | Nuclear Penalized Multinomial Regression |

npmv | Nonparametric Comparison of Multivariate Samples |

NPMVCP | Nonparametric Multivariate Change Point Model |

nppbib | Nonparametric Partially-Balanced Incomplete Block Design Analysis |

npregfast | Nonparametric Estimation of Regression Models with Factor-by-Curve Interactions |

nproc | Neyman-Pearson Receiver Operator Curve |

NPS | Convenience Functions and Tests for Working With the Net Promoter Score (NPS) |

npsf | Nonparametric and Stochastic Efficiency and Productivity Analysis |

NPsimex | Nonparametric Smoothing for contaminated data using Simulation-Extrapolation |

npsm | Package for Nonparametric Statistical Methods using R |

npsp | Nonparametric spatial (geo)statistics |

npst | Generalization of Hewitt's Seasonality Test |

npsurv | Non-Parametric Survival Analysis |

NSA | Post-normalization of total copy numbers |

nscancor | Non-Negative and Sparse CCA |

NScluster | Simulation and Estimation of the Neyman-Scott Type Spatial Cluster Models |

nsga2R | Elitist Non-dominated Sorting Genetic Algorithm based on R |

nsgp | Non-Stationary Gaussian Process Regression |

NSM3 | Functions and Datasets to Accompany Hollander, Wolfe, and Chicken - Nonparametric Statistical Methods, Third Edition |

nsprcomp | Non-Negative and Sparse PCA |

nsRFA | Non-supervised Regional Frequency Analysis |

NSUM | Network Scale Up Method |

NUCOMBog | NUtrient Cycling and COMpetition Model Undisturbed Open Bog Ecosystems in a Temperate to Sub-Boreal Climate |

nullabor | Tools for Graphical Inference |

numbers | Number-Theoretic Functions |

numDeriv | Accurate Numerical Derivatives |

numOSL | Numeric Routines for Optically Stimulated Luminescence Dating |

nutshell | Data for "R in a Nutshell" |

nutshell.audioscrobbler | Audioscrobbler data for "R in a Nutshell" |

nutshell.bbdb | Baseball Database for "R in a Nutshell" |

nws | R functions for NetWorkSpaces and Sleigh |

nycflights13 | Flights that Departed NYC in 2013 |

oaColors | OpenAnalytics Colors Package |

oai | General Purpose 'Oai-PMH' Services Client |

OAIHarvester | Harvest Metadata Using OAI-PMH v2.0 |

oapackage | Orthogonal Array Package |

oaPlots | OpenAnalytics Plots Package |

Oarray | Arrays with arbitrary offsets |

oasis | Multiple Sclerosis Lesion Segmentation using Magnetic Resonance Imaging (MRI) |

OasisR | Outright Tool for the Analysis of Spatial Inequalities and Segregation |

oaxaca | Blinder-Oaxaca Decomposition |

obAnalytics | Limit Order Book Analytics |

objectProperties | A factory of self-describing properties |

objectSignals | objectSignals |

obliclus | Cluster-based factor rotation |

obliqueRF | Oblique Random Forests from Recursive Linear Model Splits |

oblique.tree | Oblique Trees for Classification Data |

obs.agree | An R package to assess agreement between observers |

OBsMD | Objective Bayesian Model Discrimination in Follow-Up Designs |

obsSens | Sensitivity analysis for Observational studies |

oc | OC Roll Call Analysis Software |

occ | Estimates PET neuroreceptor occupancies |

oce | Analysis of Oceanographic Data |

ocean | Biophysical Oceanography Tools |

OceanView | Visualisation of Oceanographic Data and Model Output |

ocedata | Oceanographic Datasets for Oce |

ocomposition | Regression for Rank-Indexed Compositional Data |

OData | R Helper for OData Web Services |

ODB | Open Document Databases (.odb) management |

odds.converter | Betting Odds Conversion |

odeintr | C++ ODE Solvers Compiled on-Demand |

odfWeave | Sweave processing of Open Document Format (ODF) files |

odfWeave.survey | Support for odfWeave on the survey package |

ODMconverter | Tools to Convert ODM Files |

OECD | Search and Extract Data from the OECD |

oem | Orthogonalizing Expectation maximization |

oglmx | Estimation of Ordered Generalized Linear Models |

Ohmage | R Client for Ohmage 2 server |

OIdata | Data sets and supplements (OpenIntro) |

OIsurv | Survival analysis supplement to OpenIntro guide |

OjaNP | Multivariate Methods Based on the Oja Median and Related Concepts |

okmesonet | Retrieve Oklahoma Mesonet climatological data |

olctools | Open Location Code Handling in R |

OligoSpecificitySystem | Oligo Specificity System |

OLScurve | OLS growth curve trajectories |

omd | filter the molecular descriptors for QSAR |

OmicKriging | Poly-Omic Prediction of Complex TRaits |

omics | '–omics' Data Analysis Toolbox |

oncomodel | Maximum likelihood tree models for oncogenesis |

Oncotree | Estimating oncogenetic trees |

OneArmPhaseTwoStudy | Planing, Monitoring and Evaluating Oncological Phase 2 Studies |

onemap | Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses |

ONETr | Efficient Authenticated Interaction with the O*NET API |

OneTwoSamples | Deal with one and two (normal) samples |

onewaytests | One-Way Independent Groups Design |

onion | octonions and quaternions |

onlinePCA | Online Principal Component Analysis |

onls | Orthogonal Nonlinear Least-Squares Regression |

ontologyIndex | Functions for Reading Ontologies into R |

ontologyPlot | Functions for Visualising Sets of Ontological Terms |

ontologySimilarity | Functions for Calculating Ontological Similarities |

OOmisc | Ozgur-Ozlem Miscellaneous |

OpasnetUtils | Opasnet Modelling Environment Utility Functions |

OPDOE | OPtimal Design Of Experiments |

opefimor | Option Pricing and Estimation of Financial Models in R |

openair | Tools for the Analysis of Air Pollution Data |

opencage | Interface to the OpenCage API |

OpenCL | Interface allowing R to use OpenCL |

opencpu | Embedded Scientific Computing and Reproducible Research with R |

openintro | OpenIntro data sets and supplemental functions |

OpenMPController | Control number of OpenMP threads dynamically |

OpenMx | Extended Structural Equation Modelling |

openNLP | Apache OpenNLP Tools Interface |

openNLPdata | Apache OpenNLP Jars and Basic English Language Models |

OpenRepGrid | Tools to analyse repertory grid data |

openssl | Toolkit for Encryption, Signatures and Certificates Based on OpenSSL |

OpenStreetMap | Access to Open Street Map Raster Images |

opentraj | Tools for Creating and Analysing Air Trajectory Data |

openVA | Automated Method for Verbal Autopsy |

openxlsx | Read, Write and Edit XLSX Files |

operators | Additional Binary Operators |

operator.tools | Utilities for Working with R's Operators |

OPI | Open Perimetry Interface |

ops | Optimal Power Space Transformation |

optAUC | Optimal Combinations of Diagnostic Tests Based on AUC |

optBiomarker | Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules |

optCluster | Determine Optimal Clustering Algorithm and Number of Clusters |

optDesignSlopeInt | Optimal Designs for Estimating the Slope Divided by the Intercept |

optextras | Tools to Support Optimization Methods |

OptGS | Near-Optimal and Balanced Group-Sequential Designs for Clinical Trials with Continuous Outcomes |

OptHedging | Estimation of value and hedging strategy of call and put options |

optifunset | Set Options if Unset |

optigrab | Command-Line Parsing for an R World |

OptimalCutpoints | Computing optimal cutpoints in diagnostic tests |

OptimaRegion | Confidence Regions for Optima |

optimbase | R port of the Scilab optimbase module |

optimsimplex | R port of the Scilab optimsimplex module |

optimx | A Replacement and Extension of the optim() Function |

OptInterim | Optimal Two and Three Stage Designs for Single-Arm and Two-Arm Randomized Controlled Trials with a Long-Term Binary Endpoint |

OptionPricing | Option Pricing with Efficient Simulation Algorithms |

OptiQuantR | Simplifies and Automates Analyzing and Reporting OptiQuant's log Data |

optiRum | Financial Functions & More |

optiscale | Optimal scaling |

optismixture | Optimal Mixture Weights in Multiple Importance Sampling |

optmatch | Functions for Optimal Matching |

optparse | Command Line Option Parser |

optpart | Optimal Partitioning of Similarity Relations |

optR | Optimization Toolbox for solving linear systems |

optrees | Optimal Trees in Weighted Graphs |

ora | Convenient Tools for Working with Oracle Databases |

orca | Computation of Graphlet Orbit Counts in Sparse Graphs |

ORCI | Several confidence intervals for the odds ratio |

orclus | ORCLUS subspace clustering |

ORCME | Order Restricted Clustering for Microarray Experiments |

orcutt | Estimate procedure in case of first order autocorrelation |

ordBTL | Modelling comparison data with ordinal response |

orddom | Ordinal Dominance Statistics |

ORDER2PARENT | Estimate parent distributions with data of several order statistics |

orderbook | Orderbook visualization/Charting software |

orderedLasso | Ordered Lasso and Time-lag Sparse Regression |

OrdFacReg | Least Squares, Logistic, and Cox-Regression with Ordered Predictors |

ordiBreadth | Ordinated Diet Breadth |

ordinal | Regression Models for Ordinal Data |

ordinalCont | Ordinal Regression Analysis for Continuous Scales |

ordinalgmifs | Ordinal Regression for High-dimensional Data |

OrdinalLogisticBiplot | Biplot representations of ordinal variables |

ordinalNet | Penalized Ordinal Regression |

OrdLogReg | Ordinal Logic Regression |

OrdMonReg | Compute least squares estimates of one bounded or two ordered isotonic regression curves |

OrdNor | Concurrent Generation of Ordinal and Normal Data with Given Correlation Matrix and Marginal Distributions |

ordPens | Selection and/or Smoothing of Ordinal Predictors |

ore | An R Interface to the Oniguruma Regular Expression Library |

ores | Connector to the Objective Revision Evaluation Service (ORES) |

OrgMassSpecR | Organic Mass Spectrometry |

orgR | Analyse Text Files Created by Emacs' Org mode |

ORIClust | Order-restricted Information Criterion-based Clustering Algorithm |

orientlib | Support for orientation data |

OriGen | Fast Spatial Ancestry via Flexible Allele Frequency Surfaces |

originr | Fetch Species Origin Data from the Web |

orloca | The package deals with Operations Research LOCational Analysis models |

orloca.es | Spanish version of orloca package |

ORMDR | ORMDR |

oro.dicom | Rigorous - DICOM Input / Output |

oro.nifti | Rigorous - NIfTI + ANALYZE + AFNI : Input / Output |

oro.pet | Rigorous - Positron Emission Tomography |

orQA | Order Restricted Assessment Of Microarray Titration Experiments |

orsifronts | Southern Ocean Frontal Distributions (Orsi) |

orsk | Converting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information |

orthogonalsplinebasis | Orthogonal B-Spline Basis Functions |

OrthoPanels | Dynamic Panel Models with Orthogonal Reparameterization of Fixed Effects |

orthopolynom | Collection of functions for orthogonal and orthonormal polynomials |

osc | Orthodromic Spatial Clustering |

osd | Orthogonal Signal Deconvolution for Spectra Deconvolution in GC-MS and GCxGC-MS Data |

osDesign | Design and analysis of observational studies |

osmar | OpenStreetMap and R |

osmplotr | Customisable Images of OpenStreetMap Data |

osrm | Interface Between R and the OpenStreetMap-Based Routing Service OSRM |

OTE | Optimal Trees Ensembles for Regression, Classification and Class Membership Probability Estimation |

OTRselect | Variable Selection for Optimal Treatment Decision |

OTUtable | North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions |

ouch | Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses |

outbreaker | Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data |

OutbreakTools | Basic Tools for the Analysis of Disease Outbreaks |

OutlierDC | Outlier Detection using quantile regression for Censored Data |

OutlierDM | Outlier Detection for Multi-replicated High-throughput Data |

outliers | Tests for outliers |

OutrankingTools | Functions for Solving Multiple-criteria Decision-making Problems |

OUwie | Analysis of Evolutionary Rates in an OU Framework |

overlap | Estimates of Coefficient of Overlapping for Animal Activity Patterns |

overlapping | Estimation of Overlapping in Empirical Distributions |

OxyBS | Processing of Oxy-Bisulfite Microarray Data |

oz | Plot the Australian Coastline and States |

P2C2M | Posterior Predictive Checks of Coalescent Models |

p2distance | Welfare's Synthetic Indicator |

p3state.msm | Analyzing survival data |

pa | Performance Attribution for Equity Portfolios |

PAactivPAL | Summarize Daily Physical Activity from 'activPAL' Accelerometer Data |

PabonLasso | Pabon Lasso Graphs and Comparing Situations of a Unit in Two Different Times |

PAC | Partition-Assisted Clustering |

pacbpred | PAC-Bayesian Estimation and Prediction in Sparse Additive Models |

pack | Convert values to/from raw vectors |

packagetrackr | Track R Package Downloads from RStudio's CRAN Mirror |

packcircles | Circle Packing |

packClassic | Toy example of Pack Classic |

packHV | A few Useful Functions for Statisticians |

packrat | A Dependency Management System for Projects and their R Package Dependencies |

packS4 | Toy Example of S4 Package |

pacman | Package Management Tool |

paco | Procrustes Application to Cophylogenetic Analysis |

pact | Predictive Analysis of Clinical Trials |

PACVB | Variational Bayes (VB) Approximation of Gibbs Posteriors with Hinge Losses |

Pade | PadÃ© Approximant Coefficients |

paf | Attributable Fraction Function for Censored Survival Data |

PAFit | Nonparametric Estimation of Preferential Attachment and Node Fitness in Temporal Complex Networks |

pagenum | Put Page Numbers on Graphics |

pageviews | An API Client for Wikimedia Traffic Data |

PAGI | The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways |

PAGWAS | Pathway Analysis Methods for Genomewide Association Data |

pairedCI | Confidence intervals for the ratio of locations and for the ratio of scales of two paired samples |

PairedData | Paired Data Analysis |

pairheatmap | A tool for comparing heatmaps |

pairsD3 | D3 Scatterplot Matrices |

PairViz | Visualization using Eulerian tours and Hamiltonian decompositions |

pairwise | Rasch Model Parameters by Pairwise Algorithm |

pairwiseCI | Confidence Intervals for Two Sample Comparisons |

palaeoSig | Significance Tests for Palaeoenvironmental Reconstructions |

paleobioDB | Download and Process Data from the Paleobiology Database |

paleofire | Analysis of Charcoal Records from the Global Charcoal Database |

paleoMAS | Paleoecological Analysis |

paleotree | Paleontological and Phylogenetic Analyses of Evolution |

paleoTS | Analyze Paleontological Time-Series |

palettetown | Use Pokemon Inspired Colour Palettes |

palinsol | Insolation for Palaeoclimate Studies |

palr | Colour Palettes for Data |

pamctdp | Principal Axes Methods for Contingency Tables with Partition Structures on Rows and Columns |

pamm | Power Analysis for Random Effects in Mixed Models |

pampe | Implementation of the Panel Data Approach Method for Program Evaluation |

pamr | Pam: prediction analysis for microarrays |

pan | Multiple Imputation for Multivariate Panel or Clustered Data |

pAnalysis | Benchmarking and Rescaling R2 using Noise Percentile Analysis |

PANDA | Preferential Attachment Based Common Neighbor Distribution Derived Functional Associations |

pander | An R Pandoc Writer |

pandocfilters | Pandoc Filters for R |

panelaggregation | Aggregate Longitudinal Survey Data |

panelAR | Estimation of Linear AR(1) Panel Data Models with Cross-Sectional Heteroskedasticity and/or Correlation |

PanelCount | Random Effects and/or Sample Selection Models for Panel Count Data |

Paneldata | Linear models for panel data |

pangaear | Client for the 'Pangaea' Database |

PANICr | PANIC Tests of Nonstationarity |

papayar | View Medical Research Images using the Papaya JavaScript Library |

papeR | A Toolbox for Writing Pretty Papers and Reports |

ParallelForest | Random Forest Classification with Parallel Computing |

parallelize.dynamic | Automate parallelization of function calls by means of dynamic code analysis |

parallelMap | Unified Interface to Parallelization Back-Ends |

parallelMCMCcombine | Methods for combining independent subset Markov chain Monte Carlo (MCMC) posterior samples to estimate a posterior density given the full data set |

parallelML | A Parallel-Voting Algorithm for many Classifiers |

ParallelPC | Paralellised Versions of Constraint Based Causal Discovery Algorithms |

parallelSVM | A Parallel-Voting Version of the Support-Vector-Machine Algorithm |

ParallelTree | Parallel Tree |

ParamHelpers | Helpers for Parameters in Black-Box Optimization, Tuning and Machine Learning |

paramlink | Parametric Linkage Analysis in R |

params | Simplify Parameters |

paran | Horn's Test of Principal Components/Factors |

parboost | Distributed Model-Based Boosting |

parcor | Regularized estimation of partial correlation matrices |

ParDNAcopy | Parallel implementation of the "segment" function of package "DNAcopy" |

ParentOffspring | Conduct the Parent-Offspring Test Using Monomorphic SNP Markers |

ParetoPosStable | Computing, Fitting and Validating the PPS Distribution |

parfm | Parametric Frailty Models |

parfossil | Parallelized functions for palaeoecological and palaeogeographical analysis |

parma | Portfolio Allocation and Risk Management Applications |

parmigene | Parallel Mutual Information estimation for Gene Network reconstruction |

parsec | Partial Orders in Socio-Economics |

parsedate | Recognize and Parse Dates in Various Formats, Including All ISO 8601 Formats |

partDSA | Partitioning Using Deletion, Substitution, and Addition Moves |

partialAR | Partial Autoregression |

partialOR | Partial Odds Ratio |

partitionMap | Partition Maps |

partitionMetric | Compute a distance metric between two partitions of a set |

partitions | Additive Partitions of Integers |

partools | Tools for the 'Parallel' Package |

partsm | Periodic Autoregressive Time Series Models |

party | A Laboratory for Recursive Partytioning |

partykit | A Toolkit for Recursive Partytioning |

parviol | Parviol |

PAS | Polygenic Analysis System (PAS) |

Pasha | Preprocessing of Aligned Sequences from HTS Analyses |

pass | Prediction and Stability Selection of Tuning Parameters |

password | Create Random Passwords |

pastecs | Package for Analysis of Space-Time Ecological Series |

pastis | Phylogenetic Assembly with Soft Taxonomic Inferences |

PASWR | PROBABILITY and STATISTICS WITH R |

PASWR2 | Probability and Statistics with R, Second Edition |

patchDVI | Package to Patch .dvi or .synctex Files |

patchPlot | Scatterplots of image patches |

patchSynctex | Communication Between Editor and Viewer for Literate Programs |

pathClass | Classification using biological pathways as prior knowledge |

pathdiagram | Basic functions for drawing path diagrams |

pathmox | Pathmox Approach of Segmentation Trees in Partial Least Squares Path Modeling |

pathological | Path Manipulation Utilities |

PathSelectMP | Backwards Variable Selection for Paths using M Plus |

patPRO | Visualizing Temporal Microbiome Data |

PatternClass | Class-focused pattern metric comparisons using simulation |

pauwels2014 | Bayesian Experimental Design for Systems Biology |

pavo | Perceptual Analysis, Visualization and Organization of Spectral Color Data in R |

pawacc | Physical activity with accelerometers |

PAWL | Implementation of the PAWL algorithm |

pbapply | Adding Progress Bar to '*apply' Functions |

pbatR | P2BAT |

PBD | Protracted Birth-Death Model of Diversification |

pbdBASE | Programming with Big Data – Base Wrappers for Distributed Matrices |

pbdDEMO | Programming with Big Data – Demonstrations and Examples Using 'pbdR' Packages |

pbdDMAT | Programming with Big Data – Distributed Matrix Methods |

pbdMPI | Programming with Big Data – Interface to MPI |

pbdNCDF4 | Programming with Big Data – Interface to Parallel Unidata NetCDF4 Format Data Files |

pbdPROF | Programming with Big Data — MPI Profiling Tools |

pbdSLAP | Programming with Big Data – Scalable Linear Algebra Packages |

pbdZMQ | Programming with Big Data – Interface to ZeroMQ |

PBImisc | A Set of Datasets Used in My Classes or in the Book 'Modele Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych' |

pbivnorm | Vectorized Bivariate Normal CDF |

pbkrtest | Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison |

pbo | Probability of Backtest Overfitting |

pBrackets | Plot Brackets |

pbs | Periodic B Splines |

PBSadmb | ADMB for R Using Scripts or GUI |

PBSddesolve | Solver for Delay Differential Equations |

PBSmapping | Mapping Fisheries Data and Spatial Analysis Tools |

PBSmodelling | GUI Tools Made Easy: Interact with Models and Explore Data |

pca3d | Three Dimensional PCA Plots |

PCA4TS | Segmenting Multiple Time Series by Contemporaneous Linear Transformation |

pcaBootPlot | Create 2D Principal Component Plots with Bootstrapping |

pcadapt | Fast Principal Component Analysis for Outlier Detection |

pcaL1 | Three L1-Norm PCA Methods |

pcalg | Methods for Graphical Models and Causal Inference |

PCAmixdata | Multivariate Analysis of Mixed Data |

pcaPP | Robust PCA by Projection Pursuit |

PCDSpline | Semiparametric regression analysis of panel count data using monotone splines |

pcev | Principal Component of Explained Variance |

pcg | Preconditioned Conjugate Gradient Algorithm for solving Ax=b |

PCGSE | Principal Component Gene Set Enrichment |

pch | Piecewise Constant Hazards Models for Censored and Truncated Data |

PCICt | Implementation of POSIXct work-alike for 365 and 360 day calendars |

pcIRT | IRT Models for Polytomous and Continuous Item Responses |

PCIT | Partial Correlation Coefficient with Information Theory |

pcnetmeta | Patient-Centered Network Meta-Analysis |

pco | Panel Cointegration Tests |

PCovR | Principal Covariates Regression |

PCPS | Principal Coordinates of Phylogenetic Structure |

pcrsim | Simulation of the Forensic DNA Process |

PCS | Calculate the probability of correct selection (PCS) |

pcse | Panel-Corrected Standard Error Estimation in R |

pdc | Permutation Distribution Clustering |

pdfCluster | Cluster analysis via nonparametric density estimation |

pdfetch | Fetch Economic and Financial Time Series Data from Public Sources |

pdftables | Programmatic Conversion of PDF Tables |

pdftools | Extract Text and Data from PDF Documents |

pdist | Partitioned Distance Function |

pdmod | Proximal/distal modeling framework for Pavlovian conditioning phenomena |

pdolsms | Panel Dynamic OLS Estimation of Cointegrating Vectors |

PDQutils | PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher Approximations |

pdR | Panel Data Regression: Threshold Model and Unit Root Tests |

PDSCE | Positive definite sparse covariance estimators |

peacots | Periodogram Peaks in Correlated Time Series |

peakPick | Peak Picking Methods Inspired by Biological Data |

Peaks | Peaks |

pear | Package for Periodic Autoregression Analysis |

pearson7 | Maximum Likelihood Inference for the Pearson VII Distribution with Shape Parameter 3/2 |

PearsonDS | Pearson Distribution System |

PearsonICA | Independent component analysis using score functions from the Pearson system |

pec | Prediction Error Curves for Risk Prediction Models in Survival Analysis |

pedantics | Functions to facilitate power and sensitivity analyses for genetic studies of natural populations |

PedCNV | An implementation for association analysis with CNV data |

pedgene | Gene-Level Statistics for Pedigree Data |

pedigree | Pedigree functions |

pedigreemm | Pedigree-based mixed-effects models |

pedometrics | Pedometric Tools and Techniques |

pegas | Population and Evolutionary Genetics Analysis System |

PEIP | Geophysical Inverse Theory and Optimization |

PEMM | A Penalized EM algorithm incorporating missing-data mechanism |

pems.utils | Portable Emissions (and Other Mobile) Measurement System Utilities |

penalized | L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model |

penalizedLDA | Penalized Classification using Fisher's Linear Discriminant |

penalizedSVM | Feature Selection SVM using penalty functions |

pencopula | Flexible Copula Density Estimation with Penalized Hierarchical B-Splines |

PenCoxFrail | Regularization in Cox Frailty Models |

pendensity | Density Estimation with a Penalized Mixture Approach |

penDvine | Flexible Pair-Copula Estimation in D-Vines using Bivariate Penalized Splines |

penMSM | Estimating Regularized Multi-state Models Using L1 Penalties |

pensim | Simulation of high-dimensional data and parallelized repeated penalized regression |

peperr | Parallelised Estimation of Prediction Error |

peplib | Peptide Library Analysis Methods |

PepPrep | Insilico peptide mutation, digestion and homologous comparison |

peptider | Evaluation of Diversity in Nucleotide Libraries |

Peptides | Calculate Indices and Theoretical Properties of Protein Sequences |

pequod | Moderated Regression Package |

perARMA | Periodic Time Series Analysis |

Perc | Using Percolation and Conductance to Find Information Flow Certainty in a Direct Network |

PerFit | Person Fit |

PerfMeas | PerfMeas: Performance Measures for ranking and classification tasks |

PerformanceAnalytics | Econometric tools for performance and risk analysis |

performanceEstimation | An Infra-Structure for Performance Estimation of Predictive Models |

pergola | Toolbox for Polyploid Genetic Data |

perm | Exact or Asymptotic permutation tests |

PermAlgo | Permutational Algorithm to Simulate Survival Data |

PerMallows | Permutations and Mallows Distributions |

permGPU | Using GPUs in Statistical Genomics |

permPATH | Permutation Based Gene Expression Pathway Analysis |

permubiome | A Permutation Based Test for Biomarker Discovery in Microbiome Data |

permutations | Permutations of a Finite Set |

permute | Functions for Generating Restricted Permutations of Data |

perry | Resampling-based prediction error estimation for regression models |

persiandictionary | English to Persian dictionary |

personograph | Pictographic Representation of Treatment Effects |

perspectev | Permutation of Species During Turnover Events |

perturb | Tools for evaluating collinearity |

pesticides | Analysis of single serving and composite pesticide residue measurements |

PET | Simulation and Reconstruction of PET Images |

pETM | Penalized Exponential Tilt Model |

pewdata | Reproducible Retrieval of Pew Research Center Datasets |

pez | Phylogenetics for the Environmental Sciences |

pgam | Poisson-Gamma Additive Models |

PGEE | Penalized Generalized Estimating Equations in High-Dimension |

PGICA | Parallel Group ICA Algorithm |

pgirmess | Data Analysis in Ecology |

pglm | panel generalized linear model |

pGLS | Generalized Least Square in comparative Phylogenetics |

PGM2 | Recursive method for construction of nested resolvable designs and uniform designs associated |

pgmm | Parsimonious Gaussian Mixture Models |

pgnorm | The p-Generalized Normal Distribution |

PGRdup | Discover Probable Duplicates in Plant Genetic Resources Collections |

pgs | Precision of Geometric Sampling |

ph2bayes | Bayesian Single-Arm Phase II Designs |

phalen | Phalen Algorithms and Functions |

phangorn | Phylogenetic Analysis in R |

PharmacoGx | Analysis of Large-Scale Pharmacogenomic Data |

PharmPow | Pharmacometric Power calculations for mixed study designs |

phaseR | Phase Plane Analysis of One and Two Dimensional Autonomous ODE Systems |

PhaseType | Inference for Phase-type Distributions |

phcfM | Modelling anthropogenic deforestation |

pheatmap | Pretty Heatmaps |

phenability | Nonparametric Stability Analysis |

phenex | Auxiliary Functions for Phenological Data Analysis |

PHENIX | Phenotypic Integration Index |

phenmod | Auxiliary functions for phenological data processing, modelling and result handling |

pheno | Auxiliary functions for phenological data analysis |

pheno2geno | High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains |

phenology | Tools to Manage a Parametric Function that Describes Phenology |

PHeval | Evaluation of the Proportional Hazards Assumption with a Standardized Score Process |

phia | Post-Hoc Interaction Analysis |

phmm | Proportional Hazards Mixed-effects Model (PHMM) |

phonenumber | Convert Letters to Numbers and Back as on a Telephone Keypad |

phonics | Phonetic Spelling Algorithms |

phonR | Tools for Phoneticians and Phonologists |

phonTools | Tools for Phonetic and Acoustic Analyses |

photobiology | 'Photobiological' Calculations |

photobiologyInOut | Read Spectral Data from Foreign Files |

photobiologyWavebands | Waveband Definitions for UV, VIS, and IR Radiation |

phreeqc | R Interface to Geochemical Modeling Software |

phtt | Panel Data Analysis with Heterogeneous Time Trends |

PhViD | PhViD: an R package for PharmacoVigilance signal Detection |

Phxnlme | Run Phoenix NLME and Perform Post-Processing |

PhyActBedRest | Marks periods of sleep in Actigraph accelerometer data |

phyclust | Phylogenetic Clustering (Phyloclustering) |

phyext2 | An Extension (for Package 'SigTree') of Some of the Classes in Package 'phylobase' |

phylin | Spatial Interpolation of Genetic Data |

phylobase | Base Package for Phylogenetic Structures and Comparative Data |

phyloclim | Integrating Phylogenetics and Climatic Niche Modeling |

phylocurve | Phylogenetic Comparative Methods for High-Dimensional Traits |

PHYLOGR | Functions for Phylogenetically Based Statistical Analyses |

phyloland | Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework |

phylolm | Phylogenetic Linear Regression |

PhyloMeasures | Fast and Exact Algorithms for Computing Phylogenetic Biodiversity Measures |

phylometrics | Estimating Statistical Errors of Phylogenetic Metrics |

phylosignal | Exploring the Phylogenetic Signal in Continuous Traits |

phylotools | Phylogenetic tools for Eco-phylogenetics |

phyloTop | Calculating Topological Properties of Phylogenies |

phyndr | Matches Tip and Trait Data |

phyreg | Implements the Phylogenetic Regression of Grafen (1989) |

PhysActBedRest | Marks Periods of 'Bedrest' in Actigraph Accelerometer Data |

PhysicalActivity | Process Physical Activity Accelerometer Data |

physiology | Calculate Physiological Characteristics of Adults and Children |

PhySortR | A Fast, Flexible Tool for Sorting Phylogenetic Trees |

phytools | Phylogenetic Tools for Comparative Biology (and Other Things) |

phytotools | Phytoplankton Production Tools |

pi0 | Estimating the Proportion of True Null Hypotheses for FDR |

picante | R tools for integrating phylogenies and ecology |

picasso | Pathwise Calibrated Sparse Shooting Algorithm |

pid | Process Improvement using Data |

piecewiseSEM | Piecewise Structural Equation Modeling |

PIGE | Self contained gene set analysis for gene- and pathway-environment interaction analysis |

PIGShift | Polygenic Inverse Gamma Shifts |

Pijavski | Global Univariate Minimization |

pinfsc50 | Sequence ("Fasta"), Annotation ("Gff") and Variants ("Vcf") for 17 Samples of "P. Infestans" and 1 "P. Mirabilis" |

pingr | Check If a Remote Computer is Up |

pinnacle.API | A Wrapper for the Pinnacle Sports API |

pipe.design | Dual-Agent Dose Escalation for Phase I Trials using the PIPE Design |

pipeR | Multi-Paradigm Pipeline Implementation |

PIPS | Predicted Interval Plots |

pitchRx | Tools for Harnessing 'MLBAM' 'Gameday' Data and Visualizing 'pitchfx' |

PivotalR | A Fast, Easy-to-use Tool for Manipulating Tables in Databases and A Wrapper of MADlib |

pixiedust | Tables so Beautifully Fine-Tuned You Will Believe It's Magic |

pixmap | Bitmap Images (“Pixel Maps”) |

PK | Basic Non-Compartmental Pharmacokinetics |

pkgconfig | Private Configuration for 'R' Packages |

pkgKitten | Create Simple Packages Which Do not Upset R Package Checks |

pkgmaker | Package development utilities |

PKgraph | Model diagnostics for population pharmacokinetic models |

PKI | Public Key Infrastucture for R Based on the X.509 Standard |

PKNCA | Perform Pharmacokinetic Non-Compartmental Analysis |

PKPDmodels | Pharmacokinetic/pharmacodynamic models |

PKreport | A reporting pipeline for checking population pharmacokinetic model assumption |

pks | Probabilistic Knowledge Structures |

pla | Parallel Line Assays |

plac | A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated Data |

plan | Tools for project planning |

planar | Multilayer Optics |

planor | Generation of Regular Factorial Designs |

plantecophys | Modelling and Analysis of Leaf Gas Exchange Data |

plaqr | Partially Linear Additive Quantile Regression |

PlayerRatings | Dynamic Updating Methods for Player Ratings Estimation |

playwith | A GUI for interactive plots using GTK+ |

plfm | Probabilistic Latent Feature Analysis |

plfMA | A GUI to View, Design and Export Various Graphs of Data |

plgp | Particle Learning of Gaussian Processes |

PLIS | Multiplicity control using Pooled LIS statistic |

plm | Linear Models for Panel Data |

plmDE | Additive partially linear models for differential gene expression analysis |

plmm | Partially Linear Mixed Effects Model |

pln | Polytomous logit-normit (graded logistic) model estimation |

PLordprob | Multivariate Ordered Probit Model via Pairwise Likelihood |

plot3D | Plotting Multi-Dimensional Data |

plot3Drgl | Plotting Multi-Dimensional Data - Using 'rgl' |

plotGoogleMaps | Plot Spatial or Spatio-Temporal Data Over Google Maps |

plotKML | Visualization of Spatial and Spatio-Temporal Objects in Google Earth |

plotly | Create Interactive Web Graphics via 'plotly.js' |

plotMCMC | MCMC Diagnostic Plots |

plotMElm | Plot Marginal Effects from Linear Models |

plotmo | Plot a Model's Response and Residuals |

plotpc | Plot Principal Component Histograms Around a Scatter Plot |

PlotPrjNetworks | Useful Networking Tools for Project Management |

PlotRegionHighlighter | Creates an envelope that surrounds a set of points plotted in a two dimensional space |

plotrix | Various Plotting Functions |

plotROC | Generate Useful ROC Curve Charts for Print and Interactive Use |

plotSEMM | Graphing Nonlinear Relations Among Latent Variables from Structural Equation Mixture Models |

plRasch | Log Linear by Linear Association models and Rasch family models by pseudolikelihood estimation |

PLRModels | Statistical inference in partial linear regression models |

pls | Partial Least Squares and Principal Component Regression |

PLSbiplot1 | The Partial Least Squares (PLS) Biplot |

plsdepot | Partial Least Squares (PLS) Data Analysis Methods |

plsdof | Degrees of Freedom and Statistical Inference for Partial Least Squares Regression |

plsgenomics | PLS Analyses for Genomics |

plspm | Tools for Partial Least Squares Path Modeling (PLS-PM) |

plspm.formula | Formula Based PLS Path Modeling |

plspolychaos | Sensitivity Indexes from Polynomial Chaos Expansions and PLS |

plsRbeta | Partial Least Squares Regression for Beta Regression Models |

plsRcox | Partial Least Squares Regression for Cox Models and Related Techniques |

plsRglm | Partial Least Squares Regression for Generalized Linear Models |

plsVarSel | Variable Selection in Partial Least Squares |

plugdensity | Plug-in Kernel Density Estimation |

plumber | An API Generator for R |

plumbr | Mutable and dynamic data models |

plus | Penalized Linear Unbiased Selection |

plusser | A Google+ Interface for R |

plyr | Tools for Splitting, Applying and Combining Data |

PMA | Penalized Multivariate Analysis |

pmc | Phylogenetic Monte Carlo |

pmcgd | pmcgd |

pmclust | Parallel Model-Based Clustering using Expectation-Gathering-Maximization Algorithm for Finite Mixture Gaussian Model |

PMCMR | Calculate Pairwise Multiple Comparisons of Mean Rank Sums |

pmg | Poor Man's GUI |

pmhtutorial | Minimal Working Examples for Particle Metropolis-Hastings |

pmlr | Penalized Multinomial Logistic Regression |

pmml | Generate PMML for Various Models |

pmmlTransformations | Transforms Input Data from a PMML Perspective |

pmr | Probability Models for Ranking Data |

pnea | Parametric Network Enrichment Analysis |

pnf | Prime Numbers and Integer Factorization |

png | Read and write PNG images |

pnmtrem | Probit-Normal Marginalized Transition Random Effects Models |

pnn | Probabilistic neural networks |

pocrm | Dose Finding in Drug Combination Phase I Trials Using PO-CRM |

pogit | Bayesian Variable Selection for a Poisson-Logistic Model |

PogromcyDanych | PogromcyDanych / DataCrunchers is the Masive Online Open Course that Brings R and Statistics to the People |

poibin | The Poisson Binomial Distribution |

PoiClaClu | Classification and clustering of sequencing data based on a Poisson model |

poilog | Poisson lognormal and bivariate Poisson lognormal distribution |

pointdensityP | Point Density for Geospatial Data |

pointRes | Analyzing Pointer Years and Components of Resilience |

PoisBinNonNor | Data Generation with Poisson, Binary and Continuous Components |

PoisBinOrd | Data Generation with Poisson, Binary and Ordinal Components |

PoisBinOrdNonNor | Generation of up to Four Different Types of Variables |

PoisBinOrdNor | Data Generation with Poisson, Binary, Ordinal and Normal Components |

poisDoubleSamp | Confidence Intervals with Poisson Double Sampling |

PoisNonNor | Simultaneous Generation of Count and Continuous Data |

PoisNor | Simultaneous generation of multivariate data with Poisson and normal marginals |

poisson | Simulating Homogenous & Non-Homogenous Poisson Processes |

poisson.glm.mix | Fit high dimensional mixtures of Poisson GLMs |

PoissonSeq | Significance analysis of sequencing data based on a Poisson log linear model |

poistweedie | Poisson-Tweedie exponential family models |

poLCA | Polytomous variable Latent Class Analysis |

polidata | Political Data Interface in R |

pollstR | Client for the HuffPost Pollster API |

polspline | Polynomial Spline Routines |

polyaAeppli | Implementation of the Polya-Aeppli distribution |

polyapost | Simulating from the Polya Posterior |

polychaosbasics | Sensitivity Indexes Calculated from Polynomial Chaos Expansions |

polyclip | Polygon Clipping |

polycor | Polychoric and Polyserial Correlations |

polyCub | Cubature over Polygonal Domains |

polyfreqs | Bayesian Population Genomics in Autopolyploids |

polynom | A Collection of Functions to Implement a Class for Univariate Polynomial Manipulations |

PolynomF | Polynomials in R |

PolyPatEx | Paternity Exclusion in Autopolyploid Species |

polysat | Tools for Polyploid Microsatellite Analysis |

polySegratio | Simulate and test marker dosage for dominant markers in autopolyploids |

polySegratioMM | Bayesian mixture models for marker dosage in autopolyploids |

PolyTrend | Trend Classification Algorithm |

polywog | Bootstrapped Basis Regression with Oracle Model Selection |

pom | POM - Patch Occupancy Models |

Pomic | Pattern Oriented Modelling Information Criterion |

pomp | Statistical Inference for Partially Observed Markov Processes |

pooh | Partial Orders and Relations |

popbio | Construction and Analysis of Matrix Population Models |

popdemo | Demographic Modelling Using Projection Matrices |

PopED | Population (and Individual) Optimal Experimental Design |

popEpi | Functions for Epidemiological Analysis using Population Data |

PopGenKit | Useful functions for (batch) file conversion and data resampling in microsatellite datasets |

PopGenome | An Efficient Swiss Army Knife for Population Genomic Analyses |

PopGenReport | A Simple Framework to Analyse Population Genetic Data |

popgraph | This is an R package that constructs and manipulates population graphs |

popKorn | For interval estimation of mean of selected populations |

poplite | Tools for Simplifying the Population and Querying of SQLite Databases |

poppr | Genetic Analysis of Populations with Mixed Reproduction |

popprxl | Read GenAlEx Files Directly from Excel |

popRange | popRange: A spatially and temporally explicit forward genetic simulator |

popReconstruct | Reconstruct Human Populations of the Recent Past |

popsom | Routines for Constructing and Evaluating Self-Organizing Maps |

population | Models for Simulating Populations |

PopVar | Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation |

pop.wolf | Models for Simulating Wolf Populations |

portes | Portmanteau Tests for Univariate and Multivariate Time Series Models |

portfolio | Analysing equity portfolios |

PortfolioAnalytics | Portfolio Analysis, Including Numerical Methods for Optimization of Portfolios |

PortfolioEffectEstim | High Frequency Price Estimators by PortfolioEffect |

PortfolioEffectHFT | High Frequency Portfolio Analytics by PortfolioEffect |

portfolioSim | Framework for simulating equity portfolio strategies |

PortRisk | Portfolio Risk Analysis |

postGIStools | Tools for Interacting with 'PostgreSQL' / 'PostGIS' Databases |

potts | Markov Chain Monte Carlo for Potts Models |

PottsUtils | Utility Functions of the Potts Models |

powell | Powell's UObyQA algorithm |

PoweR | Computation of Power and Level Tables for Hypothesis Tests |

Power2Stage | Power and Sample-Size Distribution of 2-Stage Bioequivalence Studies |

powerAnalysis | Power analysis in experimental design |

powerbydesign | Power Estimates for ANOVA Designs |

powerGWASinteraction | Power Calculations for GxE and GxG Interactions for GWAS |

poweRlaw | Analysis of Heavy Tailed Distributions |

powerMediation | Power/Sample Size Calculation for Mediation Analysis |

powerpkg | Power analyses for the affected sib pair and the TDT design |

powerplus | Exponentiation Operations |

powerSurvEpi | Power and Sample Size Calculation for Survival Analysis of Epidemiological Studies |

PowerTOST | Power and Sample Size Based on Two One-Sided t-Tests (TOST) for (Bio)Equivalence Studies |

PP | Person Parameter estimation |

ppcor | Partial and Semi-Partial (Part) Correlation |

ppiPre | Predict Protein-Protein Interactions Based on Functional and Topological Similarities |

ppls | Penalized Partial Least Squares |

ppmlasso | Point Process Models with LASSO Penalties |

pps | Functions for PPS sampling |

PPtree | Projection pursuit classification tree |

PPtreeViz | Projection Pursuit Classification Tree Visualization |

pqantimalarials | web tool for estimating under-five deaths caused by poor-quality antimalarials in sub-Saharan Africa |

prabclus | Functions for Clustering of Presence-Absence, Abundance and Multilocus Genetic Data |

pracma | Practical Numerical Math Functions |

PracTools | Tools for Designing and Weighting Survey Samples |

pragma | Provides a pragma / directive / keyword syntax for R |

prais | Prais-Winsten Estimation Procedure for AR(1) Serial Correlation |

praise | Praise Users |

praktikum | Kvantitatiivsete meetodite praktikumi asjad / Functions used in the course "Quantitative methods in behavioural sciences" (SHPH.00.004), University of Tartu |

prc | Paired Response Curve |

prcbench | Testing Workbench for Precision-Recall Curves |

prclust | Penalized Regression-Based Clustering Method |

precintcon | Precipitation Intensity, Concentration and Anomaly Analysis |

precrec | Calculate Accurate Precision-Recall and Receiver Operator Characteristics Curves |

PredictABEL | Assessment of Risk Prediction Models |

PredictiveRegression | Prediction Intervals for Three Basic Statistical Models |

predictmeans | Calculate Predicted Means for Linear Models |

PredictTestbench | Test Bench for Comparison of Data Prediction Models |

predmixcor | Classification rule based on Bayesian mixture models with feature selection bias corrected |

prefmod | Utilities to Fit Paired Comparison Models for Preferences |

PReMiuM | Dirichlet Process Bayesian Clustering, Profile Regression |

prepdat | Preparing Experimental Data for Statistical Analysis |

preprocomb | Tools for Preprocessing Combinations |

preproviz | Tools for Visualization of Interdependent Data Quality Issues |

prereg | R Markdown Template to Preregister Scientific Studies |

PresenceAbsence | Presence-Absence Model Evaluation |

presens | R Interface for PreSens Fiber Optic Data |

preseqR | Predicting Species Accumulation Curves |

PResiduals | Probability-Scale Residuals and Residual Correlations |

prettyGraphs | publication-quality graphics |

prettymapr | Scale Bar, North Arrow, and Pretty Margins in R |

prettyR | Pretty Descriptive Stats |

prettyunits | Pretty, Human Readable Formatting of Quantities |

prevalence | Tools for Prevalence Assessment Studies |

PrevMap | Geostatistical Modelling of Spatially Referenced Prevalence Data |

prevR | Estimating Regional Trends of a Prevalence from a DHS |

pRF | Permutation Significance for Random Forests |

prim | Patient Rule Induction Method (PRIM) |

primer | Functions and data for A Primer of Ecology with R |

primerTree | Visually Assessing the Specificity and Informativeness of Primer Pairs |

primes | Generate and Test for Prime Numbers |

PRIMsrc | PRIM Survival Regression Classification |

princurve | Fits a Principal Curve in Arbitrary Dimension |

prinsimp | Finding and plotting simple basis vectors for multivariate data |

prism | Access Data from the Oregon State Prism Climate Project |

PRISMA | Protocol Inspection and State Machine Analysis |

PrivateLR | Differentially Private Regularized Logistic Regression |

prLogistic | Estimation of Prevalence Ratios using Logistic Models |

pro | Point-Process Response Model for Optogenetics |

prob | Elementary Probability on Finite Sample Spaces |

probemod | Statistical Tools for Probing Moderation Effects |

probFDA | Probabilistic Fisher Discriminant Analysis |

ProbForecastGOP | Probabilistic weather forecast using the GOP method |

ProbitSpatial | Probit with Spatial Dependence, SAR and SEM Models |

probsvm | probsvm: Class probability estimation for Support Vector Machines |

ProbYX | Inference for the Stress-Strength Model R = P(Y<X) |

pROC | Display and Analyze ROC Curves |

processcontrol | Statistical Process Control Charts |

ProDenICA | Product Density Estimation for ICA using tilted Gaussian density estimates |

prodigenr | Research Project Directory Generator |

prodlim | Product-Limit Estimation for Censored Event History Analysis |

PROFANCY | The package can prioritize candidate disease metabolites based on global functional relationships between metabolites in the context of metabolic pathways |

profdpm | Profile Dirichlet Process Mixtures |

ProfessR | Grades Setting and Exam Maker |

ProfileLikelihood | Profile Likelihood for a Parameter in Commonly Used Statistical Models |

profileModel | Tools for profiling inference functions for various model classes |

profileR | Profile Analysis of Multivariate Data in R |

profilr | Quickly Profile Data in R |

profr | An alternative display for profiling information |

proftools | Profile Output Processing Tools for R |

prof.tree | An Alternative Display Profiling Data as Tree Structure |

profvis | Interactive Visualizations for Profiling R Code |

progenyClust | Finding the Optimal Cluster Number Using Progeny Clustering |

ProgGUIinR | support package for "Programming Graphical User Interfaces in R" |

prognosticROC | Prognostic ROC curves for evaluating the predictive capacity of a binary test |

progress | Terminal Progress Bars |

proj4 | A simple interface to the PROJ.4 cartographic projections library |

ProjectTemplate | Automates the creation of new statistical analysis projects |

ProNet | Biological Network Construction, Visualization and Analyses |

propagate | Propagation of Uncertainty |

PropCIs | Various confidence interval methods for proportions |

PropClust | Propensity Clustering and Decomposition |

prop.comb.RR | Analyzing Combination of Proportions and Relative Risk |

properties | Parse Java Properties Files for R Service Bus Applications |

proportion | Inference on Single Binomial Proportion and Bayesian Computations |

propOverlap | Feature (gene) selection based on the Proportional Overlapping Scores |

PropScrRand | Propensity score methods for assigning treatment in randomized trials |

prospectr | Miscellaneous functions for processing and sample selection of vis-NIR diffuse reflectance data |

ProteinDescriptors | Generates Various Protein Descriptors for Machine Learning Algorithms |

proteomicdesign | Optimization of a multi-stage proteomic study |

proteomics | Statistical Analysis of High Throughput Proteomics Data |

protiq | Protein (identification and) quantification based on peptide evidence |

proto | Prototype object-based programming |

protoclass | Interpretable classification with prototypes |

protoclust | Hierarchical Clustering with Prototypes |

PROTOLIDAR | PRocess TOol LIdar DAta in R |

protolite | Fast and Simple Object Serialization to Protocol Buffers |

proton | The Proton Game |

prototest | Inference on Prototypes from Clusters of Features |

protr | Generating Various Numerical Representation Schemes of Protein Sequence |

ProTrackR | Manipulate and Play 'ProTracker' Modules |

protViz | Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics |

provenance | Statistical Toolbox for Sedimentary Provenance Analysis |

proxy | Distance and Similarity Measures |

prozor | Minimal Protein Set Explaining Peptide Spectrum Matches |

PRROC | Precision-Recall and ROC Curves for Weighted and Unweighted Data |

pRSR | Test of Periodicity using Response Surface Regression |

pryr | Tools for Computing on the Language |

PSAboot | Bootstrapping for Propensity Score Analysis |

PSAgraphics | Propensity Score Analysis Graphics |

psbcGroup | Penalized Parametric and Semiparametric Bayesian Survival Models with Shrinkage and Grouping Priors |

PSCBS | Analysis of Parent-Specific DNA Copy Numbers |

pscl | Political Science Computational Laboratory, Stanford University |

pscore | Standardizing Physiological Composite Risk Endpoints |

psd | Adaptive, Sine-Multitaper Power Spectral Density Estimation |

psData | Download Regularly Maintained Political Science Data Sets |

pse | Parameter Space Exploration with Latin Hypercubes |

pseudo | Pseudo - observations |

pseval | Methods for Evaluating Principal Surrogates of Treatment Response |

PSF | Algorithm for Pattern Sequence Based Forecasting |

psgp | Projected Spatial Gaussian Process (psgp) methods |

pSI | Specificity Index Statistic |

psidR | Build Panel Data Sets from PSID Raw Data |

PsiHat | Several Local False Discovery Rate Estimators |

PSM | Non-Linear Mixed-Effects modelling using Stochastic Differential Equations |

pso | Particle Swarm Optimization |

psoptim | Particle Swarm Optimization |

pspearman | Spearman's rank correlation test |

pspline | Penalized Smoothing Splines |

pssm | Piecewise Exponential Model for Time to Progression and Time from Progression to Death |

PST | Probabilistic Suffix Trees and Variable Length Markov Chains |

PsumtSim | Simulations of grouped responses relative to baseline |

psy | Various procedures used in psychometry |

psych | Procedures for Psychological, Psychometric, and Personality Research |

psychometric | Applied Psychometric Theory |

psychomix | Psychometric Mixture Models |

psychotools | Infrastructure for Psychometric Modeling |

psychotree | Recursive Partitioning Based on Psychometric Models |

psyphy | Functions for analyzing psychophysical data in R |

psytabs | Produce Well-Formatted Tables for Psychological Research |

PTAk | Principal Tensor Analysis on k Modes |

PTE | Personalized Treatment Evaluator |

ptinpoly | Point-In-Polyhedron Test (2D and 3D) |

PtProcess | Time Dependent Point Process Modelling |

ptw | Parametric Time Warping |

ptycho | Bayesian Variable Selection with Hierarchical Priors |

PubBias | Performs simulation study to look for publication bias, using a technique described by Ioannidis and Trikalinos; Clin Trials. 2007;4(3):245-53 |

pubmed.mineR | Text Mining of PubMed Abstracts |

PubMedWordcloud | PubMed Word Clouds |

pubprint | Printing Results of Statistical Computing in a Publishable Way |

pullword | R Interface to Pullword Service |

pumilioR | Pumilio in R |

PurBayes | Bayesian Estimation of Tumor Purity and Clonality |

purge | Purge Training Data from Models |

purrr | Functional Programming Tools |

pushoverr | Send push notifications using Pushover |

PVAClone | Population Viability Analysis with Data Cloning |

pvar | Calculation and Application of p-Variation |

pvclass | P-Values for Classification |

pvclust | Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling |

PVR | Computes phylogenetic eigenvectors regression (PVR) and phylogenetic signal-representation curve (PSR) (with null and Brownian expectations) |

pvrank | Rank Correlations |

pvsR | An R package to interact with the Project Vote Smart API for scientific research |

PWD | Time Series Regression Using the Power Weighted Densities (PWD) Approach |

pweight | P-Value Weighting |

pwr | Basic Functions for Power Analysis |

PwrGSD | Power in a Group Sequential Design |

pwrRasch | Statistical Power Simulation for Testing the Rasch Model |

pwt | Penn World Table (Versions 5.6, 6.x, 7.x) |

pwt8 | Penn World Table (Version 8.x) |

pxR | PC-Axis with R |

pxweb | R Interface to the PX-Web/PC-Axis API |

pycno | Pycnophylactic Interpolation |

pyramid | Functions to draw population pyramid |

pystr | Python String Methods in R |

PythonInR | Use Python from Within R |

qap | Heuristics for the Quadratic Assignment Problem (QAP) |

QCA | Qualitative Comparative Analysis |

QCA3 | Yet another package for Qualitative Comparative Analysis |

QCAfalsePositive | Tests for Type I Error in Qualitative Comparative Analysis (QCA) |

QCAGUI | Modern Functions for Qualitative Comparative Analysis |

QCAtools | Helper Functions for QCA in R |

qcc | Quality Control Charts |

QCEWAS | Fast & Easy Quality Control of EWAS Results Files |

QCGWAS | Quality Control of Genome Wide Association Study results |

qclust | Robust Estimation of Gaussian Mixture Models |

qcr | Quality control and reliability |

QCSIS | Sure Independence Screening via Quantile Correlation and Composite Quantile Correlation |

qdap | Bridging the Gap Between Qualitative Data and Quantitative Analysis |

qdapDictionaries | Dictionaries and Word Lists for the 'qdap' Package |

qdapRegex | Regular Expression Removal, Extraction, and Replacement Tools |

qdapTools | Tools for the 'qdap' Package |

qdm | Fitting a Quadrilateral Dissimilarity Model to Same-Different Judgments |

QFRM | Pricing of Vanilla and Exotic Option Contracts |

qgraph | Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation |

qgtools | Tools for Quantitative Genetics Data Analyses |

QICD | Estimate the Coefficients for Non-Convex Penalized Quantile Regression Model by using QICD Algorithm |

qicharts | Quality Improvement Charts |

qiimer | Work with QIIME Output Files in R |

qlcData | Processing Data for Quantitative Language Comparison (QLC) |

qlcMatrix | Utility Sparse Matrix Functions for Quantitative Language Comparison |

qlcVisualize | Visualization for Quantitative Language Comparison (QLC) |

qLearn | Estimation and inference for Q-learning |

qmap | Statistical Transformations for Post-Processing Climate Model Output |

qmethod | Analysis of Subjective Perspectives Using Q Methodology |

qmrparser | Parser combinator in R |

QoLR | Analysis of Health-Related Quality of Life in Oncology |

qpcR | Modelling and analysis of real-time PCR data |

qPCR.CT | qPCR data analysis and plot package |

QPot | Quasi-Potential Analysis for Stochastic Differential Equations |

qqman | Q-Q and manhattan plots for GWAS data |

qqtest | Self Calibrating Quantile-Quantile Plots for Visual Testing |

qrage | Tools that Create D3 JavaScript Force Directed Graph from R |

qrcm | Quantile Regression Coefficients Modeling |

qrcode | QRcode Generator for R |

qrfactor | Simultaneous simulation of Q and R mode factor analyses with Spatial data |

qrjoint | Joint Estimation in Linear Quantile Regression |

qrLMM | Quantile Regression for Linear Mixed-Effects Models |

QRM | Provides R-Language Code to Examine Quantitative Risk Management Concepts |

qrmtools | Tools for Quantitative Risk Management |

qrng | (Randomized) Quasi-Random Number Generators |

qrNLMM | Quantile Regression for Nonlinear Mixed-Effects Models |

qrnn | Quantile Regression Neural Network |

QSARdata | Quantitative Structure Activity Relationship (QSAR) Data Sets |

qtbase | Interface Between R and Qt |

qte | Quantile Treatment Effects |

qtl | Tools for Analyzing QTL Experiments |

qtlbook | Datasets for the R/qtl Book |

qtlc | Densitometric Analysis of Thin-Layer Chromatography Plates |

qtlcharts | Interactive Graphics for QTL Experiments |

qtlDesign | Design of QTL experiments |

qtlhot | Inference for QTL Hotspots |

qtlmt | Tools for Mapping Multiple Complex Traits |

qtlnet | Causal Inference of QTL Networks |

QTLRel | Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees |

Qtools | Utilities for Quantiles |

qtpaint | Qt-Based Painting Infrastructure |

qtutils | Miscellaneous Qt-based utilities |

QuACN | QuACN: Quantitative Analysis of Complex Networks |

quad | Exact permutation moments of quadratic form statistics |

quadprog | Functions to solve Quadratic Programming Problems |

quadrupen | Sparsity by Worst-Case Quadratic Penalties |

qualCI | Causal Inference with Qualitative and Ordinal Information on Outcomes |

QualInt | Test for Qualitative Interactions |

qualityTools | Statistical Methods for Quality Science |

qualV | Qualitative Validation Methods |

qualvar | Implements Indices of Qualitative Variation Proposed by Wilcox (1973) |

Quandl | API Wrapper for Quandl.com |

quantable | Streamline Descriptive Analysis of Quantitative Data Matrices |

quantchem | Quantitative chemical analysis: calibration and evaluation of results |

quanteda | Quantitative Analysis of Textual Data |

quantification | Quantification of Qualitative Survey Data |

QuantifQuantile | Estimation of Conditional Quantiles using Optimal Quantization |

quantileDA | Quantile Classifier |

quantmod | Quantitative Financial Modelling Framework |

QuantPsyc | Quantitative Psychology Tools |

quantreg | Quantile Regression |

quantregForest | Quantile Regression Forests |

quantregGrowth | Growth Charts via Regression Quantiles |

quantreg.nonpar | Nonparametric Series Quantile Regression |

quantspec | Quantile-Based Spectral Analysis of Time Series |

QuantumClone | Clustering Mutations using High Throughput Sequencing (HTS) Data |

QuasiSeq | Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood |

questionr | Functions to Make Surveys Processing Easier |

queueing | Analysis of Queueing Networks and Models |

quhomology | Calculation of Homology of Quandles, Racks, Biquandles and Biracks |

QUIC | Regularized sparse inverse covariance matrix estimation |

quickmapr | Quickly Map and Explore Spatial Data |

quickpsy | Fits Psychometric Functions for Multiple Groups |

quickReg | Build Regression Models Quickly and Display the Results Using 'ggplot2' |

quint | Qualitative Interaction Trees |

quipu | Summary charts of micro satellite profiles for a set of biological samples |

Quor | Quantile Ordering |

qut | Quantile Universal Threshold |

qVarSel | Variables Selection for Clustering and Classification |

qvcalc | Quasi Variances for Factor Effects in Statistical Models |

qwraps2 | Quick Wraps 2 |

QZ | Generalized Eigenvalues and QZ Decomposition |

R0 | Estimation of R0 and Real-Time Reproduction Number from Epidemics |

R1magic | Compressive Sampling: Sparse Signal Recovery Utilities |

R2admb | 'ADMB' to R Interface Functions |

R2BayesX | Estimate Structured Additive Regression Models with BayesX |

R2Cuba | Multidimensional Numerical Integration |

r2d2 | Bivariate (Two-Dimensional) Confidence Region and Frequency Distribution |

r2dRue | 2d Rain Use Efficience model |

R2G2 | Converting R CRAN outputs into Google Earth |

R2GUESS | Wrapper Functions for GUESS |

R2HTML | HTML exportation for R objects |

R2jags | Using R to Run 'JAGS' |

r2lh | R to LaTeX and HTML |

R2MLwiN | Running 'MLwiN' from Within R |

R2OpenBUGS | Running OpenBUGS from R |

R2PPT | Simple R Interface to Microsoft PowerPoint using rcom or RDCOMClient |

R2STATS | A GTK GUI for fitting and comparing GLM and GLMM in R |

r2stl | r2stl, R package for visualizing data using a 3D printer |

R2SWF | Convert R Graphics to Flash Animations |

R2wd | Write MS-Word documents from R |

R2WinBUGS | Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS' |

R330 | An R package for Stats 330 |

R4CouchDB | An R Convenience Layer for CouchDB |

R4dfp | 4dfp MRI Image Read and Write Routines |

r4ss | R Code for Stock Synthesis |

R6 | Classes with Reference Semantics |

race | Racing methods for the selection of the best |

RAD | Fit RAD models to biological data |

RADami | R Package for Phylogenetic Analysis of RADseq Data |

RADanalysis | Normalization and Study of Rank Abundance Distributions |

radar | Fundamental Formulas for Radar |

radarchart | Radar Chart from Chart.js |

radiomics | Radiomic Image Processing Toolbox |

RadioSonde | Tools for plotting skew-T diagrams and wind profiles |

radir | Inverse-Regression Estimation of Radioactive Doses |

RadOnc | Analytical Tools for Radiation Oncology |

RadTran | Radon and Soil Gas Transport in 2D Porous Medium |

RAdwords | Loading Google Adwords Data into R |

rafalib | Convenience Functions for Routine Data Exploration |

rags2ridges | Ridge Estimation of Precision Matrices from High-Dimensional Data |

ragt2ridges | Ridge Estimation of the Vector Auto-Regressive (VAR) Processes |

RAHRS | Data Fusion Filters for Attitude Heading Reference System (AHRS) with Several Variants of the Kalman Filter and the Mahoney and Madgwick Filters |

rainbow | Rainbow Plots, Bagplots and Boxplots for Functional Data |

raincpc | Obtain and Analyze Rainfall Data from the Climate Prediction Center |

rainfreq | Rainfall Frequency (Design Storm) Estimates from the US National Weather Service |

rAltmetric | Retrieves Altmerics Data For Any Published Paper From Altmetric.com |

RAM | R for Amplicon-Sequencing-Based Microbial-Ecology |

Ramble | Combinatory Parser Implementation |

Rambo | The Random Subgraph Model |

rAmCharts | JavaScript Charts API Tool |

Ramd | Tools For Managing File/function Dependencies In R |

ramify | Additional Matrix Functionality |

RAMP | Regularized Generalized Linear Models with Interaction Effects |

RAMpath | Structural Equation Modeling using the reticular action model (RAM) Notation |

ramps | Bayesian Geostatistical Modeling with RAMPS |

ramsvm | Reinforced Angle-Based Multicategory Support Vector Machines |

randaes | Random number generator based on AES cipher |

randNames | Package Provides Access to Fake User Data |

random | True Random Numbers using RANDOM.ORG |

randomcoloR | Generate Attractive Random Colors |

RandomFields | Simulation and Analysis of Random Fields |

RandomFieldsUtils | Utilities for the Simulation and Analysis of Random Fields |

randomForest | Breiman and Cutler's Random Forests for Classification and Regression |

randomForest.ddR | Distributed 'randomForest' for Big Data using 'ddR' API |

randomForestSRC | Random Forests for Survival, Regression and Classification (RF-SRC) |

randomGLM | Random General Linear Model Prediction |

randomizationInference | Flexible Randomization-Based Inference |

randomizeBE | Function to Create a Random List for Crossover Studies |

randomizeR | Randomization for Clinical Trials |

randomizr | Easy to Use Tools for Common Forms of Random Assignment |

randomLCA | Random Effects Latent Class Analysis |

randomNames | Function for Generating Random Names and a Dataset |

random.polychor.pa | A Parallel Analysis With Polychoric Correlation Matrices |

randomUniformForest | Random Uniform Forests for Classification, Regression and Unsupervised Learning |

randstr | Generate Random Strings |

randtests | Testing randomness in R |

randtoolbox | Toolbox for Pseudo and Quasi Random Number Generation and RNG Tests |

RandVar | Implementation of Random Variables |

rangeBuilder | Occurrence Filtering and Generation of Species Range Polygons |

rangeMapper | A Platform for the Study of Macroecology of Life History Traits |

rangemodelR | Mid-Domain Effect and Species Richness Patterns |

ranger | A Fast Implementation of Random Forests |

RankAggreg | Weighted rank aggregation |

Rankcluster | Model-Based Clustering for Multivariate Partial Ranking Data |

rankdist | Distance Based Ranking Models |

rankFD | Rank-Based Tests for General Factorial Designs |

rankhazard | Rank-Hazard Plots |

RankResponse | Ranking Responses in a Single Response Question or a Multiple Response Question |

RANKS | Ranking of Nodes with Kernelized Score Functions |

RANN | Fast Nearest Neighbour Search (Wraps Arya and Mount's ANN Library) |

RANN.L1 | Fast Nearest Neighbour Search (Wraps ANN Library) Using L1 Metric |

RAP | Reversal Association Pattern |

RapidPolygonLookup | Polygon lookup using kd trees |

RAPIDR | Reliable Accurate Prenatal non-Invasive Diagnosis R package |

RApiSerialize | R API Serialization |

RAppArmor | Bindings to AppArmor and Security Related Linux Tools |

rappdirs | Application Directories: Determine Where to Save Data, Caches, and Logs |

rapport | A Report Templating System |

rapportools | Miscellaneous (stats) helper functions with sane defaults for reporting |

RArcInfo | Functions to import data from Arc/Info V7.x binary coverages |

rareGE | Testing Gene-Environment Interaction for Rare Genetic Variants |

rareNMtests | Ecological and biogeographical null model tests for comparing rarefaction curves |

Rarity | Calculation of Rarity Indices for Species and Assemblages of Species |

rARPACK | Solvers for Large Scale Eigenvalue and SVD Problems |

RaschSampler | Rasch Sampler |

rasclass | Supervised Raster Image Classification |

rase | Range Ancestral State Estimation for Phylogeography and Comparative Analyses |

raster | Geographic Data Analysis and Modeling |

rasterVis | Visualization Methods for Raster Data |

RateDistortion | Routines for Solving Rate-Distortion Problems |

rateratio.test | Exact rate ratio test |

raters | A Modification of Fleiss' Kappa in Case of Nominal and Ordinal Variables |

rationalfun | Manipulation of Rational Functions |

RAtmosphere | Standard Atmospheric profiles |

rattle | Graphical User Interface for Data Mining in R |

rAverage | Parameter estimation for the averaging model of Information Integration Theory |

rAvis | Interface to the Bird-Watching Dataset Proyecto AVIS |

rbamtools | Read and Write BAM (Binary Alignment) Files |

rBayesianOptimization | Bayesian Optimization of Hyperparameters |

rbefdata | BEFdata R package |

rbenchmark | Benchmarking routine for R |

RBerkeley | Oracle 'Berkeley DB' Interface for R |

rBeta2009 | The Beta Random Number and Dirichlet Random Vector Generating Functions |

rbhl | Interface to the 'Biodiversity' 'Heritage' Library |

RbioRXN | Process Rhea, KEGG, MetaCyc, Unipathway Biochemical Reaction Data |

rbiouml | Interact with BioUML Server |

rbison | Interface to the 'USGS' 'BISON' 'API' |

Rbitcoin | R & bitcoin integration |

rbitcoinchartsapi | R Package for the BitCoinCharts.com API |

Rblpapi | R Interface to Bloomberg |

rbmn | Handling Linear Gaussian Bayesian Networks |

rbokeh | R Interface for Bokeh |

Rborist | Extensible, Parallelizable Implementation of the Random Forest Algorithm |

rbounds | Perform Rosenbaum bounds sensitivity tests for matched and unmatched data |

RBPcurve | The Residual-Based Predictiveness Curve |

rbugs | Fusing R and OpenBugs and Beyond |

rbundler | Rbundler manages an application's dependencies systematically and repeatedly |

rbvs | Ranking-Based Variable Selection |

RCA | Relational Class Analysis |

R.cache | Fast and Light-Weight Caching (Memoization) of Objects and Results to Speed Up Computations |

RCALI | Calculation of the Integrated Flow of Particles between Polygons |

rcanvec | Access and Plot CanVec and CanVec+ Data for Rapid Basemap Creation in Canada |

Rcapture | Loglinear Models for Capture-Recapture Experiments |

rCarto | This package builds maps with a full cartographic layout |

RCassandra | R/Cassandra interface |

rCBA | CBA Classifier for R |

rcbalance | Large, Sparse Optimal Matching with Refined Covariate Balance |

rcbsubset | Optimal Subset Matching with Refined Covariate Balance |

rcdd | Computational Geometry |

rcdk | Interface to the CDK Libraries |

rcdklibs | The CDK Libraries Packaged for R |

RCEIM | RCEIM - R Cross Entropy Inspired Method for Optimization |

RcellData | Example Dataset for 'Rcell' Package |

Rcereal | C++ Header Files of 'cereal' |

Rcgmin | Conjugate Gradient Minimization of Nonlinear Functions |

rchallenge | A Simple Data Science Challenge System |

rchess | Chess Move, Generation/Validation, Piece Placement/ Movement, and Check/Checkmate/Stalemate Detection |

Rchoice | Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters |

rChoiceDialogs | rChoiceDialogs collection |

RChronoModel | Post-Processing of the Markov Chain Simulated by ChronoModel |

rcicr | Reverse-Correlation Image-Classification Toolbox |

RCircos | Circos 2D Track Plot |

RClimMAWGEN | RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather GENeretor): a package to generate time series of climate indices from RMAWGEN generations |

rClinicalCodes | R tools for integrating with the www.clinicalcodes.org repository |

rclinicaltrials | Download Aggregate Trial Information and Results from ClinicalTrials.gov |

RClone | Partially Clonal Populations Analysis |

Rclusterpp | Linkable C++ clustering |

rCMA | R-to-Java Interface for 'CMA-ES' |

rcmdcheck | Run 'R CMD check' from 'R' and Capture Results |

Rcmdr | R Commander |

RcmdrMisc | R Commander Miscellaneous Functions |

RcmdrPlugin.BCA | Rcmdr Plug-In for Business and Customer Analytics |

RcmdrPlugin.coin | Rcmdr Coin Plug-In |

RcmdrPlugin.depthTools | R commander Depth Tools Plug-In |

RcmdrPlugin.DoE | R Commander Plugin for (industrial) Design of Experiments |

RcmdrPlugin.doex | Rcmdr plugin for Stat 4309 course |

RcmdrPlugin.EACSPIR | Plugin de R-Commander para el Manual 'EACSPIR' |

RcmdrPlugin.EBM | Rcmdr Evidence Based Medicine Plug-in Package |

RcmdrPlugin.EcoVirtual | Rcmdr EcoVirtual Plugin |

RcmdrPlugin.epack | Rcmdr plugin for time series |

RcmdrPlugin.Export | Export R Output to LaTeX or HTML |

RcmdrPlugin.EZR | R Commander Plug-in for the EZR (Easy R) Package |

RcmdrPlugin.FactoMineR | Graphical User Interface for FactoMineR |

RcmdrPlugin.GWRM | R Commander Plug-in for Fitting Generalized Waring Regression Models |

RcmdrPlugin.HH | Rcmdr Support for the HH Package |

RcmdrPlugin.IPSUR | An IPSUR Plugin for the R Commander |

RcmdrPlugin.KMggplot2 | An Rcmdr Plug-in for Kaplan-Meier Plots and Other Plots by Using the ggplot2 Package |

RcmdrPlugin.lfstat | Rcmdr Plug-In for low flow analysis |

RcmdrPlugin.MA | Graphical User Interface for Conducting Meta-Analyses in R |

RcmdrPlugin.mosaic | Adds menu items to produce mosaic plots and assoc plots to Rcmdr |

RcmdrPlugin.MPAStats | R Commander Plug-in for MPA Statistics |

RcmdrPlugin.NMBU | R Commander Plug-in for University Level Applied Statistics |

RcmdrPlugin.orloca | orloca Rcmdr Plug-in |

RcmdrPlugin.plotByGroup | Rcmdr plots by group using lattice |

RcmdrPlugin.pointG | Graphical POINT of view for questionnaire data Rcmdr Plug-In |

RcmdrPlugin.qual | Rcmdr plugin for quality control course |

RcmdrPlugin.RMTCJags | R MTC Jags 'Rcmdr' Plugin |

RcmdrPlugin.ROC | Rcmdr Receiver Operator Characteristic Plug-In PACKAGE |

RcmdrPlugin.sampling | Tools for sampling in Official Statistical Surveys |

RcmdrPlugin.SCDA | Rcmdr Plugin for Designing and Analyzing Single-case Experiments |

RcmdrPlugin.seeg | Rcmdr Plugin for seeg |

RcmdrPlugin.SLC | SLC Rcmdr Plug-in |

RcmdrPlugin.SM | Rcmdr Sport Management Plug-In |

RcmdrPlugin.sos | Efficiently search the R help pages |

RcmdrPlugin.steepness | Steepness Rcmdr Plug-in |

RcmdrPlugin.survival | R Commander Plug-in for the 'survival' Package |

RcmdrPlugin.TeachingDemos | Rcmdr Teaching Demos Plug-In |

RcmdrPlugin.temis | Graphical Integrated Text Mining Solution |

RcmdrPlugin.UCA | UCA Rcmdr Plug-in |

RCMIP5 | Tools for Manipulating and Summarizing CMIP5 Data |

Rcolombos | Interface to Colombos Compendia using the Exposed REST API |

RColorBrewer | ColorBrewer Palettes |

RConics | Computations on Conics |

rcorpora | A Collection of Small Text Corpora of Interesting Data |

Rcplex | R interface to CPLEX |

RCPmod | Regions of common profiles modelling with mixtures-of-experts |

Rcpp | Seamless R and C++ Integration |

Rcpp11 | R and C++11 |

RcppAnnoy | 'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest Neighbors |

RcppAPT | 'Rcpp' Interface to the APT Package Manager |

RcppArmadillo | 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library |

RcppBDT | Rcpp bindings for the Boost Date_Time library |

rcppbugs | R binding for cppbugs |

RcppCCTZ | 'Rcpp' Bindings for the 'CCTZ' Library |

RcppClassic | Deprecated 'classic' Rcpp API |

RcppClassicExamples | Examples using RcppClassic to interface R and C++ |

RcppCNPy | Read-Write Support for NumPy Files via Rcpp |

RcppDE | Global Optimization by Differential Evolution in C++ |

RcppDL | Deep Learning Methods via Rcpp |

RcppEigen | 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library |

RcppExamples | Examples using 'Rcpp' to Interface R and C++ |

RcppFaddeeva | 'Rcpp' Bindings for the 'Faddeeva' Package |

RcppGSL | 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices |

RcppMLPACK | Rcpp Integration for MLPACK Library |

RcppNumerical | 'Rcpp' Integration for Numerical Computing Libraries |

RcppOctave | Seamless Interface to Octave – And Matlab |

RcppParallel | Parallel Programming Tools for 'Rcpp' |

RcppProgress | An Interruptible Progress Bar with OpenMP Support for C++ in R Packages |

RcppRedis | 'Rcpp' Bindings for 'Redis' using the 'hiredis' Library |

RcppRoll | Efficient Rolling / Windowed Operations |

RcppShark | R Interface to the Shark Machine Learning Library |

RcppSMC | Rcpp bindings for Sequential Monte Carlo |

RcppStreams | Rcpp Integration of the Streamulus DSEL for Stream Processing |

RcppTOML | 'Rcpp' Bindings to Parser for Tom's Obvious Markup Language |

RcppXts | Interface the xts API via Rcpp |

RcppZiggurat | 'Rcpp' Integration of Different "Ziggurat" Normal RNG Implementations |

RCriteo | Loading Criteo Data into R |

rcrossref | Client for Various 'CrossRef' 'APIs' |

rcrypt | Symmetric File Encryption Using GPG |

RCryptsy | Access to Cryptsy Crypto-Currency Exchange Public Information API via R |

Rcsdp | R Interface to the CSDP Semidefinite Programming Library |

rCUR | CUR decomposition package |

RCurl | General Network (HTTP/FTP/...) Client Interface for R |

Rd2roxygen | Convert Rd to Roxygen Documentation |

rda | Shrunken Centroids Regularized Discriminant Analysis |

RDataCanvas | Basic Runtime Support for Datacanvas.io |

rdatacite | 'DataCite' Client for 'OAI-PMH' Methods and their Search 'API' |

rdatamarket | Data access API for DataMarket.com |

rdd | Regression Discontinuity Estimation |

rddtools | Toolbox for Regression Discontinuity Design ('RDD') |

rDEA | Robust Data Envelopment Analysis (DEA) for R |

rdetools | Relevant Dimension Estimation (RDE) in Feature Spaces |

R.devices | Unified Handling of Graphics Devices |

rdian | Client Library for The Guardian |

RDIDQ | It perform Quality check on data |

RDieHarder | R interface to the dieharder RNG test suite |

Rdistance | Distance Sampling Analyses |

RDML | Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files |

rDNA | R Bindings for the Discourse Network Analyzer |

rdnb | R Interface to the Deutsche Nationalbibliothek (German National Library) API |

Rdpack | Update and Manipulate Rd Documentation Objects |

rdrobust | Robust Data-Driven Statistical Inference in Regression-Discontinuity Designs |

rdrop2 | Programmatic Interface to the 'Dropbox' API |

rdryad | Access for Dryad Web Services |

RDS | Respondent-Driven Sampling |

Rdsdp | R Interface to DSDP Semidefinite Programming Library |

Rdsm | Threads Environment for R |

RDSTK | An R wrapper for the Data Science Toolkit API |

rDVR | The rDVR package allows you to start stop and save a video server from within R |

ReacTran | Reactive transport modelling in 1D, 2D and 3D |

readbitmap | Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG) |

readBrukerFlexData | Reads Mass Spectrometry Data in Bruker *flex Format |

readbulk | Read and Combine Multiple Data Files |

reader | Suite of Functions to Flexibly Read Data from Files |

readMLData | Reading Machine Learning Benchmark Data Sets in Different Formats |

readMzXmlData | Reads Mass Spectrometry Data in mzXML Format |

readODS | Read ODS Files |

readr | Read Tabular Data |

readstata13 | Import Stata Data Files |

readxl | Read Excel Files |

RealVAMS | Multivariate VAM Fitting |

reams | Resampling-Based Adaptive Model Selection |

Rearrangement | Monotonize Point and Interval Functional Estimates by Rearrangement |

REAT | Regional Economic Analysis Tools |

REBayes | Empirical Bayes Estimation and Inference in R |

rebird | R Client for the eBird Database of Bird Observations |

rebmix | Finite Mixture Modeling, Clustering & Classification |

rebus | Build Regular Expressions in a Human Readable Way |

rebus.base | Core Functionality for the 'rebus' Package |

rebus.datetimes | Date and Time Extensions for the 'rebus' Package |

rebus.numbers | Numeric Extensions for the 'rebus' Package |

rebus.unicode | Unicode Extensions for the 'rebus' Package |

RECA | Relevant Component Analysis for Supervised Distance Metric Learning |

rechonest | R Interface to Echo Nest API |

ReCiPa | Redundancy Control in Pathways databases |

recluster | Ordination Methods for the Analysis of Beta-Diversity Indices |

recmap | Compute the Rectangular Statistical Cartogram |

recoder | A Simple and Flexible Recoder |

recommenderlab | Lab for Developing and Testing Recommender Algorithms |

recommenderlabBX | Book-Crossing Dataset (BX) for 'recommenderlab' |

recommenderlabJester | Jester Dataset for 'recommenderlab' |

reconstructr | Session Reconstruction and Analysis |

RecordLinkage | Record Linkage in R |

Records | Record Values and Record Times |

recosystem | Recommender System using Matrix Factorization |

reda | Recurrent Event Data Analysis |

REdaS | Companion Package to the Book 'R: EinfÃ¼hrung durch angewandte Statistik' |

redcapAPI | R Interface to REDCap |

REDCapR | Interaction Between R and REDCap |

RedditExtractoR | Reddit Data Extraction Toolkit |

reddPrec | Reconstruction of Daily Data - Precipitation |

redist | Markov Chain Monte Carlo Methods for Redistricting Simulation |

redland | RDF Library Bindings in R |

rEDM | Applications of Empirical Dynamic Modeling from Time Series |

REEMtree | Regression Trees with Random Effects for Longitudinal (Panel) Data |

ref | References for R |

referenceIntervals | Reference Intervals |

RefFreeEWAS | EWAS using Reference-Free DNA Methylation Mixture Deconvolution |

refGenome | Gene and Splice Site Annotation Using Annotation Data from Ensembl and UCSC Genome Browsers |

RefManageR | Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management |

refnr | Refining Data Table Using a Set of Formulas |

refset | Subsets with Reference Semantics |

refund | Regression with Functional Data |

refund.shiny | Interactive Plotting for Functional Data Analyses |

refund.wave | Wavelet-Domain Regression with Functional Data |

RegClust | Cluster analysis via regression coefficients |

reGenotyper | Detecting Mislabeled Samples in Genetic Data |

REGENT | Risk Estimation for Genetic and Environmental Traits |

regexr | Readable Regular Expressions |

registry | Infrastructure for R Package Registries |

reglogit | Simulation-Based Regularized Logistic Regression |

regpro | Nonparametric Regression |

regress | Gaussian linear models with linear covariance structure |

RegressionFactory | Expander Functions for Generating Full Gradient and Hessian from Single- and Multi-Slot Base Distributions |

regRSM | Random Subspace Method (RSM) for Linear Regression |

regsel | Variable Selection and Regression |

regsem | Performs Regularization on Structural Equation Models |

regspec | Non-Parametric Bayesian Spectrum Estimation for Multirate Data |

regsubseq | Detect and Test Regular Sequences and Subsequences |

regtest | Regression testing |

rehh | Searching for Footprints of Selection using Haplotype Homozygosity Based Tests |

rela | Item Analysis Package with Standard Errors |

relaimpo | Relative importance of regressors in linear models |

Relatedness | An Algorithm to Infer Relatedness |

relations | Data Structures and Algorithms for Relations |

relax | relax – R Editor for Literate Analysis and lateX |

relaxnet | Relaxation of glmnet models (as in relaxed lasso, Meinshausen 2007) |

relaxo | Relaxed Lasso |

reldist | Relative Distribution Methods |

relen | Compute Relative Entropy |

relevent | Relational Event Models |

Reliability | Functions for estimating parameters in software reliability models |

ReliabilityTheory | Tools for Structural Reliability Analysis |

reliaR | Package for some probability distributions |

relimp | Relative Contribution of Effects in a Regression Model |

relMix | Relationship Inference Based on Mixtures |

relSim | Relative Simulator |

relsurv | Relative Survival |

RelValAnalysis | Relative Value Analysis |

rem | Relational Event Models (REM) |

rematch | Match Regular Expressions with a Nicer 'API' |

remix | Remix your data |

rEMM | Extensible Markov Model for Modelling Temporal Relationships Between Clusters |

remMap | Regularized Multivariate Regression for Identifying Master Predictors |

remote | Empirical Orthogonal Teleconnections in R |

remoter | Remote R: Control a Remote R Session from a Local One |

REndo | Fitting Linear Models with Endogenous Regressors when No External Instruments are Available |

Renext | Renewal Method for Extreme Values Extrapolation |

RenextGUI | GUI for Renext |

rentrez | Entrez in R |

Reol | R interface to the Encyclopedia of Life |

ReorderCluster | Reordering the dendrogram according to the class labels |

RepeatABEL | GWAS for Multiple Observations on Related Individuals |

RepeatedHighDim | Global tests for expression data of high-dimensional sets of molecular features |

repfdr | Replicability Analysis for Multiple Studies of High Dimension |

repijson | Tools for Handling EpiJSON (Epidemiology Data) Files |

replicatedpp2w | Two-Way ANOVA-Like Method to Analyze Replicated Point Patterns |

replicationInterval | Replication Interval Functions |

repmis | Miscellaneous Tools for Reproducible Research |

repo | A Data-Centered Data Flow Manager |

repolr | Repeated Measures Proportional Odds Logistic Regression |

ReporteRs | Microsoft Word, Microsoft PowerPoint and HTML Documents Generation |

ReporteRsjars | External jars required for package ReporteRs |

reportr | A General Message and Error Reporting System |

reportRx | Tools for automatically generating reproducible clinical report |

reports | Assist the Workflow of Writing Academic Articles and Other Reports |

reporttools | Generate LaTeX Tables of Descriptive Statistics |

REPPlab | R Interface to 'EPP-Lab', a Java Program for Exploratory Projection Pursuit |

repr | Serializable Representations |

represent | Determine the representativity of two multidimensional data sets |

reproducer | Reproduce Statistical Analyses and Meta-Analyses |

REQS | R/EQS Interface |

request | High Level 'HTTP' Client |

rerddap | General Purpose Client for 'ERDDAP' Servers |

REREFACT | Reordering and/or Reflecting Factors for Simulation Studies with Exploratory Factor Analysis |

reReg | Recurrent Event Regression |

resample | Resampling Functions |

resemble | Regression and Similarity Evaluation for Memory-Based Learning in Spectral Chemometrics |

reservoir | Tools for Analysis, Design, and Operation of Water Supply Storages |

reshape | Flexibly reshape data |

reshape2 | Flexibly Reshape Data: A Reboot of the Reshape Package |

reshapeGUI | A GUI for the reshape2 and plyr packages |

ResistorArray | electrical properties of resistor networks |

ResourceSelection | Resource Selection (Probability) Functions for Use-Availability Data |

RESS | Integrates R and Essentia |

REST | RcmdrPlugin Easy Script Templates |

restimizeapi | Functions for Working with the 'www.estimize.com' Web Services |

restlos | Robust Estimation of Location and Scatter |

restorepoint | Debugging with Restore Points |

resumer | Build Resumes with R |

rethinker | RethinkDB Client |

retimes | Reaction Time Analysis |

retistruct | Retinal Reconstruction Program |

retrosheet | Import Professional Baseball Data from 'Retrosheet' |

reutils | Talk to the NCBI EUtils |

reval | Repeated Function Evaluation for Sensitivity Analysis |

revealedPrefs | Revealed Preferences and Microeconomic Rationality |

revealjs | R Markdown Format for 'reveal.js' Presentations |

RevEcoR | Reverse Ecology Analysis on Microbiome |

reweight | Adjustment of Survey Respondent Weights |

rex | Friendly Regular Expressions |

Rexperigen | R Interface to Experigen |

rexpokit | R wrappers for EXPOKIT; other matrix functions |

Rfacebook | Access to Facebook API via R |

RFc | Client for FetchClimate Web Service |

rFDSN | Get Seismic Data from the International Federation of Digital Seismograph Networks |

rFerns | Random Ferns Classifier |

RFGLS | Rapid Feasible Generalized Least Squares |

RFgroove | Importance Measure and Selection for Groups of Variables with Random Forests |

rfigshare | An R Interface to 'figshare' |

R.filesets | Easy Handling of and Access to Files Organized in Structured Directories |

RFinanceYJ | RFinanceYJ |

rfishbase | R Interface to 'FishBase' |

rfisheries | 'Programmatic Interface to the 'openfisheries.org' API' |

Rfit | Rank Estimation for Linear Models |

RFLPtools | Tools to analyse RFLP data |

RFmarkerDetector | Multivariate Analysis of Metabolomics Data using Random Forests |

rfml | MarkLogic NoSQL Database Server in-Database Analytics for R |

Rfmtool | Fuzzy Measure Tools for R |

rfoaas | R Interface to FOAAS |

RFOC | Graphics for Spherical Distributions and Earthquake Focal Mechanisms |

RForcecom | Data Integration Feature for Force.com and Salesforce.com |

rfordummies | Code Examples to Accompany the Book "R for Dummies" |

rforensicbatwing | BATWING for calculating forensic trace-suspect match probabilities |

RFormatter | R Source Code Formatter |

rfPermute | Estimate Permutation p-Values for Random Forest Importance Metrics |

RFreak | R/FrEAK interface |

rfUtilities | Random Forests Model Selection and Performance Evaluation |

RGA | A Google Analytics API Client |

rgabriel | Gabriel Multiple Comparison Test and Plot the Confidence Interval on Barplot |

rgam | Robust Generalized Additive Model |

rGammaGamma | Gamma convolutions for methylation array background correction |

rgbif | Interface to the Global 'Biodiversity' Information Facility 'API' |

Rgbp | Hierarchical Modeling and Frequency Method Checking on Overdispersed Gaussian, Poisson, and Binomial Data |

RGCCA | RGCCA and Sparse GCCA for multi-block data analysis |

rgcvpack | R Interface for GCVPACK Fortran Package |

rgdal | Bindings for the Geospatial Data Abstraction Library |

RGENERATE | Tools To Generate Vector Time Series |

RGENERATEPREC | Tools To Generate Daily-Precipitation Time Series |

RGenetics | R packages for genetics research |

rgenoud | R Version of GENetic Optimization Using Derivatives |

rgeolocate | IP Address Geolocation |

rgeos | Interface to Geometry Engine - Open Source (GEOS) |

rgexf | Build, Import and Export GEXF Graph Files |

rggobi | Interface between R and GGobi |

rgho | Access WHO Global Health Observatory Data from R |

RGIFT | Create quizzes in GIFT Format |

rgl | 3D Visualization Using OpenGL |

rglobi | R Interface to Global Biotic Interactions |

Rglpk | R/GNU Linear Programming Kit Interface |

rglwidget | 'rgl' in 'htmlwidgets' Framework |

Rgnuplot | R Interface for Gnuplot |

RGoogleAnalytics | R Wrapper for the Google Analytics API |

RGoogleAnalyticsPremium | Unsampled Data in R for Google Analytics Premium Accounts |

RGoogleFit | R Interface to Google Fit API |

RgoogleMaps | Overlays on Google map tiles in R |

rgp | R genetic programming framework |

rgpui | UI for the RGP genetic programming framework |

rgr | Applied Geochemistry EDA |

RGraphics | Data and Functions from the Book R Graphics, Second Edition |

rgrass7 | Interface Between GRASS 7 Geographical Information System and R |

rGroovy | Groovy Language Integration |

RGtk2 | R bindings for Gtk 2.8.0 and above |

RGtk2Extras | Data frame editor and dialog making wrapper for RGtk2 |

RH2 | DBI/RJDBC interface to h2 Database |

rhandsontable | Interface to the 'Handsontable.js' Library |

rHealthDataGov | Retrieve data sets from the HealthData.gov data API |

rhosp | Side Effect Risks in Hospital : Simulation and Estimation |

Rhpc | Permits *apply() Style Dispatch for 'HPC' |

RhpcBLASctl | Control the Number of Threads on 'BLAS' |

rHpcc | Interface between HPCC and R |

RHRV | Heart rate variability analysis of ECG data |

RHT | Regularized Hotelling's T-square Test for Pathway (Gene Set) Analysis |

R.huge | Methods for Accessing Huge Amounts of Data [deprecated] |

ri | ri: R package for performing randomization-based inference for experiments |

RI2by2 | Randomization inference for treatment effects on a binary outcome |

riceware | A Diceware Passphrase Implementation |

rich | Computes and compares species richnesses |

RidgeFusion | R Package for Ridge Fusion in Statistical Learning |

ridigbio | Interface to the iDigBio Data API |

Ridit | Ridit Analysis (An extension of the Kruskal-Wallis Test.) |

RIFS | Random Iterated Function System (RIFS) |

RImageJROI | Read 'ImageJ' Region of Interest (ROI) Files |

RImagePalette | Extract the Colors from Images |

RImpala | Using Cloudera 'Impala' Through 'R' |

rinat | Access iNaturalist data through APIs |

rindex | Indexing for R |

RInside | C++ Classes to Embed R in C++ Applications |

RInSp | R Individual Specialization (RInSp) |

rio | A Swiss-Army Knife for Data I/O |

rioja | Analysis of Quaternary Science Data |

Rip46 | Utils for IP4 and IP6 Addresses |

ripa | R Image Processing and Analysis |

riskR | Risk Management |

riskRegression | Risk Regression Models for Survival Analysis with Competing Risks |

risksetROC | Riskset ROC curve estimation from censored survival data |

riskSimul | Risk Quantification for Stock Portfolios under the T-Copula Model |

RISmed | Download Content from NCBI Databases |

Ritc | Isothermal Titration Calorimetry (ITC) Data Analysis |

rite | The Right Editor to Write R |

RItools | Randomization Inference Tools |

riv | Robust instrumental variables estimator |

rivernet | Read, Analyze and Plot River Networks |

riverplot | Sankey or Ribbon Plots |

rivervis | River Visualisation Tool |

Rivivc | In vitro in vivo correlation linear level A |

rivr | Steady and Unsteady Open-Channel Flow Computation |

RJaCGH | Reversible Jump MCMC for the Analysis of CGH Arrays |

rjade | A Clean, Whitespace-Sensitive Template Language for Writing HTML |

RJafroc | Analysis of Data Acquired Using the Receiver Operating Characteristic Paradigm and Its Extensions |

rjags | Bayesian Graphical Models using MCMC |

rJava | Low-Level R to Java Interface |

RJDBC | Provides access to databases through the JDBC interface |

rje | Miscellaneous useful functions |

r.jive | Perform JIVE Decompositions for Multi-Source Data |

rJPSGCS | R-interface to Gene Drop Simulation from JPSGCS |

Rjpstatdb | R interface of the Gateway to Advanced and User-friendly Statistics Service |

RJSDMX | R Interface to SDMX Web Services |

rjson | JSON for R |

RJSONIO | Serialize R objects to JSON, JavaScript Object Notation |

rjstat | Read and Write 'JSON-stat' Data Sets |

rJython | R interface to Python via Jython |

rkafka | Using Apache 'Kafka' Messaging Queue Through 'R' |

rkafkajars | External Jars Required for Package 'rkafka' |

RKEA | R/KEA Interface |

RKEAjars | R/KEA Interface Jars |

RKEEL | Using Keel in R Code |

RKEELdata | Datasets from KEEL for it Use in RKEEL |

RKEELjars | Java Executable .jar Files for 'RKEEL' |

RKlout | Fetch Klout Scores for Twitter Users |

rknn | Random KNN Classification and Regression |

Rknots | Topological Analysis of Knotted Proteins, Biopolymers and 3D Structures |

rkt | Mann-Kendall Test, Seasonal and Regional Kendall Tests |

rkvo | Read Key/Value Pair Observations |

Rlab | Functions and Datasets Required for ST370 class |

Rlabkey | Data Exchange Between R and LabKey Server |

rLakeAnalyzer | Lake Physics Tools |

rleafmap | Interactive Maps with R and Leaflet |

rlecuyer | R Interface to RNG with Multiple Streams |

Rlibeemd | Ensemble Empirical Mode Decomposition (EEMD) and Its Complete Variant (CEEMDAN) |

rLiDAR | LiDAR Data Processing and Visualization |

rLindo | R Interface to LINDO API |

Rlinkedin | Access to the LinkedIn API via R |

rlist | A Toolbox for Non-Tabular Data Manipulation |

rlm | Robust Fitting of Linear Model |

Rlof | R Parallel Implementation of Local Outlier Factor(LOF) |

RLogicalOps | Process Logical Operations |

RLRsim | Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive Models |

rLTP | R Interface to LTP-Cloud Service |

RLumModel | Modelling Ordinary Differential Equations Leading to Luminescence |

RLumShiny | 'Shiny' Applications for the R Package 'Luminescence' |

RM2 | Revenue Management and Pricing Package |

rmaf | Refined Moving Average Filter |

RMallow | Fit Multi-Modal Mallows' Models to ranking data |

Rmalschains | Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) in R |

RMark | R Code for Mark Analysis |

rmarkdown | Dynamic Documents for R |

rmatio | Read and Write Matlab Files |

R.matlab | Read and Write MAT Files and Call MATLAB from Within R |

RMAWGEN | Multi-site Auto-regressive Weather GENerator |

RMC | Functions for fitting Markov models |

rmcfs | The MCFS-ID Algorithm for Feature Selection and Interdependency Discovery |

rmdformats | HTML Output Formats and Templates for 'rmarkdown' Documents |

rmdHelpers | Helper Functions for Rmd Documents |

rmdshower | 'R' 'Markdown' Format for 'shower' Presentations |

RMediation | Mediation Analysis Confidence Intervals |

rmeta | Meta-analysis |

rmetasim | An Individual-Based Population Genetic Simulation Environment |

R.methodsS3 | S3 Methods Simplified |

rmgarch | Multivariate GARCH Models |

rminer | Data Mining Classification and Regression Methods |

Rmisc | Rmisc: Ryan Miscellaneous |

Rmixmod | An Interface for MIXMOD |

RmixmodCombi | Combining Mixture Components for Clustering |

RMixpanel | R API for Mixpanel |

RMKdiscrete | Sundry Discrete Probability Distributions |

rmngb | Miscellaneous Collection of Functions for Medical Data Analysis |

RMOA | Connect R with MOA for Massive Online Analysis |

RMOAjars | External jars required for package RMOA |

RMongo | MongoDB Client for R |

rmongodb | R-MongoDB driver |

Rmonkey | A Survey Monkey R Client |

Rmosek | The R-to-MOSEK Optimization Interface |

rmp | Rounded Mixture Package. Performs Probability Mass Function Estimation with Nonparametric Mixtures of Rounded Kernels |

Rmpfr | R MPFR - Multiple Precision Floating-Point Reliable |

Rmpi | Interface (Wrapper) to MPI (Message-Passing Interface) |

RMRAINGEN | RMRAINGEN (R Multi-site RAINfall GENeretor): a package to generate daily time series of rainfall from monthly mean values |

rms | Regression Modeling Strategies |

rmsfact | Amazing Random Facts About the World's Greatest Hacker |

rms.gof | Root-mean-square goodness-of-fit test for simple null hypothesis |

RMTstat | Distributions, Statistics and Tests derived from Random Matrix Theory |

rmumps | Wrapper for MUMPS Library |

RMySQL | Database Interface and 'MySQL' Driver for R |

rnaseqWrapper | Wrapper for several R packages and scripts to automate RNA-seq analysis |

RnavGraph | Using Graphs as a Navigational Infrastructure |

RnavGraphImageData | Some image data used in the RnavGraph package demos |

RNaviCell | Visualization of High-Throughput Data on Large-Scale Biological Networks |

rnbn | Access NBN Data |

RNCBIEUtilsLibs | EUtils libraries for use in the R environment |

RNCEP | Obtain, Organize, and Visualize NCEP Weather Data |

rncl | An Interface to the Nexus Class Library |

RND | Risk Neutral Density Extraction Package |

RndTexExams | Build and Grade Multiple Choice Exams with Randomized Content |

RNeo4j | Neo4j Driver for R |

rneos | XML-RPC Interface to NEOS |

rnetcarto | Fast Network Modularity and Roles Computation by Simulated Annealing (Rgraph C Library Wrapper for R) |

RNetCDF | Interface to NetCDF Datasets |

RNetLogo | Provides an Interface to the Agent-Based Modelling Platform NetLogo |

RNewsflow | Tools for Analyzing Content Homogeneity and News Diffusion using Computational Text Analysis |

RNeXML | Semantically Rich I/O for the 'NeXML' Format |

rngSetSeed | Seeding the Default RNG with a Numeric Vector |

rngtools | Utility functions for working with Random Number Generators |

rngWELL | Toolbox for WELL Random Number Generators |

rngwell19937 | Random number generator WELL19937a with 53 or 32 bit output |

RNiftyReg | Image Registration Using the NiftyReg Library |

rNMF | Robust Nonnegative Matrix Factorization |

rnn | Recurrent Neural Network |

rnoaa | 'NOAA' Weather Data from R |

rNOMADS | An Interface to the NOAA Operational Model Archive and Distribution System |

rnpn | Interface to the National 'Phenology' Network 'API' |

rnrfa | UK National River Flow Archive Data from R |

roahd | Robust Analysis of High Dimensional Data |

ROAuth | R Interface For OAuth |

RobAStBase | Robust Asymptotic Statistics |

RobAStRDA | Interpolation Grids for Packages of the 'RobASt' - Family of Packages |

robCompositions | Robust Estimation for Compositional Data |

robcor | Robust Correlations |

robeth | R functions for robust statistics |

robfilter | Robust Time Series Filters |

RobLox | Optimally robust influence curves and estimators for location and scale |

RobLoxBioC | Infinitesimally robust estimators for preprocessing omics data |

robotstxt | A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler' Permissions Checker |

RobPer | Robust Periodogram and Periodicity Detection Methods |

robreg3S | Three-Step Regression and Inference for Cellwise and Casewise Contamination |

RobRex | Optimally robust influence curves for regression and scale |

RobRSVD | Robust Regularized Singular Value Decomposition |

RObsDat | Data Management for Hydrology and Beyond Using the Observations Data Model |

robumeta | Robust Variance Meta-Regression |

robust | Robust Library |

RobustAFT | Truncated Maximum Likelihood Fit and Robust Accelerated Failure Time Regression for Gaussian and Log-Weibull Case |

robustbase | Basic Robust Statistics |

robustDA | Robust Mixture Discriminant Analysis |

RobustEM | Robust Mixture Modeling Fitted via Spatial-EM Algorithm for Model-Based Clustering and Outlier Detection |

robustETM | Robust Methods using Exponential Tilt Model |

robustfa | An Object Oriented Solution for Robust Factor Analysis |

robustgam | Robust Estimation for Generalized Additive Models |

robustHD | Robust Methods for High-Dimensional Data |

robustlmm | Robust Linear Mixed Effects Models |

robustloggamma | Robust Estimation of the Generalized log Gamma Model |

RobustRankAggreg | Methods for robust rank aggregation |

robustrao | An Extended Rao-Stirling Diversity Index to Handle Missing Data |

robustreg | Robust Regression Functions |

robustvarComp | Robust Estimation of Variance Component Models |

robustX | eXperimental Functionality for Robust Statistics |

ROC632 | Construction of diagnostic or prognostic scoring system and internal validation of its discriminative capacities based on ROC curve and 0.633+ boostrap resampling |

rocc | ROC based classification |

rockchalk | Regression Estimation and Presentation |

RockFab | Rock fabric and strain analysis tools |

rococo | Robust Rank Correlation Coefficient and Test |

ROCR | Visualizing the Performance of Scoring Classifiers |

ROCS | Receiver Operating Characteristics Surface |

ROCt | Time-Dependent ROC Curve Estimators and Expected Utility Functions |

ROCwoGS | Non-parametric estimation of ROC curves without Gold Standard Test |

RODBC | ODBC Database Access |

RODBCDBI | Provides Access to Databases Through the ODBC Interface |

RODBCext | Parameterized Queries Extension for RODBC |

rodd | Optimal Discriminating Designs |

rodeo | A Code Generator for ODE-Based Models |

rodham | Fetch Hillary Rodham Clinton's Emails |

RODM | R interface to Oracle Data Mining |

ROI | R Optimization Infrastructure |

ROI.plugin.glpk | ROI-plugin GLPK |

ROI.plugin.quadprog | ROI-plugin quadprog |

ROI.plugin.symphony | ROI-plugin symphony |

roll | Rolling Statistics |

rollbar | Error Tracking and Logging |

rollply | Moving-Window Add-on for 'plyr' |

ROMIplot | Plots Surfaces of Rates of Mortality Improvement |

R.oo | R Object-Oriented Programming with or without References |

Rook | Rook - a web server interface for R |

RootsExtremaInflections | Finds roots, extrema and inflection points of a curve |

rootSolve | Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations |

ropensecretsapi | R Package for the OpenSecrets.org API |

ROpenWeatherMap | R Interface to OpenWeatherMap API |

ROptEst | Optimally robust estimation |

ROptEstOld | Optimally robust estimation - old version |

ROptimizely | R Optimizely API |

ROptRegTS | Optimally robust estimation for regression-type models |

ror | Robust Ordinal Regression MCDA library |

ROracle | OCI Based Oracle Database Interface for R |

rorcid | Interface to the 'Orcid.org' 'API' |

rorutadis | Robust Ordinal Regression UTADIS |

ROSE | ROSE: Random Over-Sampling Examples |

rosetteApi | Rosette API |

rosm | Plot Raster Map Tiles from Open Street Map and Other Sources |

rotationForest | Fit and Deploy Rotation Forest Models |

rotations | Tools for Working with Rotation Data |

Rothermel | Rothermel fire spread model for R |

rotl | Interface to the 'Open Tree of Life' API |

roughrf | Roughened Random Forests for Binary Classification |

RoughSetKnowledgeReduction | Simplification of Decision Tables using Rough Sets |

RoughSets | Data Analysis Using Rough Set and Fuzzy Rough Set Theories |

rowr | Row-Based Functions for R Objects |

roxygen2 | In-Source Documentation for R |

royston | Royston's H Test: Multivariate Normality Test |

RPANDA | Phylogenetic ANalyses of DiversificAtion |

rpanel | Simple interactive controls for R using the tcltk library |

rpart | Recursive Partitioning and Regression Trees |

rpartitions | Code for integer partitioning |

rpart.plot | Plot 'rpart' Models: An Enhanced Version of 'plot.rpart' |

rpartScore | Classification trees for ordinal responses |

rpart.utils | Tools for parsing and manipulating rpart objects, including generating machine readable rules |

rpca | RobustPCA: Decompose a Matrix into Low-Rank and Sparse Components |

rpcdsearch | Tools for the Construction of Clinical Code Lists for Primary Care Database Studies |

RPCLR | RPCLR (Random-Penalized Conditional Logistic Regression) |

Rpdb | Read, write, visualize and manipulate PDB files |

rpdo | Pacific Decadal Oscillation Index Data |

RPEnsemble | Random Projection Ensemble Classification |

rpf | Response Probability Functions |

rpg | Easy Interface to Advanced PostgreSQL Features |

rphast | Interface to PHAST Software for Comparative Genomics |

Rphylip | An R interface for PHYLIP |

Rphylopars | Phylogenetic Comparative Tools for Missing Data and Within-Species Variation |

rPlant | Interface to the Agave API |

rplexos | Read and Analyze 'PLEXOS' Solutions |

rplos | Interface to the Search 'API' for 'PLoS' Journals |

rplotengine | R as a plotting engine |

RPMG | Graphical User Interface (GUI) for Interactive R Analysis Sessions |

RPMM | Recursively Partitioned Mixture Model |

rpnf | Point and Figure Package |

Rpoppler | PDF Tools Based on Poppler |

rportfolios | Random portfolio generation |

RPostgreSQL | R interface to the PostgreSQL database system |

rPowerSampleSize | Sample Size Computations Controlling the Type-II Generalized Family-Wise Error Rate |

RPPairwiseDesign | Resolvable partially pairwise balanced design and Space-filling design via association scheme |

RPPanalyzer | Reads, Annotates, and Normalizes Reverse Phase Protein Array Data |

rPref | Database Preferences and Skyline Computation |

RPresto | DBI Connector to Presto |

rprime | Functions for Working with 'Eprime' Text Files |

rprintf | Adaptive Builder for Formatted Strings |

rprojroot | Finding Files in Project Subdirectories |

RProtoBuf | R Interface to the Protocol Buffers API |

rpsychi | Statistics for psychiatric research |

rpubchem | rpubchem - Interface to the PubChem Collection |

RPublica | ProPublica API Client |

RPushbullet | R Interface to the Pushbullet Messaging Service |

RPyGeo | ArcGIS Geoprocessing in R via Python |

rPython | Package Allowing R to Call Python |

RQDA | R-based Qualitative Data Analysis |

rqPen | Penalized Quantile Regression |

Rquake | Seismic Hypocenter Determination |

RQuantLib | R Interface to the 'QuantLib' Library |

rr | Statistical Methods for the Randomized Response Technique |

Rramas | Matrix population models |

rrBLUP | Ridge Regression and Other Kernels for Genomic Selection |

rrBlupMethod6 | Re-parametrization of RR-BLUP to allow for a fixed residual variance |

rrcov | Scalable Robust Estimators with High Breakdown Point |

rrcovHD | Robust Multivariate Methods for High Dimensional Data |

rrcovNA | Scalable Robust Estimators with High Breakdown Point for Incomplete Data |

Rrdrand | 'DRNG' on Intel CPUs with the 'RdRand' Instruction for R |

rrecsys | Environment for Assessing Recommender Systems |

rredis | "Redis" Key/Value Database Client |

rredlist | 'IUCN' Red List Client |

rrefine | R Client for OpenRefine API |

rrepast | Invoke 'Repast Simphony' Simulation Models |

RRF | Regularized Random Forest |

rriskDistributions | Fitting Distributions to Given Data or Known Quantiles |

rrlda | Robust Regularized Linear Discriminant Analysis |

RRNA | Secondary Structure Plotting for RNA |

RRreg | Correlation and Regression Analyses for Randomized Response Data |

R.rsp | Dynamic Generation of Scientific Reports |

RRTCS | Randomized Response Techniques for Complex Surveys |

RSA | Response Surface Analysis |

RSADBE | Data related to the book "R Statistical Application Development by Example" |

rsae | Robust Small Area Estimation |

RSAGA | SAGA Geoprocessing and Terrain Analysis in R |

RSAgeo | Resampling-Based Analysis of Geostatistical Data |

Rsampletrees | Sampletrees Input/Output Processing |

RSAP | SAP Netweaver RFC connector for R |

rSARP | Functions to Create and Evaluate Search and Rescue Plans |

rsatscan | Tools, Classes, and Methods for Interfacing with SaTScan Stand-Alone Software |

rSCA | An R Package for Stepwise Cluster Analysis |

rscala | Bi-Directional Interface Between R and Scala with Callbacks |

rscimark | SciMark 2.0 Benchmark for Scientific and Numerical Computing |

RSclient | Client for Rserve |

rsconnect | Deployment Interface for R Markdown Documents and Shiny Applications |

rscopus | Scopus Database API Interface |

rscorecard | A Method to Download Department of Education College Scorecard Data |

rscproxy | statconn: provides portable C-style interface to R (StatConnector) |

RSDA | R to Symbolic Data Analysis |

rsdepth | Ray Shooting Depth (i.e. RS Depth) functions for bivariate analysis |

rsdmx | Tools for Reading SDMX Data and Metadata |

RSeed | borenstein analysis |

rseedcalc | Estimating the Proportion of Genetically Modified Seeds in Seedlots via Multinomial Group Testing |

RSEIS | Seismic Time Series Analysis Tools |

RSelenium | R bindings for Selenium WebDriver |

rsem | Robust Structural Equation Modeling with Missing Data and Auxiliary Variables |

RSentiment | Analyse Sentiment of English Sentences |

Rserve | Binary R server |

rSFA | Slow Feature Analysis in R |

rsgcc | Gini methodology-based correlation and clustering analysis of microarray and RNA-Seq gene expression data |

rsggm | Robust Sparse Gaussian Graphical Modeling via the Gamma-Divergence |

RSGHB | Functions for Hierarchical Bayesian Estimation: A Flexible Approach |

RSiena | Siena - Simulation Investigation for Empirical Network Analysis |

rsig | Robust Signature Selection for Survival Outcomes |

RsimMosaic | R Simple IMage Mosaic creation library |

RSiteCatalyst | R Client for Adobe Analytics API V1.4 |

RSKC | Robust sparse K-means |

rsm | Response-Surface Analysis |

RSMET | Get Real-Time Meteorological Data in SMET Format |

rsml | Plant Root System Markup Language (RSML) File Processing |

RSNNS | Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS) |

rsnps | Get SNP (Single-Nucleotide Polymorphism) Data on the Web |

RSNPset | Efficient Score Statistics for Genome-Wide SNP Set Analysis |

RSocrata | Download or Upload 'Socrata' Data Sets |

RSofia | Port of sofia-ml (http://code.google.com/p/sofia-ml/) to R |

Rsolnp | General Non-Linear Optimization |

Rsomoclu | Somoclu |

rspa | Adapt Numerical Records to Fit (in)Equality Restrictions |

rSPACE | Spatially-Explicit Power Analysis for Conservation and Ecology |

RSpectra | Solvers for Large Scale Eigenvalue and SVD Problems |

RSpincalc | Conversion Between Attitude Representations of DCM, Euler Angles, Quaternions, and Euler Vectors |

RSPS | RNA-Seq Power Simulation |

RSQLite | SQLite Interface for R |

RSQLServer | SQL Server R Database Interface (DBI) and dplyr SQL Backend |

Rssa | A Collection of Methods for Singular Spectrum Analysis |

rstackdeque | Persistent Fast Amortized Stack and Queue Data Structures |

rstan | R Interface to Stan |

rstanarm | Bayesian Applied Regression Modeling via Stan |

RStars | Access to the Digital Universe Data set API |

RStata | A Bit of Glue Between R and Stata |

rstatscn | R Interface for China National Data |

rstiefel | Random orthonormal matrix generation on the Stiefel manifold |

RStoolbox | Tools for Remote Sensing Data Analysis |

RStorm | Simulate and Develop Streaming Processing in [R] |

rstpm2 | Generalized Survival Models |

rstream | Streams of Random Numbers |

rstudioapi | Safely Access the RStudio API |

rsubgroup | Subgroup Discovery and Analytics |

Rsundials | Suite of Nonlinear Differential Algebraic Equations Solvers in R |

rsunlight | Interface to 'Sunlight' Foundation 'APIs' |

Rsurrogate | Robust Estimation of the Proportion of Treatment Effect Explained by Surrogate Marker Information |

RSurveillance | Design and Analysis of Disease Surveillance Activities |

RSurvey | Analysis of Spatially Distributed Data |

rsvd | Randomized Singular Value Decomposition |

rsvg | Render SVG Images into PDF, PNG, PostScript, or Bitmap Arrays |

RSvgDevice | An R SVG graphics device |

RSVGTipsDevice | An R SVG graphics device with dynamic tips and hyperlinks |

Rsymphony | SYMPHONY in R |

rSymPy | R interface to SymPy computer algebra system |

rtable | Tabular Reporting Functions |

rTableICC | Random Generation of Contingency Tables |

rtape | Manage and manipulate large collections of R objects stored as tape-like files |

RTConnect | Tools for analyzing sales report files of iTunes Connect |

RTDE | Robust Tail Dependence Estimation |

rtdists | Response Time Distributions |

rtematres | The rtematres API package |

rTensor | Tools for Tensor Analysis and Decomposition |

RTextTools | Automatic Text Classification via Supervised Learning |

RTextureMetrics | Functions for calculation of texture metrics for Grey Level Co-occurrence Matrices |

rtf | Rich Text Format (RTF) Output |

rtfbs | Transcription Factor Binding Site Identification Tool |

rticles | Article Formats for R Markdown |

rtiff | Read and Write TIFF Files |

rtimes | Client for New York Times 'APIs' |

rtkore | STK++ Core Library Integration to R using Rcpp |

rtkpp | STK++ Integration to R using Rcpp |

RTOMO | Visualization for Seismic Tomography |

rtop | Interpolation of Data with Variable Spatial Support |

RTriangle | Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator |

rts | Raster Time Series Analysis |

Rtsne | T-Distributed Stochastic Neighbor Embedding using Barnes-Hut Implementation |

rtson | Typed JSON |

Rttf2pt1 | 'ttf2pt1' Program |

Rtts | Convert Text into Speech |

RtutoR | Tutorial App for Learning R |

Rtwalk | The R Implementation of the 't-walk' MCMC Algorithm |

rtype | A strong type system for R |

rtypeform | Interface to 'typeform' Results |

Ruchardet | R package to detect character encoding |

rucm | Implementation of Unobserved Components Model (UCM) |

rugarch | Univariate GARCH Models |

rUnemploymentData | Data and Functions for USA State and County Unemployment Data |

RUnit | R Unit Test Framework |

runittotestthat | Convert 'RUnit' Test Functions into 'testthat' Tests |

Runiversal | Runiversal - Package for converting R objects to Java variables and XML |

runjags | Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS |

Runuran | R Interface to the UNU.RAN Random Variate Generators |

RunuranGUI | A GUI for the UNU.RAN random variate generators |

rusda | Interface to USDA Databases |

R.utils | Various Programming Utilities |

ruv | Detect and Remove Unwanted Variation using Negative Controls |

rv | Simulation-based random variable objects |

RVAideMemoire | Diverse Basic Statistical and Graphical Functions |

rvalues | R-Values for Ranking in High-Dimensional Settings |

Rvcg | Manipulations of Triangular Meshes Based on the 'VCGLIB' API |

rversions | Query 'R' Versions, Including 'r-release' and 'r-oldrel' |

rvertnet | Search 'Vertnet', a 'Database' of Vertebrate Specimen Records |

rvest | Easily Harvest (Scrape) Web Pages |

RVFam | Rare Variants Association Analyses with Family Data |

rvg | R Graphics Devices for Vector Graphics Output |

rvgtest | Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators |

rvHPDT | Calling haplotype-based and variant-based pedigree disequilibrium test for rare variants in pedigrees |

RVideoPoker | Play Video Poker with R |

RViennaCL | ViennaCL C++ Header Files |

Rvmmin | Variable Metric Nonlinear Function Minimization |

RVowpalWabbit | R interface to the Vowpal Wabbit |

RVPedigree | Methods for Family-Based Rare-Variant Genetic Association Tests |

RVsharing | Probability of Sharing Rare Variants among Relatives |

rvTDT | population control weighted rare-variants TDT |

RVtests | Rare Variant Tests |

Rwave | Time-Frequency Analysis of 1-D Signals |

rWBclimate | A package for accessing World Bank climate data |

RWBP | Detects spatial outliers using a Random Walk on Bipartite Graph |

RWebLogo | plotting custom sequence logos |

RWeka | R/Weka Interface |

RWekajars | R/Weka Interface Jars |

rwfec | R Wireless, Forward Error Correction |

RWiener | Wiener process distribution functions |

RWinEdt | R Interface to WinEdt |

Rwinsteps | Running Winsteps in R |

rwirelesscom | Basic Wireless Communications Simulation |

rworldmap | Mapping Global Data |

rworldxtra | Country boundaries at high resolution |

rwt | Rice Wavelet Toolbox wrapper |

rwunderground | R Interface to Weather Underground API |

RxCEcolInf | R x C Ecological Inference With Optional Incorporation of Survey Information |

RXKCD | Get XKCD comic from R |

RXMCDA | Functions to Parse and Create XMCDA Files |

RxnSim | Functions to Compute Chemical Reaction Similarity |

RxODE | Facilities for Simulating from ODE-Based Models |

RXshrink | Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression |

Ryacas | R Interface to the Yacas Computer Algebra System |

RYandexTranslate | R Interface to Yandex Translate API |

RYoudaoTranslate | R package provide functions to translate English words into Chinese |

ryouready | Companion to the Forthcoming Book - R you Ready? |

rYoutheria | Access to the YouTheria Mammal Trait Database |

rysgran | Grain size analysis, textural classifications and distribution of unconsolidated sediments |

Rz | GUI Tool for Data Management like SPSS or Stata |

RZabbix | R Module for Working with the 'Zabbix API' |

rzmq | R Bindings for ZeroMQ |

s20x | Functions for University of Auckland Course STATS 201/208 Data Analysis |

s2dverification | Set of Common Tools for Forecast Verification |

S2sls | Spatial Two Stage Least Squares Estimation |

s4vd | Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection |

saasCNV | Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data |

Sabermetrics | Sabermetrics Functions for Baseball Analytics |

sac | Semiparametric Analysis of Changepoint |

saccades | Detection of Fixations in Eye-Tracking Data |

SACCR | SA Counterparty Credit Risk under Basel III |

SACOBRA | Self-Adjusting COBRA |

sadists | Some Additional Distributions |

sads | Maximum Likelihood Models for Species Abundance Distributions |

sae | Small Area Estimation |

sae2 | Small Area Estimation: Time-series Models |

saemix | Stochastic Approximation Expectation Maximization (SAEM) algorithm |

SAENET | A Stacked Autoencoder Implementation with Interface to 'neuralnet' |

saeRobust | Robust Small Area Estimation |

saery | Small Area Estimation for Rao and Yu Model |

saeSim | Simulation Tools for Small Area Estimation |

SAFD | Statistical Analysis of Fuzzy Data |

SafeBayes | Generalized and Safe-Bayesian Ridge and Lasso Regression |

safeBinaryRegression | Safe Binary Regression |

SafeQuant | A Toolbox for the Analysis of Proteomics Data |

safi | Sensitivity Analysis for Functional Input |

SAGA | Software for the Analysis of Genetic Architecture |

SALES | Elastic Net and (Adaptive) Lasso Penalized Sparse Asymmetric Least Squares (SALES) and Coupled Sparse Asymmetric Least Squares (COSALES) using Coordinate Descent and Proximal Gradient Algorithms |

SALTSampler | Efficient Sampling on the Simplex |

SAM | Sparse Additive Modelling |

SAMM | Some Algorithms for Mixed Models |

SamplerCompare | A Framework for Comparing the Performance of MCMC Samplers |

sampleSelection | Sample Selection Models |

samplesize | Sample Size Calculation for Various t-Tests and Wilcoxon-Test |

Sample.Size | Sample size calculation |

samplesize4surveys | Sample Size Calculations for Complex Surveys |

SampleSizeMeans | Sample size calculations for normal means |

SampleSizeProportions | Calculating sample size requirements when estimating the difference between two binomial proportions |

sampling | Survey Sampling |

samplingbook | Survey Sampling Procedures |

samplingEstimates | Sampling Estimates |

SamplingStrata | Optimal Stratification of Sampling Frames for Multipurpose Sampling Surveys |

samplingVarEst | Sampling Variance Estimation |

sampSurf | Sampling Surface Simulation for Areal Sampling Methods |

samr | SAM: Significance Analysis of Microarrays |

SAMUR | Stochastic Augmentation of Matched Data Using Restriction Methods |

SAMURAI | Sensitivity Analysis of a Meta-analysis with Unpublished but Registered Analytical Investigations |

sand | Statistical Analysis of Network Data with R |

sandwich | Robust Covariance Matrix Estimators |

sanitizers | C/C++ source code to trigger Address and Undefined Behaviour Sanitizers |

sankey | Sankey Diagrams |

sanon | Stratified Analysis with Nonparametric Covariable Adjustment |

sapa | Spectral Analysis for Physical Applications |

SAPP | Statistical Analysis of Point Processes |

sas7bdat | SAS Database Reader (experimental) |

SAScii | Import ASCII files directly into R using only a SAS input script |

SASmixed | Data sets from "SAS System for Mixed Models" |

SASPECT | Significant AnalysiS of PEptide CounTs |

SASxport | Read and Write 'SAS' 'XPORT' Files |

satellite | Various Functions for Handling and Manipulating Remote Sensing Data |

saturnin | Spanning Trees Used for Network Inference |

SAVE | Bayesian Emulation, Calibration and Validation of Computer Models |

saves | Fast load variables |

saws | Small-Sample Adjustments for Wald tests Using Sandwich Estimators |

sBF | Smooth Backfitting |

sbgcop | Semiparametric Bayesian Gaussian copula estimation and imputation |

sbioPN | sbioPN: Simulation of deterministic and stochastic spatial biochemical reaction networks using Petri Nets |

sbmSDP | Semidefinite Programming for Fitting Block Models of Equal Block Sizes |

SBRect | Detecting structural breaks using rectangle covering (non-parametric method) |

SBSA | Simplified Bayesian Sensitivity Analysis |

sca | Simple Component Analysis |

scagnostics | Compute scagnostics - scatterplot diagnostics |

Scale | Likert Type Questionnaire Item Analysis |

scales | Scale Functions for Visualization |

scalreg | Scaled sparse linear regression |

scam | Shape Constrained Additive Models |

scape | Statistical Catch-at-Age Plotting Environment |

scar | Shape-Constrained Additive Regression: a Maximum Likelihood Approach |

scaRabee | Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models |

scatterD3 | D3 JavaScript Scatterplot from R |

scatterplot3d | 3D Scatter Plot |

SCBmeanfd | Simultaneous Confidence Bands for the Mean of Functional Data |

scenario | Construct Reduced Trees with Predefined Nodal Structures |

SCEPtER | Stellar CharactEristics Pisa Estimation gRid |

SCEPtERbinary | Stellar CharactEristics Pisa Estimation gRid for Binary Systems |

SCGLR | Supervised Component Generalized Linear Regression |

SchemaOnRead | Automated Schema on Read |

scholar | Analyse Citation Data from Google Scholar |

schoolmath | Functions and datasets for math used in school |

schoRsch | Tools for Analyzing Factorial Experiments |

schumaker | Schumaker Shape-Preserving Spline |

schwartz97 | A package on the Schwartz two-factor commodity model |

SCI | Standardized Climate Indices Such as SPI, SRI or SPEI |

scidb | An R Interface to SciDB |

SciencesPo | A Tool Set for Analyzing Political Behavior Data |

scio | Sparse Column-wise Inverse Operator |

sciplot | Scientific Graphing Functions for Factorial Designs |

SciViews | SciViews GUI API - Main package |

sclero | Measure Growth Patterns and Align Sampling Spots in Photographs |

SCMA | Single-Case Meta-Analysis |

scmamp | Statistical Comparison of Multiple Algorithms in Multiple Problems |

score | A Package to Score Behavioral Questionnaires |

ScoreGGUM | Score Persons Using the Generalized Graded Unfolding Model |

scorer | Quickly Score Models in Data Science and Machine Learning |

SCORER2 | SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences |

scoring | Proper scoring rules |

ScottKnott | The ScottKnott Clustering Algorithm |

scout | Implements the Scout Method for Covariance-Regularized Regression |

SCperf | Supply Chain Perform |

ScrabbleScore | Calculates Scrabble score for strings |

scrapeR | Tools for Scraping Data from HTML and XML Documents |

ScreenClean | Screen and clean variable selection procedures |

scrime | Analysis of High-Dimensional Categorical Data such as SNP Data |

scriptests | Transcript-Based Unit Tests that are Easy to Create and Maintain |

scrm | Simulating the Evolution of Biological Sequences |

SCRT | Single-Case Randomization Tests |

scrubr | Clean Biological Occurrence Records |

scrypt | scrypt key derivation functions for R |

scs | Splitting Conic Solver |

scuba | Diving Calculations and Decompression Models |

SCVA | Single-Case Visual Analysis |

sda | Shrinkage Discriminant Analysis and CAT Score Variable Selection |

SDaA | Sampling: Design and Analysis |

sdat | Signal Detection via Adaptive Test |

sdcMicro | Statistical Disclosure Control Methods for Anonymization of Microdata and Risk Estimation |

sdcMicroGUI | Graphical User Interface for Package 'sdcMicro' |

sdcTable | Methods for Statistical Disclosure Control in Tabular Data |

sdcTarget | Statistical Disclosure Control Substitution Matrix Calculator |

SDD | Serial Dependence Diagrams |

SDDE | Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome Similarity Networks |

sddpack | Semidiscrete Decomposition |

sde | Simulation and Inference for Stochastic Differential Equations |

sdef | Synthesizing List of Differentially Expressed Features |

sdm | Species Distribution Modelling |

SDMTools | Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises |

sdmvspecies | Create Virtual Species for Species Distribution Modelling |

sdnet | Soft-Discretization-Based Bayesian Network Inference |

sdPrior | Scale-Dependent Hyperpriors in Structured Additive Distributional Regression |

sdprisk | Measures of Risk for the Compound Poisson Risk Process with Diffusion |

SDR | Subgroup Discovery Algorithms for R |

sdtoolkit | Scenario Discovery Tools to Support Robust Decision Making |

sdwd | Sparse Distance Weighted Discrimination |

seacarb | Seawater Carbonate Chemistry |

sealasso | Standard Error Adjusted Adaptive Lasso |

searchable | Tools for Custom Searches / Subsets / Slices of Named R Objects |

searchConsoleR | Google Search Console R Client |

SearchTrees | Spatial Search Trees |

seas | Seasonal analysis and graphics, especially for climatology |

SEAsic | Score Equity Assessment- summary index computation |

season | Seasonal analysis of health data |

seasonal | R Interface to X-13-ARIMA-SEATS |

seawaveQ | U.S. Geological Survey seawaveQ model |

SEchart | SEchart |

SECP | Statistical Estimation of Cluster Parameters (SECP) |

secr | Spatially Explicit Capture-Recapture |

secrdesign | Sampling Design for Spatially Explicit Capture-Recapture |

secrlinear | Spatially Explicit Capture-Recapture for Linear Habitats |

seeclickfixr | Access Data from the SeeClickFix Web API |

seedy | Simulation of Evolutionary and Epidemiological Dynamics |

seeg | Statistics for Environmental Sciences, Engineering, and Geography |

seem | Simulation of Ecological and Environmental Models |

SEER2R | reading and writing SEER*STAT data files |

SEERaBomb | SEER and Atomic Bomb Survivor Data Analysis Tools |

seewave | Sound Analysis and Synthesis |

seg | A set of tools for measuring spatial segregation |

SegCorr | Detecting Correlated Genomic Regions |

segmag | Determine Event Boundaries in Event Segmentation Experiments |

segmented | Regression Models with Breakpoints/Changepoints Estimation |

Segmentor3IsBack | A Fast Segmentation Algorithm |

SEHmodel | Spatial Exposure-Hazard Model for Exposure and Impact Assessment on Exposed Individuals |

seismic | Predict Information Cascade by Self-Exciting Point Process |

seismicRoll | Fast Rolling Functions for Seismology using Rcpp |

sejmRP | An Information About Deputies and Votings in Polish Diet from Seventh to Eighth Term of Office |

Sejong | KoNLP static dictionaries and Sejong project resources |

SEL | Semiparametric elicitation |

selection | Correcting Biased Estimates Under Selection |

selectiongain | A Tool for Calculation and Optimization of the Expected Gain from Multi-Stage Selection |

selectiveInference | Tools for Post-Selection Inference |

selectMeta | Estimation of Weight Functions in Meta Analysis |

selectr | Translate CSS Selectors to XPath Expressions |

selectspm | Select Point Pattern Models Based on Minimum Contrast, AIC and Goodness of Fit |

SeleMix | Selective Editing via Mixture models |

selfea | Select Features Reliably with Cohen's Effect Sizes |

selfingTree | Genotype Probabilities in Intermediate Generations of Inbreeding Through Selfing |

SelvarMix | Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis |

sem | Structural Equation Models |

semdiag | Structural equation modeling diagnostics |

semGOF | Goodness-of-fit indexes for structural equation models |

semiArtificial | Generator of Semi-Artificial Data |

SemiCompRisks | Hierarchical Models for Parametric and Semi-Parametric Analyses of Semi-Competing Risks Data |

SEMID | Identifiability of Linear Structural Equation Models |

SemiMarkov | Multi-States Semi-Markov Models |

SemiPar | Semiparametic Regression |

SemiParBIVProbit | Semiparametric Copula Regression Models |

SemiParSampleSel | Semiparametric Sample Selection Modelling with Continuous or Discrete Response |

semisupKernelPCA | Kernel PCA projection, and semi-supervised variant |

SEMModComp | Model Comparisons for SEM |

semPlot | Path diagrams and visual analysis of various SEM packages' output |

semPLS | Structural Equation Modeling Using Partial Least Squares |

semsfa | Semiparametric Estimation of Stochastic Frontier Models |

semTools | Useful Tools for Structural Equation Modeling |

sendmailR | send email using R |

sendplot | Tool for sending interactive plots with tool-tip content |

sensitivity | Global Sensitivity Analysis of Model Outputs |

sensitivity2x2xk | Sensitivity Analysis for 2x2xk Tables in Observational Studies |

SensitivityCaseControl | Sensitivity Analysis for Case-Control Studies |

sensitivitymv | Sensitivity Analysis in Observational Studies |

sensitivitymw | Sensitivity analysis using weighted M-statistics |

sensitivityPStrat | Principal Stratification Sensitivity Analysis Functions |

SensMixed | Analysis of Sensory and Consumer Data in a Mixed Model Framework |

SensoMineR | Sensory data analysis with R |

sensory | Simultaneous Model-Based Clustering and Imputation via a Progressive Expectation-Maximization Algorithm |

sensR | Thurstonian Models for Sensory Discrimination |

SenSrivastava | Datasets from Sen & Srivastava |

SensusR | Sensus Analytics |

separationplot | Separation Plots |

seqCBS | CN Profiling using Sequencing and CBS |

seqDesign | Simulation and Group Sequential Monitoring of Randomized Two-Stage Treatment Efficacy Trials with Time-to-Event Endpoints |

SeqFeatR | A Tool to Associate FASTA Sequences and Features |

SeqGrapheR | Simple GUI for Graph Based Visualization of Cluster of DNA Sequence Reads |

seqHMM | Hidden Markov Models for Life Sequences and Other Multivariate, Multichannel Categorical Time Series |

seqinr | Biological Sequences Retrieval and Analysis |

seqMeta | Meta-Analysis of Region-Based Tests of Rare DNA Variants |

seqminer | Efficiently Read Sequence Data (VCF Format, BCF Format and METAL Format) into R |

seqmon | Sequential Monitoring of Clinical Trials |

seqPERM | Generates a permutation matrix based upon a sequence |

seqRFLP | Simulation and visualization of restriction enzyme cutting pattern from DNA sequences |

seqtest | Sequential Triangular Test |

sequences | Generic and Biological Sequences |

Sequential | Exact Sequential Analysis for Poisson and Binomial Data |

sequenza | Copy Number Estimation from Tumor Genome Sequencing Data |

serial | The Serial Interface Package |

seriation | Infrastructure for Ordering Objects Using Seriation |

seroincidence | Estimating Infection Rates from Serological Data |

servr | A Simple HTTP Server to Serve Static Files or Dynamic Documents |

sesem | Spatially explicit structural equation modeling |

session | Functions for interacting with, saving and restoring R sessions |

SetMethods | SetMethods: A Package Companion to "Set-Theoretic Methods for the Social Sciences" |

SETPath | Spiked Eigenvalue Test for Pathway data |

SetRank | Advanced Gene Set Enrichment Analysis |

setRNG | Set (Normal) Random Number Generator and Seed |

sets | Sets, Generalized Sets, Customizable Sets and Intervals |

setter | Mutators that Work with Pipes |

settings | Software Option Settings Manager for R |

setwidth | Automatically Set the Width Option on Terminal Emulators |

severity | Mayo's Post-data Severity Evaluation |

sExtinct | Calculates the historic date of extinction given a series of sighting events |

sfa | Stochastic Frontier Analysis |

sfsmisc | Utilities from "Seminar fuer Statistik" ETH Zurich |

sft | Functions for Systems Factorial Technology Analysis of Data |

SGCS | Spatial Graph Based Clustering Summaries for Spatial Point Patterns |

sgd | Stochastic Gradient Descent for Scalable Estimation |

sgeostat | An Object-Oriented Framework for Geostatistical Modeling in S+ |

SGL | Fit a GLM (or cox model) with a combination of lasso and group lasso regularization |

sglasso | Lasso Method for RCON(V,E) Models |

sglOptim | Generic Sparse Group Lasso Solver |

sglr | An R package for power and boundary calculations in pre-licensure vaccine trials using a sequential generalized likelihood ratio test |

sgof | Multiple Hypothesis Testing |

SGP | Student Growth Percentiles & Percentile Growth Trajectories |

sGPCA | Sparse Generalized Principal Component Analysis |

SGPdata | Exemplar Data Sets for SGP Analyses |

sgPLS | Sparse Group Partial Least Square Methods |

sgr | Sample Generation by Replacement |

sgRSEA | Enrichment Analysis of CRISPR/Cas9 Knockout Screen Data |

sgt | Skewed Generalized T Distribution Tree |

shades | Simple Colour Manipulation |

shape | Functions for plotting graphical shapes, colors |

ShapeChange | Change-Point Estimation using Shape-Restricted Splines |

shapefiles | Read and Write ESRI Shapefiles |

ShapePattern | Tools for Analyzing Planar Shape and Associated Patterns |

shapeR | Collection and Analysis of Otolith Shape Data |

shapes | Statistical Shape Analysis |

ShapeSelectForest | Shape Selection for Landsat Time Series of Forest Dynamics |

SharpeR | Statistical Significance of the Sharpe Ratio |

sharpshootR | A Soil Survey Toolkit |

sharx | Models and Data Sets for the Study of Species-Area Relationships |

shazam | Immunoglobulin Somatic Hypermutation Analysis |

SHELF | Tools to Support the Sheffield Elicitation Framework (SHELF) |

shiny | Web Application Framework for R |

shinyAce | Ace Editor Bindings for Shiny |

shinybootstrap2 | Bootstrap 2 Web Components for Use with Shiny |

shinyBS | Twitter Bootstrap Components for Shiny |

shinydashboard | Create Dashboards with 'Shiny' |

shinyFiles | A Server-Side File System Viewer For Shiny |

shinyjs | Perform Common JavaScript Operations in Shiny Apps using Plain R Code |

shinyRGL | Shiny Wrappers for RGL |

shinystan | Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models |

shinythemes | Themes for Shiny |

shinyTree | jsTree Bindings for Shiny |

SHIP | SHrinkage covariance Incorporating Prior knowledge |

SHLR | Shared Haplotype Length Regression |

shock | Slope Heuristic for Block-Diagonal Covariance Selection in High Dimensional Gaussian Graphical Models |

shopifyr | An R Interface to the Shopify API |

shotGroups | Analyze Shot Group Data |

showtext | Using Fonts More Easily in R Graphs |

showtextdb | Font Files for the 'showtext' Package |

shp2graph | Convert a SpatialLinesDataFrame object to a "igraph-class" object |

shrink | Global, Parameterwise and Joint Shrinkage Factor Estimation |

Shrinkage | Several Shrinkage Effect-Size Estimators |

ShrinkCovMat | Shrinkage Covariance Matrix Estimators |

shuffle | The Shuffle Estimator for Explainable Variance |

siar | Stable Isotope Analysis in R |

SIBER | Stable Isotope Bayesian Ellipses in R |

SID | Structural Intervention Distance |

sideChannelAttack | Side Channel Attack |

sidier | Substitution and Indel Distances to Infer Evolutionary Relationships |

sievetest | Sieve test reporting functions |

sig | Print Function Signatures |

sigclust | Statistical Significance of Clustering |

SightabilityModel | Wildlife Sightability Modeling |

sigloc | Signal Location Estimation |

sigmoid | Sigmoid Functions for Machine Learning |

signal | Signal Processing |

signalHsmm | Predict Presence of Signal Peptides |

signmedian.test | Perform Exact Sign Test and Asymptotic Sign Test in Large Samples |

sigora | Signature Overrepresentation Analysis |

SigTree | Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree |

SII | Calculate ANSI S3.5-1997 Speech Intelligibility Index |

simba | A Collection of functions for similarity analysis of vegetation data |

simboot | Simultaneous inference for diversity indices |

simcausal | Simulating Longitudinal Data with Causal Inference Applications |

SimComp | Simultaneous Comparisons for Multiple Endpoints |

SimCorMultRes | Simulates Correlated Multinomial Responses |

simctest | Safe Implementation of Monte Carlo Tests |

SimDesign | Structure for Organizing Monte Carlo Simulation Designs |

Sim.DiffProc | Simulation of Diffusion Processes |

simecol | Simulation of Ecological (and Other) Dynamic Systems |

simest | Constrained Single Index Model Estimation |

simex | SIMEX- and MCSIMEX-Algorithm for measurement error models |

simexaft | simexaft |

simFrame | Simulation framework |

SimHaz | Simulated Survival and Hazard Analysis for Time-Dependent Exposure |

SimilarityMeasures | Trajectory Similarity Measures |

Simile | Interact with Simile Models |

SimInf | A Framework for Data-Driven Stochastic Disease Spread Simulations |

simmer | Discrete-Event Simulation for R |

simmr | A Stable Isotope Mixing Model |

SIMMS | Subnetwork Integration for Multi-Modal Signatures |

simMSM | Simulation of Event Histories for Multi-State Models |

simone | Statistical Inference for MOdular NEtworks (SIMoNe) |

simPH | Tools for Simulating and Plotting Quantities of Interest Estimated from Cox Proportional Hazards Models |

simpleboot | Simple Bootstrap Routines |

simplegraph | Simple Graph Data Types and Basic Algorithms |

simpleNeural | An Easy to Use Multilayer Perceptron |

simpleRCache | Simple R Cache |

SimpleTable | Bayesian Inference and Sensitivity Analysis for Causal Effects from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured Confounding |

simplexreg | Regression Analysis of Proportional Data Using Simplex Distribution |

SimplicialCubature | Integration of Functions Over Simplices |

simplr | Basic Symbolic Expression Simplification |

simPop | Simulation of Synthetic Populations for Survey Data Considering Auxiliary Information |

Simpsons | Detecting Simpson's Paradox |

simr | Power Analysis for Generalised Linear Mixed Models by Simulation |

SimRAD | Simulations to Predict the Number of RAD and GBS Loci |

SimReg | Similarity Regression Functions |

simrel | Linear Model Data Simulation and Design of Computer Experiments |

simsalapar | Tools for Simulation Studies in Parallel |

simsem | SIMulated Structural Equation Modeling |

SimSeq | Nonparametric Simulation of RNA-Seq Data |

simSummary | Simulation summary |

simTool | Conduct Simulation Studies with a Minimal Amount of Source Code |

SimuChemPC | Simulation process of 4 selection methods in predicting chemical potent compounds |

SimultAnR | Correspondence and Simultaneous Analysis |

SIN | A SINful Approach to Selection of Gaussian Graphical Markov Models |

sinaplot | An Enhanced Chart for Simple and Truthful Representation of Single Observations over Multiple Classes |

siplab | Spatial Individual-Plant Modelling |

sirad | Functions for Calculating Daily Solar Radiation and Evapotranspiration |

siRSM | Single-Index Response Surface Models |

sirt | Supplementary Item Response Theory Models |

SIS | Sure Independence Screening |

sisal | Sequential Input Selection Algorithm |

sisus | SISUS: Stable Isotope Sourcing using Sampling |

sisVIVE | Some Invalid Some Valid Instrumental Variables Estimator |

sitar | Super Imposition by Translation and Rotation Growth Curve Analysis |

sitmo | Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files |

sitools | Format a number to a string with SI prefix |

sivipm | Sensitivity Indices with Dependent Inputs |

SixSigma | Six Sigma Tools for Quality Control and Improvement |

SiZer | SiZer: Significant Zero Crossings |

sjdbc | JDBC Driver Interface |

sjmisc | Data Transformation and Labelled Data Utility Functions |

sjPlot | Data Visualization for Statistics in Social Science |

sjstats | Collection of Convenient Functions for Common Statistical Computations |

SKAT | SNP-Set (Sequence) Kernel Association Test |

skatMeta | Efficient meta analysis for the SKAT test |

skda | Sparse (Multicategory) Kernel Discriminant Analysis |

skellam | Densities and Sampling for the Skellam Distribution |

SkewHyperbolic | The Skew Hyperbolic Student t-Distribution |

skewt | The Skewed Student-t Distribution |

Skillings.Mack | The Skillings-Mack Test Statistic for Block Designs with Missing Observations |

skmeans | Spherical k-Means Clustering |

Sky | Canopy Openness Analyzer Package |

sla | Two-Group Straight Line ANCOVA |

slackr | Send Messages, Images, R Objects and Files to 'Slack' Channels/Users |

slam | Sparse Lightweight Arrays and Matrices |

SLC | Slope and level change |

sld | Estimation and Use of the Quantile-Based Skew Logistic Distribution |

sleekts | 4253H, Twice Smoothing |

Sleuth2 | Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd Ed)" |

Sleuth3 | Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd Ed)" |

slfm | Tools for Fitting Sparse Latent Factor Model |

SLHD | Maximin-Distance (Sliced) Latin Hypercube Designs |

SLOPE | Sorted L1 Penalized Estimation (SLOPE) |

slp | Discrete Prolate Spheroidal (Slepian) Sequence Regression Smoothers |

sm | Smoothing methods for nonparametric regression and density estimation |

smaa | Stochastic Multi-Criteria Acceptability Analysis |

smac | Sparse Multi-category Angle-Based Large-Margin Classifiers |

smacof | Multidimensional Scaling |

smacpod | Statistical Methods for the Analysis of Case-Control Point Data |

smallarea | Fits a Fay Herriot Model |

smam | Statistical Modeling of Animal Movements |

smart | Sparse Multivariate Analysis via Rank Transformation |

SmarterPoland | Tools for Accessing Various Datasets Developed by the Foundation SmarterPoland.pl |

smatr | (Standardised) Major Axis Estimation and Testing Routines |

smbinning | Optimal Binning for Scoring Modeling |

SMC | Sequential Monte Carlo (SMC) Algorithm |

smcfcs | Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification |

smco | A simple Monte Carlo optimizer using adaptive coordinate sampling |

SMCP | Smoothed minimax concave penalization (SMCP) method for genome-wide association studies |

SMCRM | Data Sets for Statistical Methods in Customer Relationship Management by Kumar and Petersen (2012) |

smcure | Fit Semiparametric Mixture Cure Models |

smcUtils | Utility functions for sequential Monte Carlo |

smdata | Data to accompany Smithson & Merkle, 2013 |

smdc | Document Similarity |

smds | Symbolic Multidimensional Scaling |

sme | Smoothing-splines Mixed-effects Models |

smerc | Statistical Methods for Regional Counts |

SMFI5 | R functions and data from Chapter 5 of 'Statistical Methods for Financial Engineering' |

smfsb | SMfSB 2e: Stochastic Modelling for Systems Biology, second edition |

smint | Smooth Multivariate Interpolation for Gridded and Scattered Data |

SMIR | Companion to Statistical Modelling in R |

smirnov | Provides two taxonomic coefficients from E. S. Smirnov "Taxonomic analysis" (1969) book |

SmithWilsonYieldCurve | Smith-Wilson Yield Curve Construction |

SML | Statistical Machine Learning |

SMNCensReg | Fitting Univariate Censored Regression Model Under the Family of Scale Mixture of Normal Distributions |

smnet | Smoothing for Stream Network Data |

smoof | Single and Multi-Objective Optimization Test Functions |

smoother | Functions Relating to the Smoothing of Numerical Data |

SmoothHazard | Fitting illness-death model for interval-censored data |

smoothHR | Smooth Hazard Ratio Curves Taking a Reference Value |

smoothie | Two-dimensional Field Smoothing |

smoothmest | Smoothed M-estimators for 1-dimensional location |

smoothSurv | Survival Regression with Smoothed Error Distribution |

smoothtail | Smooth Estimation of GPD Shape Parameter |

SMPracticals | Practicals for use with Davison (2003) Statistical Models |

SMR | Externally Studentized Midrange Distribution |

sms | Spatial Microsimulation |

smss | Datasets for Agresti and Finlay's "Statistical Methods for the Social Sciences" |

SMVar | Structural Model for variances |

sn | The Skew-Normal and Skew-t Distributions |

sna | Tools for Social Network Analysis |

snapshot | Gadget N-body cosmological simulation code snapshot I/O utilities |

SNFtool | Similarity Network Fusion |

snht | Standard Normal Homogeneity Test |

snipEM | Snipping methods for robust estimation and clustering |

snn | Stabilized Nearest Neighbor Classifier |

snow | Simple Network of Workstations |

SnowballC | Snowball stemmers based on the C libstemmer UTF-8 library |

snowboot | Bootstrap Methods for Network Inference |

snowfall | Easier cluster computing (based on snow) |

snowFT | Fault Tolerant Simple Network of Workstations |

snpar | Supplementary Non-parametric Statistics Methods |

SNPassoc | SNPs-based whole genome association studies |

snpEnrichment | SNPs Enrichment Analysis |

snplist | Tools to Create Gene Sets |

SNPmaxsel | Maximally selected statistics for SNP data |

SNPMClust | Bivariate Gaussian Genotype Clustering and Calling for Illumina Microarrays |

snp.plotter | snp.plotter |

snpRF | Random Forest for SNPs to Prevent X-chromosome SNP Importance Bias |

snpStatsWriter | Flexible writing of snpStats objects to flat files |

SNPtools | Accessing, subsetting and plotting mouse SNPs |

sns | Stochastic Newton Sampler (SNS) |

SNscan | Scan Statistics in Social Networks |

SNSequate | Standard and Nonstandard Statistical Models and Methods for Test Equating |

SOAR | Memory management in R by delayed assignments |

soc.ca | Specific Correspondence Analysis for the Social Sciences |

SocialMediaLab | Tools for Collecting Social Media Data and Generating Networks for Analysis |

SocialMediaMineR | A Social Media Search and Analytic Tool |

SocialNetworks | Generates social networks based on distance |

SocialPosition | Social Position Indicators Construction Toolbox |

SOD | SOD for multidimensional scaling |

SoDA | Functions and Examples for "Software for Data Analysis" |

sodavis | SODA: Main and Interaction Effects Selection for Discriminant Analysis and Logistic Regression |

SODC | Optimal Discriminant Clustering(ODC) and Sparse Optimal Discriminant Clustering(SODC) |

sodium | A Modern and Easy-to-Use Crypto Library |

Sofi | Interfaz interactiva con fines didacticos |

softclassval | Soft Classification Performance Measures |

SoftClustering | Soft Clustering Algorithms |

softImpute | Matrix Completion via Iterative Soft-Thresholded SVD |

soilDB | Soil Database Interface |

soilphysics | Soil Physical Analysis |

soilprofile | A package to consistently represent soil properties along a soil profile |

SoilR | Models of Soil Organic Matter Decomposition |

soil.spec | Soil Spectroscopy Tools and Reference Models |

soiltexture | Functions for Soil Texture Plot, Classification and Transformation |

soilwater | Implementation of Parametric Formulas for Soil Water Retention or Conductivity Curve |

solaR | Radiation and Photovoltaic Systems |

solarius | An R Interface to SOLAR |

solarPos | Solar Position Algorithm for Solar Radiation Applications |

solidearthtide | Solid Earth Tide Computation |

SOLOMON | Parentage analysis |

solr | General Purpose R Interface to Solr |

solrium | General Purpose R Interface to 'Solr' |

som | Self-Organizing Map |

soma | General-Purpose Optimisation With the Self-Organising Migrating Algorithm |

SOMbrero | SOM Bound to Realize Euclidean and Relational Outputs |

somebm | some Brownian motions simulation functions |

someKfwer | Controlling the Generalized Familywise Error Rate |

someMTP | Some Multiple Testing Procedures |

sommer | Solving Mixed Model Equations in R |

somplot | Visualisation of hexagonal Kohonen maps |

sonicLength | Estimating Abundance of Clones from DNA fragmentation data |

soobench | Single Objective Optimization Benchmark Functions |

SOPIE | Non-Parametric Estimation of the Off-Pulse Interval of a Pulsar |

soql | Helps Make Socrata Open Data API Calls |

SOR | Estimation using Sequential Offsetted Regression |

SortableHTMLTables | Turns a data frame into an HTML file containing a sortable table |

sortinghat | sortinghat |

sorvi | Finnish Open Government Data Toolkit |

sos | Search contributed R packages, sort by package |

sos4R | An R client for the OGC Sensor Observation Service |

sotkanet | Tools for Sotkanet Open Data Portal |

sound | A Sound Interface for R |

soundecology | Soundscape Ecology |

SoundexBR | Phonetic-Coding for Portuguese |

SOUP | Stochastic Ordering Using Permutations (and Pairwise Comparisons) |

source.gist | Read R code from a GitHub Gist |

sourceR | Fits a Non-Parametric Bayesian Source Attribution Model |

sourcetools | Tools for the Reading and Tokenization of R Code |

SoyNAM | Soybean Nested Association Mapping Dataset |

sp | Classes and Methods for Spatial Data |

sp23design | Design and Simulation of seamless Phase II-III Clinical Trials |

sp500SlidingWindow | Sliding Window Investment Analysis |

spa | Implements The Sequential Predictions Algorithm |

SPA3G | SPA3G: R package for the method of Li and Cui (2012) |

spaa | SPecies Association Analysis |

space | Sparse PArtial Correlation Estimation |

SPACECAP | A Program to Estimate Animal Abundance and Density using Bayesian Spatially-Explicit Capture-Recapture Models |

spaceExt | Extension of SPACE |

spacejam | Sparse conditional graph estimation with joint additive models |

spacetime | Classes and Methods for Spatio-Temporal Data |

spacodiR | Spatial and Phylogenetic Analysis of Community Diversity |

spacom | Spatially Weighted Context Data for Multilevel Modelling |

SpaDES | Develop and Run Spatially Explicit Discrete Event Simulation Models |

spaero | Software for Project AERO |

spam | SPArse Matrix |

spaMM | Mixed Models, Particularly Spatial GLMMs |

spanel | Spatial Panel Data Models |

spanr | Search Partition Analysis |

SPAr | Perform rare variants association analysis based on summation of partition approaches |

sparc | Semiparametric Generalized Linear Models |

sparcl | Perform sparse hierarchical clustering and sparse k-means clustering |

spareserver | Client Side Load Balancing |

spark | Sparklines in the 'R' Terminal |

sparkTable | Sparklines and Graphical Tables for TeX and HTML |

sparktex | Generate LaTeX sparklines in R |

SPARQL | SPARQL client |

sparr | SPAtial Relative Risk |

sparseBC | Sparse Biclustering of Transposable Data |

sparsebnUtils | Utilities for Learning Sparse Bayesian Networks |

sparsediscrim | Sparse and Regularized Discriminant Analysis |

SparseFactorAnalysis | Scaling Count and Binary Data with Sparse Factor Analysis |

SparseGrid | Sparse grid integration in R |

sparseHessianFD | Numerical Estimation of Sparse Hessians |

sparseLDA | Sparse Discriminant Analysis |

SparseLearner | Sparse Learning Algorithms Using a LASSO-Type Penalty for Coefficient Estimation and Model Prediction |

sparseLTSEigen | RcppEigen back end for sparse least trimmed squares regression |

SparseM | Sparse Linear Algebra |

sparseMVN | Multivariate Normal Functions for Sparse Covariance and Precision Matrices |

sparsenet | Fit sparse linear regression models via nonconvex optimization |

sparsereg | Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data |

sparseSEM | Sparse-aware Maximum Likelihood for Structural Equation Models |

sparsesvd | Sparse Truncated Singular Value Decomposition (from 'SVDLIBC') |

sparseSVM | Solution Paths of Sparse Linear Support Vector Machine with Lasso or ELastic-Net Regularization |

SparseTSCGM | Sparse Time Series Chain Graphical Models |

sparsevar | A Package for Sparse VAR/VECM Estimation |

spartan | Simulation Parameter Analysis R Toolkit ApplicatioN: Spartan |

spatcounts | Spatial count regression |

spate | Spatio-Temporal Modeling of Large Data Using a Spectral SPDE Approach |

spatgraphs | Graph Edge Computations for Spatial Point Patterns |

spatial | Functions for Kriging and Point Pattern Analysis |

spatialCovariance | Computation of Spatial Covariance Matrices for Data on Rectangles |

spatialEco | Spatial Analysis and Modelling |

SpatialEpi | Methods and Data for Spatial Epidemiology |

SpatialExtremes | Modelling Spatial Extremes |

spatialfil | Application of 2D Convolution Kernel Filters to Matrices or 3D Arrays |

spatial.gev.bma | Hierarchical spatial generalized extreme value (GEV) modeling with Bayesian Model Averaging (BMA) |

spatialkernel | Nonparameteric estimation of spatial segregation in a multivariate point process |

spatialnbda | Performs spatial NBDA in a Bayesian context |

SpatialNP | Multivariate nonparametric methods based on spatial signs and ranks |

SpatialPack | Package for analysis of spatial data |

SpatialPosition | Spatial Position Models |

spatialprobit | Spatial Probit Models |

spatialsegregation | Segregation measures for multitype spatial point patterns |

spatialTailDep | Estimation of spatial tail dependence models |

spatial.tools | R functions for working with spatial data |

SpatialTools | Tools for Spatial Data Analysis |

SpatialVx | Spatial Forecast Verification |

SpatioTemporal | Spatio-Temporal Model Estimation |

SpatMCA | Regularized Spatial Maximum Covariance Analysis |

SpatPCA | Regularized Principal Component Analysis for Spatial Data |

spatstat | Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests |

spatsurv | Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models |

spBayes | Univariate and Multivariate Spatial-temporal Modeling |

spBayesSurv | Bayesian Modeling and Analysis of Spatially Correlated Survival Data |

spc | Statistical Process Control – Collection of Some Useful Functions |

spcadjust | Functions for Calibrating Control Charts |

SPCALDA | A New Reduced-Rank Linear Discriminant Analysis Method |

spcosa | Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata |

spcov | Sparse Estimation of a Covariance Matrix |

spcr | Sparse principal component regression |

spd | Semi Parametric Distribution |

spdep | Spatial Dependence: Weighting Schemes, Statistics and Models |

spduration | Split-Population Duration (Cure) Regression |

spdynmod | Spatio-Dynamic Wetland Plant Communities Model |

spe | Stochastic Proximity Embedding |

speaq | Tools for Nuclear Magnetic Resonance Spectrum Alignment and Quantitative Analysis |

speccalt | Alternative spectral clustering, with automatic estimation of k |

SpecHelpers | Spectroscopy Related Utilities |

SPECIES | Statistical package for species richness estimation |

speciesgeocodeR | Prepare Species Distributions for the Use in Phylogenetic Analyses |

SpeciesMix | Fit Mixtures of Archetype species |

specificity | Specificity of personality trait-outcome (or trait-trait) associations |

specmine | Metabolomics and Spectral Data Analysis and Mining |

SpecsVerification | Forecast Verification Routines for the SPECS FP7 Project |

spectralGP | Approximate Gaussian Processes Using the Fourier Basis |

spectral.methods | Singular Spectrum Analysis (SSA) Tools for Time Series Analysis |

spectrino | Spectra Visualization, Organizer and Data Preparation |

speedglm | Fitting Linear and Generalized Linear Models to Large Data Sets |

speff2trial | Semiparametric efficient estimation for a two-sample treatment effect |

SPEI | Calculation of the Standardised Precipitation-Evapotranspiration Index |

sperich | Auxiliary Functions to Estimate Centers of Biodiversity |

sperrorest | Spatial Error Estimation and Variable Importance |

spfrontier | Spatial Stochastic Frontier models estimation |

spgrass6 | Interface Between GRASS 6+ Geographical Information System and R |

spgs | Statistical Patterns in Genomic Sequences |

spgwr | Geographically Weighted Regression |

sphereplot | Spherical plotting |

SphericalCubature | Numerical Integration over Spheres and Balls in n-Dimensions; Multivariate Polar Coordinates |

SphericalK | Spherical K-Function |

SpherWave | Spherical Wavelets and SW-based Spatially Adaptive Methods |

sphet | Estimation of spatial autoregressive models with and without heteroskedastic innovations |

spi | Compute SPI index |

SPIAssay | A genetic-based assay for the identification of cell lines |

spider | Species Identity and Evolution in R |

spiders | Fits Predator Preferences Model |

spikeslab | Prediction and variable selection using spike and slab regression |

spikeSlabGAM | Bayesian Variable Selection and Model Choice for Generalized Additive Mixed Models |

SPIn | Simulation-efficient Shortest Probability Intervals |

spinyReg | Sparse Generative Model and Its EM Algorithm |

splancs | Spatial and Space-Time Point Pattern Analysis |

splitstackshape | Stack and Reshape Datasets After Splitting Concatenated Values |

splm | Econometric Models for Spatial Panel Data |

spls | Sparse Partial Least Squares (SPLS) Regression and Classification |

splus2R | Supplemental S-PLUS Functionality in R |

splusTimeDate | Times and Dates from S-PLUS |

splusTimeSeries | Time Series from S-PLUS |

spm12r | Wrapper Functions for SPM (Statistical Parametric Mapping) Version 12 from the Wellcome Trust Centre for Neuroimaging |

spMC | Continuous-Lag Spatial Markov Chains |

SPmlficmcm | Semiparametric Maximum Likelihood Method for Interactions Gene-Environment in Case-Mother Control-Mother Designs |

spnet | Plotting (Social) Networks on Maps |

spocc | Interface to Species Occurrence Data Sources |

spoccutils | Utilities for Use with 'spocc' |

SPODT | Spatial Oblique Decision Tree |

sporm | Semiparametric proportional odds rate model |

SportsAnalytics | Infrastructure for Sports Analytics |

SPOT | Sequential Parameter Optimization Toolbox |

spray | Sparse Arrays and Multivariate Polynomials |

SPREDA | Statistical Package for Reliability Data Analysis |

sprex | Calculate Species Richness and Extrapolation Metrics |

sprint | Simple Parallel R INTerface |

sprinter | Framework for Screening Prognostic Interactions |

sprintfr | An Easy Interface to String Formatting |

sprm | Sparse and Non-Sparse Partial Robust M Regression and Classification |

sprsmdl | Sparse modeling toolkit |

SPRT | Wald's Sequential Probability Ratio Test |

spsann | Optimization of Sample Configurations using Spatial Simulated Annealing |

spsi | Shape-Preserving Uni-Variate and Bi-Variate Spline Interpolation |

SPSL | Site Percolation on Square Lattice (SPSL) |

spsmooth | spsmooth: An Extension Package for 'mgcv' |

spsurvey | Spatial Survey Design and Analysis |

spt | Sierpinski Pedal Triangle |

spTDyn | Spatially Varying and Spatio-Temporal Dynamic Linear Models |

spTest | Nonparametric Hypothesis Tests of Isotropy and Symmetry |

spThin | Functions for Spatial Thinning of Species Occurrence Records for Use in Ecological Models |

spTimer | Spatio-Temporal Bayesian Modelling Using R |

sptm | SemiParametric Transformation Model Methods |

spuRs | Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R" |

SQDA | Sparse Quadratic Discriminant Analysis |

sqldf | Perform SQL Selects on R Data Frames |

sqliter | Connection wrapper to SQLite databases |

sqlutils | Utilities for working with SQL files |

SQN | subset quantile normalization |

SQUAREM | Squared extrapolation methods for accelerating fixed-point iterations |

squash | Color-Based Plots for Multivariate Visualization |

sra | Selection Response Analysis |

SRCS | Statistical Ranking Color Scheme for Multiple Pairwise Comparisons |

srd | Draws Scaled Rectangle Diagrams |

sROC | Nonparametric Smooth ROC Curves for Continuous Data |

SRRS | The Stepwise Response Refinement Screener (SRRS) |

srvyr | 'dplyr'-Like Syntax for Summary Statistics of Survey Data |

ss3sim | Fisheries Stock Assessment Simulation Testing with Stock Synthesis |

ssa | Simultaneous Signal Analysis |

ssanv | Sample Size Adjusted for Nonadherence or Variability of Input Parameters |

sscor | Robust Correlation Estimation and Testing Based on Spatial Signs |

ssd | Sample Size Determination (SSD) for Unordered Categorical Data |

SSDforR | Functions to Analyze Single System Data |

SSDM | Stacked Species Distribution Modelling |

sSDR | Tools Developed for Structured Sufficient Dimension Reduction (sSDR) |

ssfa | Spatial Stochastic Frontier Analysis |

ssfit | Fitting of parametric models using summary statistics |

ssh.utils | Local and remote system commands with output and error capture |

ssize.fdr | Sample Size Calculations for Microarray Experiments |

ssizeRNA | Sample Size Calculation for RNA-Seq Experimental Design |

SSL | Semi-Supervised Learning |

ssmn | Skew Scale Mixtures of Normal Distributions |

ssmrob | Robust estimation and inference in sample selection models |

SSN | Spatial Modeling on Stream Networks |

sspline | Smoothing Splines on the Sphere |

sspse | Estimating Hidden Population Size using Respondent Driven Sampling Data |

SSrat | Two-dimensional sociometric status determination with rating scales |

SSRMST | Sample Size Calculation using Restricted Mean Survival Time |

sss | Tools for Importing Files in the Triple-s (Standard Survey Structure) Format |

SSsimple | State space models |

ssvd | Sparse SVD |

ssym | Fitting Semi-Parametric log-Symmetric Regression Models |

st | Shrinkage t Statistic and Correlation-Adjusted t-Score |

stabledist | Stable Distribution Functions |

stablespec | Stable Specification Search in Structural Equation Models |

stabs | Stability Selection with Error Control |

Stack | Stylized concatenation of data.frames or ffdfs |

stackoverflow | Stack Overflow's Greatest Hits |

stacomirtools | stacomi ODBC connection class |

stagePop | Modelling the Population Dynamics of a Stage-Structured Species in Continuous Time |

stam | Spatio-Temporal Analysis and Modelling |

StAMPP | Statistical Analysis of Mixed Ploidy Populations |

STAND | Statistical Analysis of Non-Detects |

StandardizeText | Standardize Text |

StanHeaders | C++ Header Files for Stan |

STAR | Spike Train Analysis with R |

stargazer | Well-Formatted Regression and Summary Statistics Tables |

starma | Modelling Space Time AutoRegressive Moving Average (STARMA) Processes |

startupmsg | Utilities for Start-Up Messages |

stashR | A Set of Tools for Administering SHared Repositories |

Stat2Data | Datasets for Stat2 |

statar | Tools Inspired by 'Stata' to Manipulate Tabular Data |

statcheck | Extract Statistics from Articles and Recompute P Values |

StatDA | Statistical Analysis for Environmental Data |

StatDataML | Read and Write StatDataML Files |

statebins | U.S. State Cartogram Heatmaps in R; an Alternative to Choropleth Maps for USA States |

statfi | statfi R tools |

stationaRy | Get Hourly Meteorological Data from Global Stations |

StatMatch | Statistical Matching |

StatMeasures | Easy Data Manipulation, Data Quality and Statistical Checks |

StatMethRank | Statistical Methods for Ranking Data |

statmod | Statistical Modeling |

statnet | Software Tools for the Statistical Analysis of Network Data |

statnet.common | Common R Scripts and Utilities Used by the Statnet Project Software |

statnetWeb | A Graphical User Interface for Network Modeling with 'Statnet' |

Statomica | Statomica utility package |

staTools | Statistical Tools for Social Network Analysis |

StatRank | Statistical Rank Aggregation: Inference, Evaluation, and Visualization |

stcov | Stein's Covariance Estimator |

stdReg | Regression Standardization |

steadyICA | ICA and Tests of Independence via Multivariate Distance Covariance |

steepness | Testing Steepness of Dominance Hierarchies |

SteinIV | Semi-Parametric Stein-Like Estimator with Instrumental Variables |

stellaR | stellar evolution tracks and isochrones |

Stem | Spatio-temporal models in R |

STEPCAM | ABC-SMC Inference of STEPCAM |

stepp | Subpopulation Treatment Effect Pattern Plot (STEPP) |

stepPlr | L2 penalized logistic regression with a stepwise variable selection |

stepR | Fitting Step-Functions |

stepwise | Stepwise detection of recombination breakpoints |

StereoMorph | Stereo Camera Calibration and Reconstruction |

stheoreme | Klimontovich's S-Theorem Algorithm Implementation and Data Preparation Tools |

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